@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Wbm0521: (2015-12-02 )
MIEVSVHYGNVDRAFPVLKKTIQKEGRGMKMKKQYHEKKSEKRAKKKAEAKKKKRQQESRRQRYGW
Atome Classification :
(20 SA)
-------------------------------------------------....-----...---------------.-.---10.....---...20.....--...----30------........-.40-.........50.......---.60.....----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------
M
I
E
V
-----
S
V
H---------------Y-G---N
V
D
R
A
F
P
---
V
L
K
K
T
I
Q
KEG--RG
M
----
K
-------
M
K
K
Q
Y
H
E
K
-
K
S
--
E
K
R
A
K
K
K
A
E
A
K
K
K
K
R
Q
Q
E
---
S
R
R
QRYGW----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
71.14
28%
35
- C3 -
2KK4
-
Y2094_ARCFU
A:
[1-95]
-----------------------------QGHMDLI
C
M
Y
V
F
KGEESF
G
E
S
I
D
V
YGDYL
I
V
K
---------------
V
-
G
---
T
E
F
L
A
V
P
-----
K
K
S
I
K
S
V
E
--
D
G
R
----
I
-------
V
I
G
E
F
D
E
E
-
E
A
--
R
E
L
G
R
K
W
L
E
E
K
S
K
P
V
T
L
E
---
E
L
K
S
-
Y
G
F
GEEGEGS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
67.12
19%
-26
- C3 -
4U1D
-
EIF3A_YEAST
A:
[9-496]
FR
P
E
N
A
I
K
R
A
D
E
L
I
S
V
GE
K
Q
A
A
L
Q
S
L
H
D
F
I
T
ARRIRWATPSTV
E
P
V
V
F
K
F
L
E
I
-----
G
V
E
---------------
L
-
K
K
G
K
L
L
K
D
G
L
H
---
Q
Y
K
K
L
I
Q
G
S
T
--
E
G
L
V
S
V
G
A
-------
V
A
R
K
F
I
D
L
-
V
E
--
S
K
I
A
S
E
Q
T
R
A
D
E
L
Q
K
Q
E
I
DA
I
T
S
W
L
R
F
T
W
E
S
Y
R
A
V
L
D
L
L
RNNALL
E
I
T
Y
S
G
V
V
K
K
T
M
H
F
C
L
K
Y
QR
K
N
E
F
K
R
L
A
E
M
L
R
Q
H
L
D
A
A
N
Y
Q
Q
SKSGNNLVDLSD
A
D
T
L
Q
R
Y
L
D
Q
R
F
Q
Q
V
D
V
S
V
K
L
EL
W
H
E
A
Y
R
S
I
E
D
V
F
H
L
M
K
I
SKRAPK
P
S
T
L
A
N
Y
Y
E
N
L
V
K
V
F
F
V
S
GD
P
L
L
H
T
T
A
W
K
K
F
Y
K
L
Y
S
T
NPRAT
E
E
E
F
K
T
Y
S
S
T
I
F
L
S
A
I
S
TQLDE
I
P
S
I
GYDPH
L
R
M
Y
R
L
L
NLDAKPT
R
K
E
M
L
Q
S
I
I
E
DESIYGKVD
E
E
L
K
E
L
Y
D
I
IEVNFDVDT
V
K
Q
Q
L
E
N
L
L
V
K
L
S
S
K
T
Y
F
S
Q
Y
I
A
P
L
R
D
V
I
M
R
R
V
F
V
A
A
S
Q
K
F
TTVS
Q
S
E
L
Y
K
L
A
TLPAPL
D
L
S
A
W
D
I
E
K
S
L
L
Q
A
A
V
E
DY
V
S
I
T
I
DHESA
K
V
T
F
A
K
17
Fugue
65.33
15%
38
- C3 -
4CGB
-
EMAL2_HUMAN
A:
[5-48]
--------------------------------------------------------------------------------------------------
E
V
D
D
--
R
V
S
----
A
-------
L
E
Q
R
L
Q
L
Q
-
E
D
--
E
L
A
V
L
K
A
A
L
A
D
A
L
R
R
L
R
A
---
C
E
E
Q
G
A
A
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
63.31
17%
49
* C3 *
3A1Q
-
UIMC1_MOUSE
C:
[76-120]
---------------------------------------------------------------------------------------------
G
P
L
G
S
E
E
E
Q
--
F
A
L
----
A
-------
L
K
M
S
E
Q
E
A
-
R
E
--
V
N
N
Q
E
E
K
E
E
E
L
L
R
K
A
I
A
E
---
S
L
N
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
59.51
20%
68
- C3 -
2KL8
-
?
A:
[1-85]
--------------------------------------------------
M
E
M
-----
D
I
R
---------------
F
R
G
---
D
D
L
E
A
F
E
---
K
A
L
K
E
M
I
R
Q
A
--
R
K
F
----
A
-------
G
T
V
T
Y
T
L
D
-
G
N
D
L
E
I
R
I
T
G
V
P
E
Q
V
R
K
E
L
A
K
E
---
A
E
R
L
A
K
E
F
N
I
T
V
T
Y
T
I
RLEHHHHHH-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
53.82
18%
90
- C3 -
1A93
2
B:
[1-32]
-----------------------------------------------------------------------------------------------------
C
--
G
G
M
----
R
-------
R
K
N
D
T
H
Q
Q
-
D
I
--
D
D
L
K
R
Q
N
A
L
L
E
Q
Q
V
R
A
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
48.37
25%
-58
- C3 -
1Y51
-
PTHP_GEOSE
A:
[62-85]
---------------------------------------------------
K
I
-----
T
A
E
---------------
G
-
A
---
D
A
A
E
A
M
A
---
A
L
T
D
T
L
A
K
E
G
--
L
A
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
47.04
32%
-30
- C3 -
4M9Q
1
ARL13_CHLRE
A:
[167-196]
------------------------------------------------------------------------------
G
---
T
V
D
R
E
F
G
---
R
L
D
P
R
V
Q
T
E
A
--
E
E
V
----
R
-------
Q
E
E
A
R
K
K
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
44.24
21%
-72
- C3 -
1PCH
-
PTHP_MYCCT
A:
[60-83]
--------------------------------------------------
I
T
I
-----
Q
A
D
---------------
G
-
N
---
D
A
D
Q
A
I
Q
---
A
I
K
Q
T
M
I
D
T
A
--
L
I
Q
----
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
43.62
20%
85
- C3 -
1S12
2
?
