@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA1372: (2016-03-25 )
MFKFLKKTQAFTLIEMLLVLLIISLLLILIIPNIAKQTAHIQSTGCNAQVKMVNSQIEAYALKHNRNPSSIEDLIADGFIKEAQKTCKSGETITISNGEAVAN
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10...-.....20.----......----.30.----.......40........50-....------..-...60-.---.....-..-----70-.....----------------..-.--80------...-----------....-..90......------..100.-----------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
F
K
F
L
K
K
T
Q
A
F
T
L
I
-
E
M
L
L
V
L
L
I
----
I
S
L
L
L
I
----
L
IIP----
N
I
A
K
Q
T
A
H
I
QSTGC
N
A
Q
V
--
K
M
VN------SQ-
I
E
A
Y
A
-L---KHNR
N
-
P
S
-----
S
I
-
E
D
L
I
A
----------------
D
G
-
F
--
I
-------
K
E
A
-----------
Q
K
TC-KSG
E
T
I
T
ISN------GEAVAN-----------------------------------
7
HHSearch
72.24
21%
-38
- C5 -
3G20
2
?
A:
[5-91]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
----
L
V
V
P
----
N
L
M
G
N
K
D
K
A
D
R
Q
K
V
M
S
D
L
--
V
A
L
E
------
S
T
-
L
D
M
Y
R
-
L
---
D
N
N
R
Y
-
P
T
-----
T
E
-
Q
G
L
R
A
L
V
SKPTVQPEPRNYRQ
D
G
-
Y
--
I
-------
R
R
------------
L
P
Q
D
-
P
W
G
G
D
Y
Q
L
L
N
------
P
G
---------------------------------------
33
Fugue
68.04
16%
-75
* C4 *
4FO9
16
PIAS2_HUMAN
A:
[17-298]
-----------------------------------------------------------------------------------------------QGQLKNLPFYDVLDVLIKPTSLVQSSIQR
F
Q
E
K
F
F
I
F
A
L
T
P
Q
Q
V
R
E
I
C
I
SRDFLPGGRRDYTV
Q
V
Q
L
R
L
C
L
ATCPQ
E
D
N
Y
P
NS
L
C
I
K
V
NG
K
L
F
P
L
PGIEQ
K
R
P
G
R
P
L
NITSLVRLSSA
V
P
N
Q
I
S
I
S
W
A
S
E
I
G
K
N
Y
S
M
S
V
Y
L
V
R
Q
L
T
S
A
M
L
L
Q
R
L
K
M
KIRN
P
D
H
S
R
A
L
I
K
E
K
L
T
T
-
S
L
R
V
S
L
M
C
----
P
L
G
K
M
R
----
L
T
I
P
----
C
R
A
V
T
C
T
H
L
Q
C
F
D
A
A
L
Y
L
--
Q
M
N
E
------
K
K
-
P
T
W
I
C
-
P
---
V
C
D
K
--
K
A
-----
A
Y
-
E
S
L
I
L
----------------
D
G
-
L
--
F
-------
M
E
I
-----------
L
N
D
C
-
S
D
V
D
E
I
K
F
Q
E
------
G
S
W
C
P
------------------------------------
1
PsiBlast_PDB
67.40
31%
-116
- C5 -
3SOK
-
FMAA_DICNO
A:
[1-64]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
T
L
I
-
E
L
M
I
V
V
A
I
----
I
G
I
L
A
A
----
F
A
I
P
A
Y
N
D
Y
I
A
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A
A
E
G
L
T
L
A
D
G
L
K
--
V
R
I
S
------
D
H
-
L
E
S
G
E
-
C
---
K
G
D
A
N
-
P
A
-----
S
-----------------------------------------------------------------------------------------------------------------
9
HHSearch
61.46
26%
-114
- C5 -
1OQW
-
FMPA_PSEAI
A:
[1-58]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
T
L
I
-
E
L
M
I
V
V
A
I
----
I
G
I
L
A
A
----
I
A
I
P
----
Q
Y
Q
N
Y
V
A
R
S
E
G
A
S
A
L
A
S
V
--
N
P
L
K
------
T
T
-
V
E
E
A
L
-
S
---
R
G
W
S
V
-
K
------------------------------------------------------------------------------------------------------------------------
8
HHSearch
59.29
26%
-98
- C5 -
2HI2
2
FMM1_NEIGO
A:
[1-62]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
T
L
I
-
E
L
M
I
V
I
A
I
----
V
G
I
L
A
A
----
V
A
L
P
----
A
Y
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D
Y
T
A
R
A
Q
V
S
E
A
I
L
L
A
--
E
G
Q
K
------
S
A
-
V
T
E
Y
Y
-
L
---
N
H
G
K
W
-
P
E
-----
N
N
-
T
--------------------------------------------------------------------------------------------------------------
35
Fugue
57.58
10%
-99
- C5 -
4TRQ
-
?
