@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : jhp_1209: (2015-12-21 )
MNIKKRLSDWEYQWAVALVYTICISINARIFYDIDGSASDSIFDPKNSYYMWLVGLIAALLSNLLFDPRGRDCYKSFQVRYPRFLKAIFKARFFGAFYNAVLGSRLRDFYVMLLTMPFIAAIHEISAYCGHPSNFLVEGLVMLGLVCVFGICSRLCAKLGW
Atome Classification :
(18 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10......------.-.20........---30........-----40........50....----....60..------......70....----...------.---80---------.......--.-----90...--..--------...100....---...110.-----------------..--------..----..-120.-.-.....--130--------.......140......-.--------.------------.150.......160------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
N
I
K
K
RLSDW
E
Y
Q
W
A
V
A
------
L
-
V
Y
T
I
C
I
SIN
A
R
---
I
F
Y
DIDGSAS-----DSIFDPKN
S
Y
Y
M
W
L
V
G
----
L
I
A
A
L
L
S
N
------LLFDPR
G
R
D
C
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K
----
S
F
Q------V---R
Y
---------
P
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K
A
I
--
F
-----
K
A
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--
G
A
--------
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N
A
V
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G
S
R
L
---
R
D
F
Y
V
M
L
-----------------
L
T
--------
M
P
----
F
I
-
A
A
I
H
-
E
-
I
S
A
YC--GH
P
--------
S
N
F
L
V
E
G
L
--
V
M
L
G
L
V
-
C
--------
V
------------
F
G
I
C
S
R
L
C
A
KLGW-------------------------------------------------------------------------------------------------------------------
16
Fugue
86.42
17%
-169
* C5 *
5DGG
2
?
A:
[3-184]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
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KSQGR
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-----------------
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----
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--------
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T
R
A
L
V
-------------------------------------------------------------------------------------------------------------------
20
Fugue
82.70
16%
-161
- C5 -
3HL6
1
?
A:
[2-214]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
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---------
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--
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ELHDG
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FED
E
Y
F
M
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G
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-----------------
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YQSSNTD
V
I
A
----
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M
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-
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DENAT
Q
E
D
------------
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Y
Y
SLSKL-----------------------------------------------------------------------------------------------------------
13
Fugue
74.43
18%
-107
- C6 -
4KPP
4
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A:
[2-396]
DF
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VGGE
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DGI
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GHIS
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---
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--
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-----
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R
F
R
V
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A
--------
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M
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A
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---
N
Q
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L
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-----------------
G
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--------
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A
----
I
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-
Y
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A
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--
L
P
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V
--
L
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A
A
Q
-
S
--------
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------------
F
A
V
A
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A
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PG
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R
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V
K
R
L
I
S
LE---------------------------------------------------------
18
Fugue
72.41
18%
-138
- C2 -
4F0D
1
PAR16_HUMAN
A:
[2-271]
------------------------------------------------------------------------------------------------------------------------------------------------------------MG
W
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A
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---
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LPN
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A
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D
----
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KV----
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A
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F
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----
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------
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---
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GAPH
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GE
R
D
---
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H
G
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R
L
---
E
N
F
H
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I
H
NGLHCHKTSLFG
E
G
T
Y
L
T
--------
S
D
----
L
S
-
L
A
L
I
-
Y
-
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--
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Q
--------
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G
P
I
L
--
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A
V
C
-
E
--------
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IDHPDK
Y
-----
F
V
V
T
N
N
Q
L
L
R
V
K
Y
L
L
V
Y
S
Q-------------------------------------------------------------------------------------------------------------
15
Fugue
68.80
18%
-129
- C6 -
4P0G
9
MLTF_PSEAE
A:
[7-435]
-------------------APT
A
L
E
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V
Q
K
E
G
V
L
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NSPA
T
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DN
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REGGPALAAAG
L
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P
G
REDDAS
V
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S
HTY
L
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R
N
GQQRPTRPEDLVGKR
I
M
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GS
S
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A
E
L
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Q
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PE
L
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DAVE
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---
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--------------
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DDD
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----
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L
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------
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---
R
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---------
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D
V
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V
-----
G
A
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--
A
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--------
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Q
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E
---
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F
K
Q
S
G
-----------------
K
Q
--------
L
D
TD
W
R
L
L
-
A
A
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Y
-
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E
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L
W
QP
G
A
T
--------
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K
T
G
V
R
G
L
--
M
M
L
T
-----------------------------
N
R
T
A
Q
A
M
G
V
SNRLD
P
K
Q
S
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G
G
S
K
Y
F
V
Q
I
R
S
E
LPESIKE
P
D
R
S
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F
A
L
A
A
Y
N
IG
G
A
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E
D
A
R
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M
A
E
K
E
GLNPNK
W
L
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M
LPRLAQKQWYAKTRYGYAR
G
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11
Fugue
68.28
12%
-158
- C6 -
1T6S
14
?