A:
[1-94]
-------------------------------------------------
M
I
K
V
-----
T
V
T
NS
F
F
E
V
T
G
H
A
PD
K
T
L
C
-
A
---
S
V
S
L
L
T
Q
---
H
V
A
N
F
L
K
A
E
K
--
K
-
A
----
K
-------
I
K
K
E
S
G
Y
L
-
K
V
--
K
F
E
E
L
E
N
C
E
V
K
V
L
A
A
M
V
R
---
S
L
K
E
L
E
Q
K
F
P
SQ
I
R
V
E
V
I
D
N
G
S--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
43.05
12%
37
- C3 -
3I38
-
?
A:
[200-302]
-----------------------HPL
F
D
I
V
GH
N
L
E
I
V
L
P
L
A
P
W
E
A
A
L
G
A
K
V
T
V
-----
P
T
L
---------------
K
-
E
---
S
I
L
L
T
V
P
PGS
Q
A
G
Q
R
L
R
I
K
G
--
K
G
L
----
V
SKT
H
T
G
D
L
F
A
V
I
K
I
V
M
P
T
--
K
P
D
E
K
A
R
E
L
W
Q
Q
L
A
A
A
E
A
---
S
F
D
P
R
K
T
W
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
41.51
25%
-51
- C3 -
1PTF
-
PTHP_ENTFA
A:
[62-85]
---------------------------------------------------
T
I
-----
T
V
D
---------------
G
-
A
---
D
E
A
E
G
M
A
---
A
I
V
E
T
L
Q
K
E
G
--
L
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
40.87
12%
113
- C3 -
1S5L
-
PSBX_THEEB
X:
[11-50]
------------------------------------------------------------------------------------------------
T
I
T
P
S
L
--
K
G
F
----
F
-------
I
G
L
L
S
G
A
V
-
V
L
--
G
L
T
F
A
V
L
I
A
I
S
Q
I
D
K
V
Q
R
---
S
L
P
F
S
D
I
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
39.63
27%
68
- C2 -
2YKR
-
RS21_ECOLI
U:
[3-53]
----------------------------------------------------
I
-----
K
V
R
E--------------
N
-
E
---
P
F
D
V
A
L
R
---
R
F
K
R
S
C
E
K
A
G
VL
A
E
V
----
R
-------
R
R
E
-
F
Y
E
K
-
P
T
--
T
E
R
K
R
A
K
A
S
A
V
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
38.75
17%
-9
- C3 -
1KA5
-
PTHP_STAAU
A:
[62-85]
---------------------------------------------------
T
I
-----
Y
A
D
---------------
G
-
S
---
D
E
S
D
A
I
Q
---
A
I
S
D
V
L
S
K
E
G
--
L
T
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
33.82
19%
-80
- C3 -
1Q9U
3
?
A:
[4-28]
-------------------------------------------------
M
F
H
Y
-----
T
V
D
V
--------------
S
-
T
---
G
M
N
E
T
I
E
---
R
L
E
E
S
L
K
Q
E
G
--
F
G
V
----
L
-------
W
Q
F
S
V
T
E
K
-
L
Q
--
E
K
G
L
D
F
S
T
P
M
V
I
L
E
V
C
S
W
---
N
P
Q
E
A
A
R
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
30.25
13%
-38
- C3 -
1J3M
1
?
A:
[3-27]
---------------------------------------------------
G
M
-----
R
K
T
L
--------------
K
-
A
---
T
L
A
E
A
R
A
---
Q
V
E
A
A
L
K
E
E
G
--
F
G
I
----
L
-------
T
E
I
D
V
A
A
T
-
L
K
--
A
K
L
G
L
E
K
P
P
Y
L
I
L
G
A
C
N
P
---
N
L
A
A
R
A
L
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
26.72
13%
26
- C3 -
1WN8
-
A:
[3-18]
------------------------------------------------------------------------------
K
---
S
S
E
T
T
L
T
---
M
F
L
K
E
M
Q
L
K
G
--
L
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
18.64
11%
-53
- C3 -
2K6L
-
?
A:
[4-23]
--------------------------------------------------
V
R
W
-----
N
I
A
V
--------------
S
-
P
---
D
V
D
Q
S
V
R
---
M
F
I
A
A
Q
G
G
G
R
--
K
G
D
----
L
-------
S
R
F
I
E
D
A
V
-
R
A
--
Y
L
F
E
R
A
V
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
17.81
14%
190
- C1 -
2KRK
-
A:
[6-19]
--------------------------------------------------------------------------------------------------------------------------
H
H
H
S
H
-
P
N
--
E
E
A
R
L
D
I
L
K
I
H
S
R
K
M
N
L
T
---
R
G
I
N
L
R
K
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------