@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA0285: (2016-03-14 )
MENQKQGNGLKIATWVFIVLTVVTPLFGIGSIVCSINYKKYDAEKGSKLLQIAIIVTIIAFVLNLLAYLGLR
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10..----......20...--.....30-...-------...-...40..-......50..--......60........70.------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MENQKQGN
G
L
K
I
A
----
T
W
V
F
I
V
L
T
V
V
T
--
P
L
F
G
I
G
--
S
I
V
-------
C
S
I
-
N
Y
K
KYDA-EKG
S
K
L
L
Q
I
A
--
I
I
V
T
I
I
A
F
V
L
N
L
L
A
Y
LGLR------
3
PsiBlast_PDB
68.71
38%
-132
- C4 -
5D9H
1
?
A:
[91-149]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
W
L
V
M
--
K
L
L
S
G
G
--
S
M
L
-------
D
I
I
-
K
Y
I
V
N
R
G
-
E
H
K
N
G
V
L
E
E
A
--
I
I
A
T
I
L
K
E
V
L
E
G
L
D
Y
L
---------
20
Fugue
65.88
21%
-89
- C4 -
2KON
-
?
A:
[1-82]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
N
V
A
H
Y
RG
Y
E
I
E
P
G
H
Q
Y
R
D
D
I
R
K
Y
V
----
P
Y
A
L
I
R
K
V
G
V
P
--
D
R
T
P
I
P
--
T
T
Y
-------
P
E
F
-
Y
D
L
E
A
D
A
-
E
R
V
S
I
A
C
A
K
I
--
I
I
D
S
H
L
D
R
H
D
Q
G
L
A
D
L
G
--------
6
PsiBlast_PDB
60.69
29%
-78
- C4 -
3AYN
2
OPSD_TODPA
A:
[157-207]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
F
----
V
W
L
W
S
V
L
W
A
I
G
--
P
I
F
G
W
G
--
A
Y
T
L
E
GVLC
N
C
S
F
-
D
Y
I
S
R
D
S
-
T
T
R
S
N
I
L
C
M
F
--
I
L
-----------------------
7
PsiBlast_PDB
60.32
29%
-71
- C4 -
2ZIY
1
OPSD_TODPA
A:
[156-206]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
F
----
V
W
L
W
S
V
L
W
A
I
G
--
P
I
F
G
W
G
--
A
Y
T
L
E
GVLC
N
C
S
F
-
D
Y
I
S
R
D
S
-
T
T
R
S
N
I
L
C
M
F
--
I
L
-----------------------
4
PsiBlast_PDB
60.15
29%
-74
- C4 -
2Z73
1
OPSD_TODPA
A:
[157-207]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
F
----
V
W
L
W
S
V
L
W
A
I
G
--
P
I
F
G
W
G
--
A
Y
T
L
E
GVLC
N
C
S
F
-
D
Y
I
S
R
D
S
-
T
T
R
S
N
I
L
C
M
F
--
I
L
-----------------------
8
PsiBlast_PDB
60.08
29%
-75
- C4 -
4WW3
1
OPSD_TODPA
A:
[149-199]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
F
----
V
W
L
W
S
V
L
W
A
I
G
--
P
I
F
G
W
G
--
A
Y
T
L
E
G
VLC
N
C
S
F
-
D
Y
I
S
R
D
S
-
T
T
R
S
N
I
L
C
M
F
--
I
L
-----------------------
5
PsiBlast_PDB
60.05
29%
-68
- C4 -
3AYM
1
OPSD_TODPA
A:
[157-207]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
F
----
V
W
L
W
S
V
L
W
A
I
G
--
P
I
F
G
W
G
--
A
Y
T
L
E
GVLC
N
C
S
F
-
D
Y
I
S
R
D
S
-
T
T
R
S
N
I
L
C
M
F
--
I
L
-----------------------
19
Fugue
58.36
22%
-72
- C3 -
2KKE
-
?