B:
[1-286]
---------------------------------------------------------------------------------------------------------------GKQRI
L
L
Y
L
V
N
K
L
N
N
I
Y
F
R
I
ESPQLC
S
N
I
F
K
N
F
QP
K
S
M
L
A
H
F
NEYQ
L
D
Q
Q
I
E
Y
R
Y
L
L
G
R
Y
Y
L
L
N
SQ
V
H
N
A
F
V
Q
F
N
E
A
F
Q
S
L
L
N
LPLTN
Q
A
I
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R
N
G
T
R
I
L
N
Y
M
I
P
T
G
L
I
L
GKMVKWGPLRPFLS
Q
E
T
I
D
N
W
S
V
L
Y
K
H
V
R
Y
GN
I
Q
G
V
S
L
W
L
R
Q
N
E
R
H
L
C
A
-
R
Q
L
L
I
V
L
L
----
E
K
L
P
M
V
----
T
Y
R
N
----
L
I
K
T
V
I
K
S
W
T
T
E
W
G
Q
N
K
L
P
Y
S
L
I
E
------
R
V
-
L
Q
L
S
I
-
G
---
P
T
F
E
D
-
P
G
-----
A
Q
-
E
I
T
I
Y
----------------
N
G
-
I
HS
P
-------
K
N
V
-----------
E
N
V
L
-
V
T
L
I
N
L
G
L
L
R
------
A
N
C
F
P
Q
LQ
L
C
V
V
K
KTTM
I
Q
E
I
V
PP
V
N
E
R
I
T
K
M
F
PAHSHVLW
11
HHSearch
57.42
15%
-44
- C5 -
1T92
1
GSPG_KLEPN
A:
[4-80]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
K
A
D
R
Q
K
V
V
S
D
L
--
V
A
L
E
------
G
A
-
L
D
M
Y
K
-
L
---
D
N
S
R
Y
-
P
T
-----
T
E
-
Q
G
L
Q
A
LVSAPSAEPHARNYPE
G
G
-
Y
--
I
-------
R
-
R
-----------
L
P
Q
D
-
P
W
G
S
D
Y
Q
L
L
S
------
P
G
---------------------------------------
5
PsiBlast_PDB
56.98
28%
27
- C5 -
2GYQ
8
?
A:
[39-118]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
E
Q
A
T
N
R
D
L
S
Q
G
L
T
S
H
L
--
E
E
T
Q
------
K
Q
-
I
E
R
L
D
-
Q
V
F
K
K
L
G
Q
K
-
P
S
-----
G
V
-
N
C
P
A
I
----------------
D
G
-
L
--
I
-------
K
E
A
-----------
D
E
T
A
-
G
E
I
A
D
K
T
V
L
D
------
A
A
I
V
A
N
-----------------------------------
12
HHSearch
56.86
14%
-39
- C5 -
3GN9
2
?
A:
[4-81]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
N
K
E
K
A
D
Q
Q
K
A
I
T
D
I
--
V
A
L
E
------
N
A
-
L
D
M
Y
K
-
L
---
D
N
S
V
Y
-
P
T
-----
T
D
-
Q
G
L
E
A
LVTKPSSPEPRNYRN-
G
G
-
Y
--
I
-------
K
-
R
-----------
L
P
K
D
-
P
W
G
N
E
Y
Q
Y
M
S
------
P
G
---------------------------------------
10
HHSearch
55.35
24%
-107
- C5 -
3SOK
-
FMAA_DICNO
A:
[1-59]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
T
L
I
-
E
L
M
I
V
V
A
I
----
I
G
I
L
A
A
----
F
A
I
P
----
A
Y
N
D
Y
I
A
R
S
Q
A
A
E
G
L
T
L
A
--
D
G
L
K
------
V
R
-
I
S
D
H
L
-
E
---
S
-
G
E
C
-
K
G
-----
D
-----------------------------------------------------------------------------------------------------------------
13
HHSearch
55.18
19%
-30
- C5 -
2KEP
-
GSPG_PSEAE
A:
[41-118]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
P
D
Q
A
K
V
T
V
A
K
G
D
I
--
K
A
I
A
------
A
A
-
L
D
M
Y
K
-
L
---
D
N
F
A
Y
-
P
S
-----
T
Q
-
Q
G
L
E
A
L
V
KKPTGNPQPKNWNK
D
G
-
Y
--
L
-------
K
K
------------
L
P
V
D
-
P
W
G
N
P
Y
Q
Y
L
A
------
P
G
---------------------------------------
37
Fugue
51.52
9%
-66
- C3 -
2I71
1
CSX1_SULSO
A:
[19-398]
FQGM
A
S
I
V
F
S
T
I
GNPKGYQ
K
V
T
Y
E
I
DG
E
K
F
E
SNV
S
V
L
A
L
R
D
L
L
KVD
K
T
V
V
I
L
G
ISVADVYNCKYAD
Y
R
S
C
K
E
C
I
I
Q
N
S
K
N
D
L
GIS
E
S
Y
V
V
A
P
N
V
Y
QKFKGK
P
D
H
Y
F
T
Y
I
Y
Y
H
S
L
R
I
L
E
K
E
GIN
E
V
F
I
D
TTHGINY
M
G
V
L
A
K
E
A
I
Q
L
A
V
S
A
Y
A
A
K
S
E
K
E
V
K
V
S
L
Y
N
S
D
PVGKDVS
D
T
V
K
LHEI
E
A
I
K
I
S
P
L
S
G
L
K
Y
V
T
Y
Q
I
L
N
KDKNFFNKIFSDSV
