@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0320: (2016-03-14 )
MNKYFKNLATILFTVSVLTTSIIASPAMASAYEESHNVSTIYTSPLDTPHVGDTKITGKTTPLSSFSIAIYTSEGRLTGTFFGTTNTDGTYSVDLSDFTVYHPSGYVTTGKVIYEENSFVRSGTETGGDKVIKVTVSYDYIQTAINELFLNNNPTGTILTITDQNAINAVQEQINTVTSSEKESFQEQLNNAQQQLDARIAQEQAAIQAVNQLFLEDSPVNSIKAETTQDLIDQAQTLVDVLPASELKDTLQANIVKAQTELDERSKPVTPPKNDPEPDNPEEPVTPVDPATPIPDEPSTPTDPATPEKPEITTPENPESTVVEADSSENEPEKSADSKIVNNPIQITSQATKTATKQAKSSATKTTLPLPKAGDTETTSSILFGTLMLSSLVLFKRKK
Atome Classification :
(20 SA)
.........10........20........30........40........50........60...---.....70........80........90........100---.......110.------------------......120.......130.......------140...---------------....150--.......160.......170.......180.......190.......200.......210.....--...220.......230.......240.......250-----........260...---------....270.......280.......290.......300.......310....--....320.......330.......340.......350.......360.......370.......380.......390.......
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
M
N
K
Y
F
K
N
L
A
T
I
L
F
T
V
S
V
L
T
T
S
I
IAS
P
A
M
A
S
A
Y
EESHN
V
S
T
I
Y
TSPLDTPHVGDTKITGKTTPL
S
---
S
F
S
I
A
I
Y
TSEG
R
L
T
G
T
F
F
GTTNTD
G
T
Y
S
V
DLS
D
F
T
V
YH---PSG
Y
V
T
T
G
K
V
I
------------------
Y
EEN
S
F
VRSGTETGG
D
K
V
I
K
V
T
V
S
Y
D
------
Y
I
Q
T
A
I
---------------
N
E
L
FLNN--NPT
G
T
I
L
T
ITDQ
N
A
I
N
A
V
Q
E
Q
I
N
T
VT
S
S
E
K
E
S
F
Q
E
Q
L
N
N
A
Q
Q
Q
L
D
A
R
I
A
Q
E
Q
A
A
I
Q
A
V
N
-
Q
L
FLE--DSPVNSIK
A
E
T
T
Q
D
L
I
D
Q
A
Q
T
L
V
D
VL
P
A
S
E
L
K
D
T
L
------
Q
A
N
I
V
K
A
Q
TELDER---------SKPVTPPKNDPEPDNPEEPVTPVDPATPIPDEPSTPTDPATPEKPE-ITTP--ENPES
T
V
V
EADSSENEPEKSADSKIVNN
P
I
Q
I
T
S
Q
A
T
K
T
A
T
K
Q
AKSSATKTTLPLPKAGDTE
T
T
S
S
I
L
F
G
T
L
M
L
S
S
L
V
L
FKRKK
2
PsiBlast_PDB
75.89
23%
-3
- C4 -
3P0J
-
?
A:
[408-564]
---------------------------------------------------------------------------------------------------
D
F
I
A
A
H
---
P
E
G
T
V
T
---
L
V
------------------
L
P
D
W
S
A
V
A
S
D
E
I
T
G
V
E
K
D
I
S
A
A
L
Q
---------
V
N
C
A
L
L
K
A
Y
GLPSS
V
K
I
V
T
E
N
E
V
I
L
G
N
C
D
D
F
W
V
S
V
I
G
I
A
R
K
N
L
L
S
H
V
E
E
L
-----------
Y
G
G
E
V
R
N
A
G
Q
V
I
A
A
L
M
R
V
A
T
A
L
M
L
S
V
S
-
H
V
I
S
T
SL
D
G
H
I
N
A
F
A
R
E
Y
T
K
E
R
I
D
C
V
Q
T
L
E
G
R
I
P
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
75.61
24%
27
- C4 -
3P0I
-
?
A:
[408-566]
---------------------------------------------------------------------------------------------------
D
F
I
A
A
H
---
P
E
G
T
V
T
---
L
V
------------------
L
P
D
W
S
A
V
A
S
D
E
I
T
G
V
E
K
D
I
S
A
A
L
Q
V
N
C
A
L
L
K
A
Y
G
L
P
S
S
---------------
V
K
I
V
T
E
N
--
E
---
V
I
L
G
N
C
D
D
F
W
V
S
V
I
G
I
A
R
K
N
L
L
S
H
V
E
E
L
Y
G
G
E
V
R
N
A
G
Q
V
I
A
A
L
M
R
V
A
T
A
L
M
L
S
V
S
-
H
V
I
S
T
SL
D
G
H
I
N
A
F
A
R
E
Y
T
K
E
R
I
D
C
V
Q
T
L
E
G
R
I
P
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
75.54
24%
27
- C4 -
3P0H
-
?
