@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0302: (2016-03-14 )
MKKTVHGWEIISSLDVRVYQDEAGGVAILVDRDNFGDQVPVLLNFGDDGVDIKALSHLTKSVRVSLDKKVRIEWHDEYFEERTQAMECIEVERD
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------.........10........20---..-----.------.....---.30------........40...------.-.------..---------.50-----....-....60-.--......--------.--.-------70....----....80........90...-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------MKKTV
H
G
W
E
I
I
S
SL
D
V
R
V
Y
Q----DE-----A------G
G
V
A
I
---
L
V
D------RDNFGDQV
P
V
L
L
N
------F-G------DD---------GV
D
-----
I
K
A
L
-
S
H
L
T
K
--
S
--
V
R
V
SLD--------
K
--
K
-------
V
R
I
E
W
H
----
D
E
Y
F
E
E
R
T
Q
A
M
E
C
I
EVERD-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
80.58
16%
-77
* C3 *
2IFE
-
IF3_ECOLI
A:
[90-180]
-------------------------------------------------------------------------------------------------------------------------------------------
V
I
Q
V
K
E
I
K
F
R
P
G
T
D
E
G
D
Y
Q
----
V
K
-----
L
------
R
S
L
I
R
---
F
L
E
------
E
---
G
D
K
A
K
I
T
L
R
------
F
R
G
------
R
E
---------
M
A
H
-----
Q
Q
I
G
-
M
E
V
L
N
--
R
--
V
K
D
D
L
Q
--------
E
--
L
-------
A
V
V
E
S
F
----
P
T
K
I
E
G
R
Q
M
I
M
V
L
A
P
K
K
K
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
78.27
18%
-52
- C2 -
1PRT
-
TOX4_BORPE
D:
[1-110]
----------------------------------------------------------------------------------------------------------------------------------------DV
P
Y
V
L
V
K
T
N
M
V
V
T
S
V
A
M
K
P
Y
E
----
V
T
PT
R
M
L
V
------
C
G
I
A
A
---
K
L
G
------
A
A
A
S
S
P
D
A
H
V
P
F
C
------
F
-
G
------
K
D
LKRPGSS
P
M
E
V
M
-----
L
R
A
V
-
F
M
Q
Q
R
--
P
--
L
R
M
F
L
G
-----------
P
-------
K
Q
L
T
F
E
----
G
K
P
A
L
E
L
I
R
M
V
E
C
-
S
G
K
Q
D
CP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
Fugue
63.60
20%
-44
- C3 -
2CAY
1
VPS36_YEAST
A:
[7-138]
--------------------------------------------------------------------------------------------------------------------------HHMEY
W
H
Y
V
E
T
T
SSGQ
P
L
L
R
E
G
E
K
D
I
F
I
D
Q
S
V
G
L
Y
H
----
G
K
-----
S
KILQRQ
R
G
R
I
F
---
L
T
S
Q
R
I
I
Y
I
D
D
A
K
P
T
Q
N
S
L
G
L
E
------
L
-
D
------
D
L
---------
A
Y
V
-----
N
Y
S
S
-
G
F
L
T
R
--
S
--
P
R
L
I
L
F
F
KDPSSST
E
--
F
-------
V
Q
L
S
F
R
KSDG
V
L
F
S
Q
A
T
E
R
A
L
E
N
I
L
T
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
Fugue
61.90
14%
-73
- C3 -
4Q7O
8
?
