@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0311: (2016-03-14 )
MGTNRARIDKSIENILKGKNIEEAKLHLPEITSTIKTGFIEKEISEQVYQSIIGVVSGKLSKIYDLDEDKCKEITSDFIKREQWINEIMELVEQDNVTGISDVLLKALKIALGETVKAEQNETYFVEKLLYEIIFLSLENTMQGALETLEEGITIPQIRKEFIKPLADKLFEEDIKTEIPALVLGKTTLAVINNKIADKLKNFGGF
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........--10........20......-.--.30........40..--------------.....----------.-------50-.------........60--------------...---......70---.--------.......-80----------.--..----------..---....90-........100..-----.....---------------110----...---....-.120---..---.--.....130----------..--------......140-.....-------..--150...-....160....-..----.170---...--...-...180----...-....190-----...------.....-200-......---------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGT
N
R
A
R
I
D
--
K
S
I
E
N
I
L
KGKNI
E
E
A
KLH-
L
--
P
E
I
T
S
T
I
K
T
G
F
I
E
K
E
--------------
I
S
E
Q
V
----------
Y
-------
Q
--
S
------
I
I
G
V
VSG
K
L
---------------
S
K
I---YDL
D
E
D
K
C
---
K
--------
E
I
T
S
D
F
I
-
K
-----------
R
--
E
Q
----------
W
I
---
N
E
I
M
E
L
-
V
E
QDNVT
G
I
S
D
V
L
-----
L
K
A
L
K
---------------
I
-
A
----LGE---TVKA-EQN----
E
T
---
Y
--
F
V
E
K
L
L
Y
-----------
E
I
--------
I
F
L
S
L
E
N
T
M
-
Q
G
A
L
E
-------
T
L
--
E
EGIT
I
-
P
Q
I
R
K
E
F
I
K
P
L
-
A
D
----
K
L
-----
F
E
E
--
D
I
K
-TEIP
A
L
----
V
LG-K
T
T
L
A
V
------
I
N
N
------
K
I
A
D
K
-
L
---
K
NFGGF---------------------------
36
Fugue
67.65
15%
-44
- C4 -
5A61
6
?
A:
[2-430]
A
M
A
Q
E
I
E
L
K
F
I
V
NHSA
V
E
A
L
R
D
H
L
N
T
LGGEHH
D
P
V
Q
L
L
N
I
Y
Y
E
T
PDN
W
L
R
G
H
D
M
G
L
R
I
R
G
E
NG
R
Y
E
M
T
M
K
V
A
G
R
V
T
GG
L
H
Q
R
P
E
Y
N
V
A
L
SEPTLDLAQLPTEVWPNGELPADLASRVQPL
F
S
T
D
F
Y
R
E
K
W
L
V
A
V
DD
S
R
I
E
I
A
L
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K
A
GE
F
A
E
P
I
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E
L
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L
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L
LSGD
T
R
A
V
L
K
L
A
N
Q
L
V
SQTG
L
R
Q
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A
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P
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V
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Q
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L
A
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Y
H
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E
--
E
L
W
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------
N
D
A
--------------
A
K
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V
----------
L
-------
A
--
A
------
I
G
L
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R
H
A
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G
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G
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A
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T
--------
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L
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L
T
-
Q
-----------
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--
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A
----------
T
I
---
A
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------
A
V
S
A
V
T
A
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Y
S
T
E
-----
T
A
M
A
K
---------------
L
-
A
----
L
T
E
---
W
L
V
S
-
K
A
W
----
Q
P
---
F
--
L
-
D
A
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A
Q
-----------
G
K
--------
I
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A
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D
I
H
L
S
-------
R
H
--
A
A
------
E
L
K
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V
F
C
Q
P
L
-
G
D
----
R
Y
-----
H
D
Q
L
P
R
L
T
-
R
D
I
D
S
I
----
L
L
L
----
A
G
Y
------
Y
D
P
------
V
V
A
Q
A
W
L
---
E
N
W
Q
G
L
R
H
A
I
A
T
GQ
R
I
E
I
E
H
F
R
N
E
A
N
N
QEPFWL
27
Fugue
65.13
21%
-23
- C1 -
3G3L
10
?