A:
[408-563]
---------------------------------------------------------------------------------------------------
D
F
I
A
A
H
---
P
E
G
T
V
T
---
L
V
------------------
L
P
D
W
S
A
V
A
S
D
E
I
T
G
V
E
K
D
I
S
A
A
L
Q
V
N
C
A
L
L
K
A
Y
G
L
P
S
S
---------------
V
K
I
V
T
E
N
--
E
---
V
I
L
G
N
C
D
D
F
W
V
S
V
I
G
I
A
R
K
N
L
L
S
H
V
E
E
L
Y
G
G
E
V
R
N
A
G
Q
V
I
A
A
L
M
R
V
A
T
A
L
M
L
S
V
S
-
H
V
I
S
T
SL
D
G
H
I
N
A
F
A
R
E
Y
T
K
E
R
I
D
C
V
Q
T
L
E
G
R
I
P
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
68.58
24%
29
- C4 -
1TQQ
1
TOLC_ECOLI
A:
[314-428]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
Q
L
E
S
A
H
R
S
V
V
Q
T
V
R
S
S
F
N
N
I
N
A
S
I
S
S
I
N
A
Y
K
Q
A
V
V
S
A
Q
S
-
S
L
D
A
M
--
E
A
G
Y
-
S
V
G
T
R
T
I
V
D
V
L
D
A
T
T
T
L
Y
N
A
--
K
Q
E
L
A
N
A
R
Y
N
Y
L
I
N
Q
L
N
I
K
S
A
L
G
T
L
N
E
Q
D
L
L
A
L
N
N
A
L
S
K
P
V
S
T
N
P
E
--------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
67.51
19%
11
- C3 -
5C1C
3
?
A:
[42-162]
--------------------------------------
S
G
T
Y
E
E
Q
L
T
I
D
Y
A
G
D
L
T
L
Y
G
E
T
T
D
T
S
---
T
Y
K
D
N
V
V
T
I
T
H
T
I
S
S
P
D
A
G
S
L
D
K
S
A
T
V
N
V
V
S
D
G
F
S
M
Y
N
I
N
V
E
N
G
Y
G
E
G
A
Q
A
V
A
L
V
G
N
A
DQ
L
G
F
Y
G
C
Q
F
S
G
Y
Q
D
T
L
Y
V
K
A
G
T
Q
Y
Y
S
N
C
M
I
E
G
A
V
D
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
66.81
25%
19
- C2 -
1JHN
-
CALX_CANFA
A:
[200-311]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
P
D
N
S
F
E
I
L
V
D
Q
S
I
V
N
S
G
N
-------
P
V
N
P
S
R
E
I
------
E
D
P
E
D
Q
K
P
E
D
W
D
E
R
-----------
P
K
I
P
D
P
D
A
V
K
P
D
D
W
N
E
-----
D
A
P
A
K
I
P
D
E
E
A
T
K
P
D
G
W
L
D
D
E
P
E
Y
V
P
D
P
DA
E
K
P
E
D
W
D
E
D
M
D
G
E
W
E
A
P
Q
------------------------------------------------------------------
5
PsiBlast_PDB
60.86
28%
78
- C4 -
4CGK
-
?
A:
[42-104]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
N
L
T
A
Q
Q
Q
E
A
-
Q
K
Q
V
D
Q
I
Q
E
Q
V
S
A
-
I
Q
A
E
Q
S
N
L
Q
A
E
N
D
R
L
Q
A
E
--
S
K
K
L
E
G
E
I
T
E
L
S
K
N
I
V
S
R
N
Q
S
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
59.83
10%
-4
- C4 -
4K12
-
?
B:
[3-84]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
S
E
R
D
K
A
R
K
E
V
E
E
Y
V
K
K
I
V
G
E
S
Y
A
K
S
--------
T
K
K
R
H
T
I
T
V
A
L
V
N
E
L
N
N
I
K
N
E
Y
L
N
K
I
V
E
S
T
S
E
S
E
L
------
Q
I
L
M
M
E
S
R
S
K
V
D
E
A
---------
V
S
K
F
E
K
-----------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
59.79
31%
32
- C4 -
1YSM
-
CYBP_MOUSE
A:
[6-55]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
L
Q
K
D
L
E
E
V
K
V
L
L
E
K
S
T
R
K
R
L
R
D
T
L
------
T
S
E
K
S
K
I
E
T
E
L
K
N
K
---------
M
Q
Q
K
S
Q
K
K
--
P
E
-----------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
58.26
33%
23
- C4 -
4XX6
6
?