A:
[1-162]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Q
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---
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RGRADSPGR
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F
H
L
-------------------------------------------------------------------------------------------------------------------
19
Fugue
59.97
15%
-105
- C6 -
1S12
2
?
A:
[1-94]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
---
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F
F
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F
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E
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A
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M
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--------
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S
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-
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R
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E
-
V
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N
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S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
51.50
11%
-86
- C6 -
4LTB
-
?
A:
[2-172]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
S
Q
A
S
A
D
L
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L
R
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A
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E
E
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------
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E
I
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E
Q
S
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-----------------
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E
----
F
L
-
E
K
A
S
-
K
-
L
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V
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I
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EVEL
N
H
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I
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T
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L
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-
N
--------
E
------------
L
K
Q
C
I
G
R
L
Q
E
L
T
P
-------------------------------------------------------------------------------------------------------------------
6
HHSearch
49.27
28%
-104
- C7 -
1OMH
1
?
A:
[164-207]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
V
I
L
N
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M
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S
D
G
Q
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R
A
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K
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------------------
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E
I
--
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Y
L
--
G
A
--------
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Y
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A
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A
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E
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---
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Q
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Y
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G
-
N
F
D
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-
A
-
H
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--
Q
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E
--------
G
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E
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--
I
A
E
W
Y
A
-
A
--------
R
------------
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L
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V
S
L
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Q
K
Q
-------------------------------------------------------------------------------------------------------------------
17
Fugue
48.59
15%
-60
* C6 *
1G1X
-
RS18_THET8
C:
[30-82]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
----
L
R
D
Y
R
N
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--
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A
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F
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
36.58
6%
-41
* C7 *
2L5O
-
?
A:
[108-143]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
I
G
K
K
G
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Y
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GE
P
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--
W
-----
R
N
S
D
A
--
E
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--------
H
H
H
H
H
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
35.09
50%
-27
- C3 -
1MU5
-
TOP6B_SULSH
A:
[333-360]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
----
D
F
-
A
A
S
I
T
R
K
P
K
A
Y
Q
--
G
H
P
----------
F
I
V
E
A
G
--
V
A
F
G
G
S
-
I
--------
P
------------
V
G
E
E
P
I
V
L
R
Y
A
N
K
-------------------------------------------------------------------------------------------------------------------
2
HHSearch
32.24
21%
-46
- C7 -
2KNC
-
ITB3_HUMAN
B:
[685-712]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
M
G
--
S
K
G
--------
P
D
I
L
V
V
L
L
--
S
V
M
G
A
I
-
L
--------
L
------------
I
G
L
A
A
L
--------------------------------------------------------------------------------------------------------------------------
1
HHSearch
30.84
27%
66
- C4 -
1R8O
-
?
A:
[3-24]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
D
T
D
G
--------
K
P
I
E
N
D
G
A
E
Y
Y
I
L
P
S
V
----
R
G
K
G
G
G
L
V
------
L
A
K
S
G
G
E
K
C
P
L
S
----
V
V
Q
------
S
---
P
S
---------
E
L
S
N
G
L
P
--
V
-----
R
F
K
A
S
--
P
R
--------
S
K
Y
I
S
V
G
M
L
L
---
G
I
E
V
I
E
S
-----------------
P
E
--------
C
A
----
P
K
-
P
S
M
W
-
S
-
V
K
S
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
26.25
44%
368
- C1 -
1YTR
-
PLNA_LACPL
A:
[18-26]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
L
F
K
K
W
G
W
-------------------------------------------------------------------------------------------------------------------
4
HHSearch
22.80
42%
244
- C7 -
2DT6
-
SF3A1_HUMAN
A:
[88-99]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
P
Y
H
A
Y
Y
R
H
K
V
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
22.08
60%
161
- C7 -
2KEG
-
?
A:
[16-30]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
--
G
A
--------
V
E
R
A
V
L
G
G
S
----
R
D
Y
N
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
17.52
50%
122
- C7 -
1G92
-
POTX_PARCV
A:
[11-24]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-----------------
M
T
--------
P
P
----
V
I
-
Q
A
I
H
-
D
-
A
Q
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------