A:
[10-305]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
A
E
A
K
Y
Y
I
A
--
G
T
I
T
D
A
T
T
G
Q
E
L
T
T
A
K
V
T
-
L
GD
K
S
V
T
S
S
F
N
E
Q
V
N
Y
K
A
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G
Y
A
L
V
V
S
A
DG
Y
Y
P
V
K
R
Q
V
----------
Y
L
NQVSDG
Q
--
T
------
S
V
A
T
V
N
V
A
L
V
S
VE
A
A
V
I
P
P
VVPPT
D
P
E
---
T
D
I
N
E
G
E
A
---
T
--------
K
V
A
D
K
A
V
-
E
-----------
V
--
A
K
----------
P
S
---
E
S
T
V
T
D
M
L
A
G
T
T
A
T
P
E
E
K
K
A
-----
L
D
E
T
L
---------------
E
M
A
G
G
M
K
V
G
E
---
T
T
P
E
-
V
L
A
DGSI
L
A
---
I
--
T
P
V
K
F
T
N
-----------
P
I
QD
A
P
A
M
V
P
Y
F
Y
N
E
G
C
E
L
-
T
G
D
V
K
-------
E
V
--
A
A
P
V
A
V
A
A
D
I
Q
K
A
F
L
S
N
A
-
A
K
----
A
L
NMNA
G
F
V
Q
--
K
I
G
Y
T
R
I
S
V
L
NGYS
I
L
G
-
Y
T
I
K
G
Q
------
L
V
S
------
K
K
L
T
F
-
L
ISG
K
Y
Y
E
G
I
V
S
Y
Q
K
S
V
M
I
Y
P
N
Y
Y
S------------
31
Fugue
65.07
15%
-51
- C3 -
2FV2
1
RCD1_HUMAN
A:
[2-268]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------REK
I
Y
Q
W
I
N
E
LSSPET
R
E
N
A
L
L
E
L
S
K
K
R
E
S
V
P
--
D
L
A
P
M
L
W
H
S
F
G
T
I
A
A
L
L
Q
E
I
--
V
N
I
Y
P
S
I
N
P
P
T
L
T
A
H
--------------
Q
S
N
R
V
----------
C
-------
N
A
L
A
------
L
L
Q
C
V
A
S
H
P
---------------
E
T
R
---
S
A
F
L
A
A
H
I
---
P
--------
L
F
L
Y
P
F
L
-
H
TVSKT
R
P
F
E
Y
L
R
--
L
T
----------
S
L
---
G
V
I
G
A
L
-
V
K
T
D
E
Q
E
V
I
N
F
L
L
T
T
EI
I
P
L
C
L
R
---------------
I
-
M
----
E
S
G
---
S
E
L
S
-
K
T
V
----
A
T
---
F
--
I
L
Q
K
I
L
L
D
D
T
G
L
A
Y
I
C
QT
Y
E
--------
R
F
S
H
V
A
M
I
L
-
G
K
M
V
L
-------
Q
L
--
S
K
E
P
S
--
A
R
L
L
K
H
V
V
R
C
Y
-
L
R
L
S
D
N
P
R
-----
A
R
E
--
A
L
R
-
Q
C
L
P
D
Q
----
L
K
D
-
T
T
F
A
Q
V
LKDD
T
T
T
K
R
------
W
L
A
Q
L
-
V
---
K
N
L
Q
E
----------------------------
2
PsiBlast_PDB
63.62
28%
-39
- C2 -
3VBB
-
SYSC_HUMAN
A:
[348-462]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
E
F
----------
Y
-------
Q
--
S
L
G
I
P
Y
H
I
V
N
I
V
S
G
S
L
---------------
N
-------------------------
H
A
A
S
K
K
L
-
D
-----------
L
--
E
A
----------
W
F
PGS
G
A
F
R
E
L
-
V
S
C
S
N
C
T
---
D
Y
Q
-----
A
R
R
L
R
---------------
I
-
R
----
Y
G
Q
---
T
-----
M
D
----
K
V
---
E
--
F
V
H
M
L
-------------
N
A
--------
T
M
C
A
T
T
R
T
I
-
C
A
I
L
E
-------
N
Y
QT
E
K
G
I
T
V
-
P
E
K
L
K
E
F
M
P
P
------------------------------------------------------------------------------------------------------
35
Fugue