A:
[67-125]
-----------------------------------------------------------------------------------------------------------------------------------------------------
T
G
G
D
I
V
A
A
F
S
A
A
N
D
------
Y
V
L
R
G
H
---------------
N
-
L
V
W
Y
Q
--
E
L
A
P
W
V
E
T
L
T
G
E
D
L
W
N
A
T
V
N
H
I
T
T
V
M
T
H
Y
K
E
S
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
57.28
32%
43
* C5 *
1ZIW
-
TLR3_HUMAN
A:
[544-617]
----------------------------------------------------------------------------------------------------------------------------------------------------
E
S
N
G
F
D
E
I
P
V
E
V
F
K
D
------
L
F
E
L
K
I
---------------
I
D
L
G
L
N
N
--
L
N
T
L
P
A
S
V
F
N
N
Q
V
S
L
K
S
L
N
L
Q
K
N
L
I
T
S
V
E
K
K
V
F
G
P
A
F
R
N
L
-
T
E
L
D
M
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
56.16
32%
52
- C5 -
3ULU
-
TLR3_HUMAN
A:
[554-627]
----------------------------------------------------------------------------------------------------------------------------------------------------
E
S
N
G
F
D
E
I
P
V
E
V
F
K
D
------
L
F
E
L
K
I
---------------
I
D
L
G
L
N
N
--
L
N
T
L
P
A
S
V
F
N
N
Q
V
S
L
K
S
L
N
L
Q
K
N
L
I
T
S
V
E
K
K
V
F
G
P
A
F
R
N
L
-
T
E
L
D
M
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
56.07
32%
46
- C5 -
2A0Z
2
TLR3_HUMAN
A:
[549-622]
----------------------------------------------------------------------------------------------------------------------------------------------------
E
S
N
G
F
D
E
I
P
V
E
V
F
K
D
------
L
F
E
L
K
I
---------------
I
D
L
G
L
N
N
--
L
N
T
L
P
A
S
V
F
N
N
Q
V
S
L
K
S
L
N
L
Q
K
N
L
I
T
S
V
E
K
K
V
F
G
P
A
F
R
N
L
-
T
E
L
D
M
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
55.83
21%
104
- C4 -
4C7N
1
A:
[2-48]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
S
V
D
Y
I
R
K
L
Q
R
E
Q
Q
R
A
K
E
L
E
N
R
Q
K
K
L
E
H
A
N
R
H
L
L
L
R
I
Q
E
L
E
M
Q
A
R
A
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
55.40
32%
55
- C5 -
3ULV
-
TLR3_HUMAN
A:
[554-627]
----------------------------------------------------------------------------------------------------------------------------------------------------
E
S
N
G
F
D
E
I
P
V
E
V
F
K
D
------
L
F
E
L
K
I
---------------
I
D
L
G
L
N
N
--
L
N
T
L
P
A
S
V
F
N
N
Q
V
S
L
K
S
L
N
L
Q
K
N
L
I
T
S
V
E
K
K
V
F
G
P
A
F
R
N
L
-
T
E
L
D
M
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
52.46
16%
72
- C4 -
1JTH
-
SNP25_RAT
A:
[11-72]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
E
M
Q
R
R
A
D
Q
L
A
D
E
S
L
E
S
T
R
R
M
L
Q
L
V
E
E
S
K
D
A
G
I
R
T
L
V
M
L
D
E
Q
G
E
-
Q
L
E
R
I
--
E
E
G
M
D
Q
I
N
K
D
M
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
52.42
25%
97
- C4 -
2BEQ
-
SPIKE_CVHSA
A:
[914-949]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
Q
I
Q
E
S
L
T
T
T
S
T
A
L
G
K
L
Q
D
V
V
N
Q
N
A
Q
A
L
N
-
T
L
V
K
Q
--
L
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
51.25
17%
96
- C4 -
3A2A
1
HVCN1_HUMAN
A:
[11-51]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
Q
L
L
R
L
K
Q
M
N
V
Q
L
A
A
K
I
Q
H
L
E
F
S
C
S
E
K
E
Q
E
I
E
R
L
N
-
K
L
L
R
Q
--
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
50.15
29%
-4
- C3 -
3WAJ
-
?
A:
[781-825]
------------------------------------------------------
V
V
T
G
K
V
S
A
N
V
T
E
V
S
V
N
A
T
I
K
T
N
Q
N
R
T
F
E
Y
W
Q
T
V
E
V
K
N
G
T
Y
T
V
V
L
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
49.85
18%
1
* C3 *
2YN5
-
?
A:
[12-55]
-----------------------------------------------
D
I
V
N
D
L
I
I
M
Q
G
T
A
E
A
K
-----
S
Q
L
I
I
T
D
S
E
G
N
T
---
Y
T
L
T
V
P
D
N
G
K
W
S
M
A
I
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------