N
A
I
P
R
F
A
T
A
L
D
N
GL
F
I
Y
L
S
E
KDS
S
L
H
L
K
R
L
E
D
D
L
S
K
D
P
L
L
T
P
S
E
N
E
I
N
V
V
Y
K
D
M
K
Y
A
L
S
H
A
L
----
F
Y
V
I
S
R
F
SGN
V
D
L
D
----
T
L
R
H
Y
A
E
T
Y
A
D
K
V
T
R
A
I
I
--
E
N
E
V
------
D
K
-
I
E
K
Y
Q
M
G
---
S
E
R
K
L
-
L
G
-----
E
Y
M
R
I
L
Y
A
H
---------------
G
G
-
L
--
P
-------
Y
A
G
-----------
T
Y
V
Y
-
K
E
K
D
K
V
Y
V
T
Y
------
G
D
K
I
D
E
I
E
R
Q
I------------------------------
32
Fugue
51.41
17%
-58
- C2 -
3F1J
4
MATRX_BDV
A:
[3-142]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SKHSYVELKDKVIVPG
W
P
T
L
M
L
E
I
D
F
V
G
G
T
S
R
N
Q
F
L
-
N
I
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F
L
S
V
K
----
E
P
L
Q
L
P
----
R
E
K
K
----
L
T
D
Y
F
T
I
D
V
E
P
A
G
-
H
S
L
V
--
N
-
I
Y
------
F
Q
-
I
D
D
F
L
-
L
---
L
T
L
N
S
-
L
S
-----
V
Y
-
K
D
P
I
R
----------------
K
Y
M
F
--
L
R
L
N
K
E
Q
S
K
H
A
-----------
I
N
A
A
-
F
N
V
F
S
Y
R
L
R
N
I
G
V
G
PL
G
P
D
I
R
S
S
GP--------------------------------
39
Fugue
50.45
9%
-92
- C4 -
3WZS
1
?
A:
[4-148]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VN
K
I
Y
I
E
N
H
D
L
M
S
K
V
P
V
I
E
ASKESTRDD
W
A
A
L
T
V
V
A
D
L
D
D
I
E
G
Q
E
L
V
-
Y
Y
A
L
R
F
R
K
S
N
DG
V
R
L
D
I
V
----
H
N
P
K
----
D
T
S
R
S
P
S
V
L
A
Q
R
L
K
S
R
E
D
--
K
L
L
D
------
F
T
R
F
L
D
L
E
-
T
---
A
L
E
T
G
-
E
F
-----
E
P
-
D
V
A
Y
D
----------------
A
S
-
L
--
A
-------
N
F
L
-----------
A
S
S
N
M
K
A
G
D
N
F
V
I
L
N
------
G
R
V
L
G
P
ITS--------------------------------
36
Fugue
49.44
31%
-177
* C5 *
4XTR
-
?
G:
[15-36]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
W
R
V
Y
L
L
I
-
V
L
L
V
M
L
L
F
----
I
F
L
I
M
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
43.66
10%
-66
- C5 -
1Q5F
-
?
A:
[29-102]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
D
A
G
T
E
L
T
N
Y
--
Q
T
L
A
------
T
N
-
T
I
G
M
M
-
K
---
G
V
D
G
Y
-
A
F
TSG
A
K
M
T
-
D
T
L
I
Q
----------------
A
G
-
A
--
A
-------
K
G
M
T
V
S
G
DPASG
S
A
T
L
W
N
-
S
W
G
G
Q
I
V
V
A
P
-----------------------------------------------
29
HHSearch
42.55
16%
-186
- C5 -
2K21
-
KCNE1_HUMAN
A:
[42-66]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-
E
A
L
Y
V
L
M
V
----
L
G
F
F
G
F
----
F
T
L
G
----
I
M
L
S
Y
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
40.70
38%
6
- C5 -
1H3L
-
SIGR_STRCO
A:
[46-71]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
-
M
Y
S
A
A
-
L
---
R
M
T
R
N
-
P
A
-----
D
A
-
E
D
L
V
Q
----------------
E
T
-
Y
--
A
-------
K
---------------------------------------------------------------------------
38
Fugue
39.10
23%
-23
- C5 -
3QOQ
2
?
A:
[13-62]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
Y
S
S
R
T
A
D
K
--
F
V
V
R
LPEG
M
R
E
Q
-
I
A
E
V
A
-
R
---
S
H
H
R
S
M
N
S
-----
E
I
-
I
A
R
L
E
----------------
Q
S
-
L
--
L
-------
Q
E
G
-----------
A
-------------------------------------------------------------
27
HHSearch
36.61
14%
-120
- C5 -
2L16
-
TATAD_BACSU
A:
[4-17]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
I
G
I
P
-
G
L
I
L
I
F
V
I
----
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------