62.20
14%
-28
* C4 *
1TFJ
3
GLTP_BOVIN
A:
[16-219]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
H
L
L
R
P
L
--
P
A
D
K
Q
I
E
T
G
P
F
L
E
A
V
S
-
H
-
L
--
P
P
F
F
D
C
L
G
S
-----------------------
P
V
----------
F
-------
T
--
P
------
I
K
A
D
I
S
G
N
I
---------------
T
K
I
K
A
V
Y
D
T
N
P
T
K
F
---
R
--------
T
L
Q
N
I
L
E
-
V
-----------
E
--
K
E
----------
M
Y
---
G
A
E
W
P
K
-
V
G
A
T
L
A
L
M
W
L
K
R
G
-----
L
R
F
I
Q
---------------
V
-
F
----
L
Q
S
---
I
C
D
G
-
E
R
D
----
E
N
---
H
PN
L
I
R
V
N
A
T
-----------
K
A
--------
Y
E
M
A
L
K
K
Y
H
G
W
I
V
Q
K
-------
I
F
--
Q
A
A
L
Y
A
-
A
P
Y
K
S
D
F
L
K
A
L
-
S
K
GQ--
N
V
-----
T
E
E
--
E
C
L
-
E
K
V
R
L
F
----
L
V
N
-
Y
T
A
T
I
D
------
V
I
Y
------
E
M
Y
T
R
-
M
---
N
A
E
L
N
Y
KV-------------------------
28
Fugue
61.84
11%
-54
- C1 -
1SGM
-
YXAF_BACSU
A:
[5-188]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
D
S
R
E
K
I
L
--
H
T
A
S
R
L
S
Q
L
Q
G
Y
H
A
T
G
--------------------------------------------------
L
-------
N
--
Q
------
I
V
K
E
S
G
A
P
K
---------------
G
S
L
---
Y
H
F
F
P
N
G
K
---
E
--------
E
L
A
I
E
A
V
-
T
-----------
Y
T
G
K
I
----------
V
E
---
H
L
I
Q
Q
S
-
M
D
E
S
S
--
D
P
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E
A
I
-----
Q
L
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I
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---------------
K
-
T
----
A
S
Q
---
F
D
N
T
-
E
S
I
----
K
G
---
I
--
P
V
G
L
L
A
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E
T
A
LIS
E
P
--
L
R
T
V
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M
K
V
F
-
K
S
W
E
A
-------
V
F
--
A
R
K
L
M
E
-
N
G
F
A
E
E
E
A
N
Q
L
-
G
T
----
L
I
-----
N
S
M
--
I
E
G
-
G
I
M
L
S
L
----
T
N
K
D
K
T
P
L
L
L
------
I
A
E
------
Q
I
P
V
L
-
V
---
R
--------------------------------
1
PsiBlast_PDB
59.35
28%
-44
- C2 -
4L87
3
SYSC_HUMAN
A:
[347-461]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
E
F
----------
Y
-------
Q
--
S
L
G
I
P
Y
H
I
V
N
I
V
S
G
S
L
---------------
N
-------------------------
H
A
A
S
K
K
L
-
D
-----------
L
--
E
A
----------
W
F
PGS
G
A
F
R
E
L
-
V
S
C
S
N
C
T
---
D
Y
Q
-----
A
R
R
L
R
---------------
I
-
R
----
Y
G
Q
---
T
K
K
M
--
M
D
----
K
V
---
E
--
F
V
H
M
L
-------------
N
A
--------
T
M
C
A
T
T
R
T
I
-
C
A
I
L
E
-------
N
Y
QT
E
K
G
I
T
V
-
P
E
K
L
K
E
F
M
P
P