A:
[1-53]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
G
R
R
P
G
G
G
L
K
----------------------
D
T
K
--
P
V
V
-------
V
R
L
-
Y
P
D
E
I
E
A
-
L
K
S
R
V
P
A
N
T
S
--
M
S
A
Y
I
R
R
I
I
L
N
H
L
E
D
E
---------
2
PsiBlast_PDB
54.80
35%
-77
- C5 -
2ZSU
1
SPEE_PYRHO
A:
[218-256]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
V
Y
----
Y
Y
S
F
P
V
I
G
Y
A
S
--
P
W
A
F
L
V
--
G
V
K
-------
G
S
I
-
D
F
M
K
V
D
A
-
E
K
G
K
K
L
-------------------------------
1
PsiBlast_PDB
52.51
35%
-61
* C5 *
2E5W
2
SPEE_PYRHO
A:
[218-256]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
V
Y
----
Y
Y
S
F
P
V
I
G
Y
A
S
--
P
W
A
F
L
V
--
G
V
K
-------
G
S
I
-
D
F
M
K
V
D
A
-
E
K
G
K
K
L
-------------------------------
21
Fugue
51.14
12%
-193
- C4 -
3PMG
1
PGM1_RABIT
A:
[1-561]
V
K
I
V
T
V
K
T
K
A
Y
PDQKPGTSGLRKRVKVFQSSTN
Y
A
E
N
F
I
Q
S
I
I
S
T
VEPAQRQE
A
T
L
V
V
G
G
DGRFY
M
K
E
A
I
Q
L
I
V
R
I
A
A
A
N
GIG
R
L
V
I
G
Q
NGILS
T
P
A
V
S
C
I
I
R
K
I
KAI
G
G
I
I
L
T
ASHNPGGP
N
G
D
F
G
I
K
F
N
ISNGGPA
P
E
A
I
T
D
K
I
F
Q
I
S
K
TI
E
E
Y
A
ICP
D
L
K
V
DLG
V
L
G
K
Q
Q
F
D
L
ENK
F
K
P
F
T
V
E
I
VDSV
E
A
Y
A
T
M
L
R
N
I
F
D
F
N
A
L
K
E
L
LSGPNR
L
K
I
R
I
DAMHGV
V
G
P
Y
V
K
K
ILCEELGAPANSAVNCVPLEDFGGHHPDPNLTY
A
A
D
L
V
E
T
M
K
SGEH
D
F
G
A
A
F
DGDG
D
R
N
M
I
L
G
KH
G
F
F
V
N
P
S
D
S
V
A
V
I
A
A
NIFS
I
P
Y
F
Q
QTGV
R
G
F
A
R
SMPTS
G
A
L
D
R
V
A
N
A
T
K
I
A
L
Y
E
T
PT
G
W
K
F
F
G
N
L
M
D
ASKL
S
L
C
G
EES
F
G
T
G
SDHIREK
D
G
L
W
A
V
L
A
W
L
S
I
L
A
T
RKQ
S
V
E
D
I
L
K
D
H
W
H
K
F
G
R
N
F
F
T
R
Y
DYEEV
E
A
E
G
A
T
K
M
M
K
D
L
E
A
L
M
FDRSFV
G
K
Q
F
S
A
N
D
K
V
Y
T
VEKAD
N
F
E
Y
H
DPV
D
G
S
V
S
K
N
Q
G
L
R
L
I
FAD
G
S
R
I
I
F
R
L
S
G
T
G
--
S
A
G
A
T
I
--
R
L
Y
-------
I
D
S
-
Y
E
K
D
N
A
K
-
I
N
Q
D
P
Q
V
M
L
A
--
P
L
I
S
I
A
L
K
V
S
Q
L
Q
E
R
T
G
R
T
APTVIT
10
HHSearch
49.57
27%
-169
- C4 -
3S8F
5
COXA_THET8
C:
[5-30]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
K
G
A
L
A
V
I
L
V
--
L
T
L
T
I
L
V
F
W
L
G
V
Y
A
V
F
---------
13
HHSearch
49.40
29%
-143
- C4 -
2K1K
-
EPHA1_HUMAN
A:
[548-564]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
A
V
I
F
G
L
L
L
G
A
A
L
L
L
G
--------
26
Fugue
46.91
20%
2
- C1 -
1MKN
-
MK_HUMAN
A:
[1-59]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KKK
D
K
V
K
K
G
G
P
G
S
E
C
A
----
E
W
A
W
G
P
C
T
P
S
S
--
K
D
C
G
V
G
F
R
E
G
T
-------
C
G
A
-
Q
T
Q
R
I
R
C
-
R
V
P
------------------
C
N
W
K
K
E
F
G
--------
24
Fugue
45.11
19%
-105
- C4 -
1W8X
-
VP16_BPPRD
P:
[1-116]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
K
K
K
L
L
Y
W
V
G
G
G
----
L
V
L
I
L
I
W
L
W
F
R
NR
P
A
A
Q
V
A
--
S
N
W
-------
E
G
P
-
P
Y
M
T
Y
N
Q
P
Q
A
G
S
V
T
L
P
V
A
DS
I
T
S
Q
L
N
D
Y
A
S
S
L
N
D
Y
L
A
S
Q
AG----
25
Fugue
22.36
21%
48
* C4 *
2MES
-
DLG4_HUMAN
B:
[1-19]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
--
D
C
L
-------
C
I
V
-
T
T
K
K
Y
R
Y
-
Q
D
E
D
T
--------------------------------
17
HHSearch
21.21
14%
16
- C4 -
1IFL
-
CAPSD_BPIKE
A:
[29-51]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
P
--
V
V
T
T
V
V
--
V
A
G
-------
L
V
I
R
L
F
K
K
F
S
S
-
K
------------------------------------
18
HHSearch
19.71
18%
-18
- C4 -
1FDM
-
CAPSD_BPFD
A:
[26-48]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
A
--
M
V
V
V
I
V
--
G
A
T
-------
I
G
I
K
L
F
K
K
F
T
S
-
K
------------------------------------
9
HHSearch
19.44
28%
27
- C2 -
3WXX
-
?
B:
[113-139]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
S
G
L
A
S
K
I
F
----
G
W
I
S
A
I
A
S
M
-----------------------------------------------------------------------
14
HHSearch
19.38
14%
14
- C4 -
1IFK
-
CAPSD_BPIF1
A:
[27-49]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
A
--
L
V
V
L
V
V
--
G
A
T
-------
V
G
I
K
L
F
K
K
F
V
S
-
R
------------------------------------