A:
[4-136]
--------------------------------------------------------------------------------------------------------------------------------MKNNIF
L
N
L
N
K
K
S
I
N
N
N
H
F
V
I
S
I
F
F
E
T
I
Y
Q
FET
K
D
T
-----
L
------
L
E
C
F
K
---
N
I
T
------
T
T
G
H
F
G
V
I
G
A
Q
Y
E
K
I
DATR
W
-
I
------
G
D
---------
Y
E
E
-----
V
N
G
F
-
E
Y
I
D
K
AP
S
--
I
Y
F
S
V
G
--------
D
--
D
FNPE
E
L
I
I
P
I
N
L
A
----
Y
H
Y
F
N
I
A
I
S
D
F
L
I
A
H
P
E
Y
Q
K
K
C
K
E
I
Q
K
T
Y---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
59.59
20%
-28
- C2 -
3HJH
1
MFD_ECOLI
A:
[5-450]
YR
Y
T
L
P
V
K
AG
E
Q
R
L
L
G
ELTGA
A
C
A
T
L
V
A
E
I
A
E
R
HA
G
P
V
V
L
I
A
PD
M
Q
N
A
L
R
L
H
D
E
I
S
Q
F
T
DQ
M
V
M
N
LADWETLPYDSFSPH
Q
D
I
I
S
S
R
L
S
T
L
Y
Q
LPTMQ
R
G
V
L
I
V
P
V
N
T
L
M
Q
R
V
C
P
H
S
F
L
H
G
H
A
L
V
M
K
K
GQRLS
R
D
A
L
R
T
Q
L
D
S
A
G
Y
R
H
V
D
Q
V
M
----------
E
-----
H
------
G
E
Y
A
T
R
GA
L
L
D
------
L
F
P
M
G
S
E
L
P
Y
R
L
D
------
F
-
F
------
D
D
-----------
E
-----
I
D
S
L
-
R
V
F
D
V
--
D
--
S
Q
R
T
L
E
--------
E
VE
A
-------
I
N
L
L
P
A
----
H
E
F
P
T
D
K
A
A
I
E
L
F
R
S
Q
W
R
D
T
F
E
V
K
RDPEH
I
Y
Q
Q
V
S
K
GTLPAGIEYW
Q
P
L
F
F
SEPLPPLFSYFPAN
T
L
L
V
N
T
G
D
L
E
T
S
A
E
R
F
Q
A
D
T
L
A
R
F
E
N
R
GVDPM
R
P
L
L
P
PQSLWLR
V
D
E
L
F
S
E
L
K
N
W
P
R
V
Q
L
K
TEHLPTKAANANL
G
F
Q
K
L
PDLAVQAQQKAPL
D
A
L
R
K
F
L
E
T
FD
G
P
V
V
F
S
V
ESEGRREA
L
G
E
L
L
A
R
I
KIA
P
Q
R
I
MRLDEASDR
G
R
Y
L
M
I
G
AAE
H
G
F
V
DTVRN
L
A
L
I
C
ESDLL
25
HHSearch
56.48
11%
-73
- C2 -
2F1L
4
RIMM_PSEAE
A:
[122-183]
----------------------------------------------------------------------------------------------------------------------------------------------------------
K
V
I
D
----
Q
G
-----
R
------
Q
L
L
G
V
---
I
D
H
------
L
L
E
T
G
A
N
D
V
M
V
V
K
------
P
-
C
AGSLD-
D
R
---------
E
R
L
-----
L
P
Y
T
-
G
Q
C
V
L
--
S
--
I
D
L
A
-
A
--------
G
--
E
-------
M
R
V
D
W
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
56.00
15%
-72
- C2 -
3H9N
3
RIMM_HAEIN
A:
[104-172]
----------------------------------------------------------------------------------------------------------------------------------------------------------
T
V
V
N
----
L
E
-----
G
------
Y
T
M
G
T
---
V
T
E
------
M
M
E
T
G
S
N
D
V
L
V
V
K
------
A
-
N
TKDAFG
K
Q
---------
E
R
L
-----
I
P
F
L
Y
E
Q
V
V
K
--
R
--
V
D
L
T
-
T
--------
K
--
T
-------
I
E
V
D
W
D
----
A
G
F
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
55.23
31%
-17
- C4 -
1BI2
-
DTXR_CORDI
A:
[123-178]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
------
R
S
P
F
G
N
P
I
P
G
L
D
E
------
L
-
G
------
V
---------------------
P
-
G
T
R
V
I
--
D
--
A
A
T
S
M
P
--------
R
--
K
-------
V
R
I
V
Q
I
----
N
E
I
F
Q
V
E
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
55.10
44%
-6
- C6 -
2IFV
1
A:
[74-116]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
-
S
F
L
L
K
--
S
PI
A
P
C
S
L
D
--------
K
--
R
-------
V
I
L
I
F
H
----
D
E
F
S
S
E
R
G
P
R
M
C
R
F
I
R
E
R
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
54.17
29%
-22
* C4 *
3GLX
1
DTXR_CORDI
A:
[123-179]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
------
R
S
P
F
G
N
P
I
P
G
L
D
E
------
L
-
G
---------------------------
V
P
-
G
T
R
V
I
--
D
--
A
A
T
S
M
P
--------
R
--
K
-------
V
R
I
V
Q
I
----
N
E
I
F
Q
V
K
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
53.29
31%
7
- C4 -
1G3S
-
DTXR_CORDI
A:
[123-179]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
------
R
S
P
F
G
N
P
I
P
G
L
D