------------------------------------------------------------------------------------------------------
29
Fugue
58.37
12%
-15
- C1 -
3MF2
4
AACL1_BRADU
A:
[37-335]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ADPLDHLADKLFHSMGSDG
V
Y
A
R
T
A
L
Y
E
S
I
V
E
R
L
A
A
L
I
T
S
H
RE
A
G
T
E
A
L
R
F
P
PV
M
S
R
A
Q
L
E
K
S
G
Y
L
K
S
F
P
N
L
-
L
--
G
C
V
C
G
L
H
G
T
E
R
E
I
N
A
--------------
A
V
S
R
F
D
A
GGDWTTS
L
S
-------
P
--
A
------
D
L
V
L
S
P
A
A
C
---------------
Y
P
V
---
Y
P
I
A
A
S
R
G
---
P
LPKG
G
L
R
F
D
V
A
A
D
C
F
-
R
-----------
R
--
E
P
SKHLDRLQ
S
F
R
M
---
R
E
Y
V
C
I
-
G
T
P
D
D
V
S
D
F
R
E
R
W
-----
M
V
R
A
Q
---------------
A
-
I
----
A
R
D
L
G
L
T
F
R
V
-
D
Y
A
----
S
D
---
P
--
F
F
G
R
V
G
Q
-----------
M
K
--------
A
V
S
Q
K
Q
Q
Q
L
-
K
F
E
L
L
I
P
L
RSEE
Q
P
--
T
A
C
M
S
F
-
N
Y
H
R
E
H
F
G
T
T
W
G
I
Q
----
D
A
-----
N
G
E
--
P
A
H
-
T
G
C
V
A
F
----
G
M
D
-
R
L
A
V
A
M
------
F
H
T
HGTDLS
A
W
P
A
K
-
V
---
R
D
I
L
G
L
QPH------------------------
23
HHSearch
57.66
20%
-45
* C3 *
3U0R
-
API5_HUMAN
A:
[23-163]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
H
K
D
A
----------
Y
-------
Q
--
V
------
I
L
D
G
V
K
G
G
----------------
T
K
E
---
K
R
L
A
A
Q
F
I
---
P
--------
K
F
F
K
H
F
P
E
L
-----------
A
--
D
S
----------
A
I
---
N
A
Q
L
D
L
-
C
E
D
E
----
D
V
S
I
R
-----
R
Q
A
I
K
E
LPQFATGEN
L
P
R
V
A
D
-
I
----
L
T
Q
---
L
L
Q
T
D
D
S
A
----
E
F
---
N
--
L
V
N
N
---------------
A
--------
L
L
S
I
F
K
M
D
A
-
K
G
T
L
G
-------
G
L
--
F
S
Q
I
L
Q
-
G
---------------------------------------------------------------------------------------------------------------
30
Fugue
56.81
14%
-31
- C1 -
1NG6
-
YQEY_BACSU
A:
[1-148]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
L
L
E
R
L
N
--
Q
D
M
K
L
Y
M
K
N
R
E
-
K
D
K
L
T
V
-
V
--
R
M
V
K
A
S
L
Q
N
E
A
I
K
L
K
--------------
K
D
S
L
T
----------
E
-------
D
--
E
------
E
L
T
V
L
S
R
E
L
---------------
K
Q
R
---
K
D
S
L
Q
E
F
S
---
N
--------
A
N
R
L
D
L
V
-
D
-----------
K
--
V
Q
----------
K
E
---
L
D
I
L
E
V
-
Y
L
P
E
Q
L
S
--
E
E
E
L
-----
R
T
I
V
N
---------------
E
-
T
----
I
A
E
---
V
----------------------------------------------------------
G
A
S
S
-------
K
A
--
D
M
G
K
V
M
-
G
A
I
M
P
K
V
--------------------------------------
K
G
-
K
A
D
G
S
L
------
I
N
K
------
L
V
S
S
Q
-
L
---
S
--------------------------------
34
Fugue
48.82
26%
-74
* C1 *
3FT7
1
?