E
------
L
-
G
------
V
---------------------
P
-
G
T
R
V
I
--
D
--
A
A
T
S
M
P
--------
R
--
K
-------
V
R
I
V
Q
I
----
N
E
I
F
Q
V
E
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
53.12
31%
-19
- C4 -
2QQA
1
DTXR_CORDI
A:
[123-176]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
------
R
S
P
F
G
N
P
I
P
G
L
D
E
------
L
-
G
------
V
--------------------
A
P
-
G
T
R
V
I
--
D
--
A
A
T
S
M
P
--------
R
--
K
-------
V
R
I
V
Q
I
----
N
E
I
F
Q
V
E
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
52.74
31%
1
- C4 -
1BI1
-
DTXR_CORDI
A:
[123-178]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
------
R
S
P
F
G
N
P
I
P
G
L
D
E
------
L
-
G
------
V
---------------------
P
-
G
T
R
V
I
--
D
--
A
A
T
S
M
P
--------
R
--
K
-------
V
R
I
V
Q
I
----
N
E
I
F
Q
V
E
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
51.77
31%
-5
- C4 -
1G3T
-
DTXR_CORDI
A:
[123-178]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
------
R
S
P
F
G
N
P
I
P
G
L
D
E
------
L
-
G
------
V
---------------------
P
-
G
T
R
V
I
--
D
--
A
A
T
S
M
P
--------
R
--
K
-------
V
R
I
V
Q
I
----
N
E
I
F
Q
V
E
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
51.62
31%
-9
- C4 -
1G3W
1
DTXR_CORDI
A:
[123-179]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
------
R
S
P
F
G
N
P
I
P
G
L
D
E
------
L
-
G
------
V
---------------------
P
-
G
T
R
V
I
--
D
--
A
A
T
S
M
P
--------
R
--
K
-------
V
R
I
V
Q
I
----
N
E
I
F
Q
V
E
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
50.12
16%
-28
* C5 *
3ENU
-
?
A:
[35-113]
----------------------------------------------------------------------------------------------------------------------------------------------------
F
V
P
V
Q
V
S
A
E
L
----
E
N
-----
R
------
G
C
W
V
K
---
F
F
D
------
K
K
N
F
Q
G
D
S
L
F
L
S
G
--------
P
------
A
T
---------
L
P
R
LIGPF
G
Y
D
W
-
E
N
K
V
R
--
S
--
V
K
V
G
P
R
--------
A
--
N
-------
L
T
I
F
D
N
----
H
N
Y
R
D
E
D
K
F
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
48.93
31%
30
- C4 -
2DTR
1
DTXR_CORDI
A:
[123-178]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
------
R
S
P
F
G
N
P
I
P
G
L
D
E
------
L
-
G
------
V
---------------------
P
-
G
T
R
V
I
--
D
--
A
A
T
S
M
P
--------
R
--
K
-------
V
R
I
V
Q
I
----
N
E
I
F
Q
V
E
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
48.11
23%
1
- C3 -
1RRZ
-
GLGS_ECOLI
A:
[1-66]
------------------------------------------------------------------------------------------------------------------------------------------
M
D
H
S
L
N
S
L
N
N
F
D
F
L
A
R
S
F
A
R
----
M
H
-----
A
------
E
G
--------------------------------------------
R
---------
P
V
D
-----
I
L
A
V
-
T
G
N
-----------
M
D
--------
E
--
E
-------
H
R
T
W
F
C
----
A
R
Y
A
W
Y
C
Q
Q
M
M
Q
A
R
E
L
E
L
E
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
47.77
31%
2
- C4 -
1P92
-
DTXR_CORDI
A:
[123-176]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
------
R
S
P
F
G
N
P
I
P
G
L
D
E
------
L
-
G
----------------------------
P
-
G
T
R
V
I
--
D
--
A
A
T
S
M
P
--------
R
--
K
-------
V
R
I
V
Q
I
----
N
E
I
F
Q
V
E
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
47.67
31%
-1
- C4 -
2QQ9
1
DTXR_CORDI
A:
[123-178]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
------
R
S
P
F
G
N
P
I
P
G
L
D
E
------
L
--------------------------------
G
T
R
V
I
--
D
--
A
A
T
S
M
P
--------
R
--
K
-------
V
R
I
V
Q
I
----
N
E
I
F
Q
V
E
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------