A:
[7-51]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
---
N
--------
G
I
K
L
G
V
Y
-
I
-----------
P
--
Q
E
----------
W
H
---
D
R
L
M
E
I
-
A
K
E
K
N
L
T
-
L
S
D
V
C
-----
R
L
A
I
K
---------------
E
-
Y
----
L
D
N
---
H
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
48.75
23%
-49
- C2 -
2OXL
1
ARIR_ECOLI
A:
[23-61]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
V
-
N
-----------
N
--
K
N
----------
I
I
---
L
S
L
I
H
S
-
L
E
T
T
S
D
I
L
K
A
D
V
I
-----
R
K
T
L
E
---------------
I
-
V
----
L
R
Y
---
T
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
41.58
32%
-36
- C2 -
3ZVK
-
VAPC2_RICFE
A:
[25-86]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
L
-
L
A
K
N
N
T
I
A
I
S
S
I
V
-----
L
A
E
L
Q
---------------
Y
-
G
----
V
S
K
---
S
K
K
K
-
E
Q
N
----
Q
S
K
L
D
I
--
F
L
S
R
L
-------------
E
I
--------
I
D
F
S
A
K
C
T
F
Y
Y
G
E
L
R
-------
T
--------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
40.10
27%
40
- C2 -
2G3H
1
?
A:
[70-127]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
--
E
S
I
Q
V
L
G
Q
D
G
D
L
E
K
-----
L
--
D
E
I
W
T
K
I
A
V
S
H
I
P
R
T
--------------
V
S
K
E
S
----------
Y
-------
N
--
Q
------
L
K
G
V
I
L
D
V
L
---------------
T
A
A
---
S
S
L
D
E
S
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
39.74
27%
23
- C2 -
1UDO
-
RNPH_AQUAE
A:
[178-231]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
D
--------------
S
A
A
Q
V
----------
D
-------
M
--
N
------
V
V
G
T
G
S
G
R
L
---------------
S
E
V
---
H
T
M
G
E
E
Y
S
F
T
K
D
--------
E
L
I
K
M
L
D
-
L
-----------
A
--
Q
K
----------
G
I
---
N
E
L
I
E
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
38.41
34%
20
- C2 -
3E1R
1
CEP55_HUMAN
A:
[11-51]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
I
Q
L
-
K
D
A
L
E
-------
K
N
--
Q
Q
W
L
V
Y
-
D
Q
Q
R
E
V
Y
V
K
G
L
-
L
A
----
K
I
-----
F
E
L
--
E
K
K
-
T
E
----------------------------------------------------------------------------
5
PsiBlast_PDB
36.85
31%
-57
- C2 -
3CRL
2
PDK2_RAT
A:
[240-284]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
V
P
S
H
L
Y
-----------
H
M
--------
L
F
E
L
F
K
N
A
M
-
R
A
T
V
E
-------
S
H
--
E
S
S
L
T
L
-
P
P
I
K
------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
36.60
34%
34
- C2 -
3WUU
-
?
A:
[16-55]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
I
Q
L
-
K
D
A
L
E
-------
K
N
--
Q
Q
W
L
V
Y
-
D
Q
Q
R
E
V
Y
V
K
G
L
-
L
A
----
K
I
-----
F
E
L
--
E
K
K
-
T
-----------------------------------------------------------------------------
8
PsiBlast_PDB
36.53
34%
28
- C2 -
3WUT
1
?
A:
[16-57]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
I
Q
L
-
K
D
A
L
E
-------
K
N
--
Q
Q
W
L
V
Y
-
D
Q
Q
R
E
V
Y
V
K
G
L
-
L
A
----
K
I
-----
F
E
L
--
E
K
K
-
T
E
T
---------------------------------------------------------------------------
13
PsiBlast_PDB
36.38
27%
24
- C2 -
1UDQ
-
RNPH_AQUAE
A:
[178-231]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
D
--------------
S
A
A
Q
V
----------
D
-------
M
--
N
------
V
V
G
T
G
S
G
R
L
---------------
S
E
V
---
H
T
M
G
E
E
Y
S
F
T
K
D
--------
E
L
I
K
M
L
D
-
L
-----------
A
--
Q
K
----------
G
I
---
N
E
L
I
E
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------