@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0334: (2016-03-14 )
MNKIIIYSSQYGTSKQYATELSQKKAIPMYSVESIPESIVEADEIIYVGSIYMGKVLGFDKFSKKYKTLSSKLIVISAGMYDPTRKENTDNIELTVKENLQKTNFLLKDIFCLKGKLDTQQLRLKHKILVNALYKSAKRKKESDLNDNERDIVRAYEDDSQIDLNKLDGVLDRL
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------.........10---........20.....------.---..30....------------------------------.-------------------------.----.--.40........50.-.-..-.--..---------.-----60.....-----.---------.-----.70-.......-.80..-......90--------------..-----.......100.......110..-.....120.......130.......140..----.....150.......160...---------------------....170..-----------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------M
N
K
I
I
I
YSSQY---GT
S
K
Q
Y
A
T
E
L
SQKKA------I---P
M
Y
S
V
E
S
I
------------------------------
P
-------------------------
E
----
S
--
I
VEAD
E
I
I
Y
V
G
S
I
Y
-
M
-
G
K
-V--L
G
---------
F
-----
D
K
F
S
K
K
Y
-----
K
---------T-----LS
S
-
K
L
I
V
I
SA-GMYDP-TRKENTD---------------
N
I
-----
E
L
T
V
K
EN
L
Q
K
T
N
F
L
L
K
D
I
F
C
LK-GKL
D
T
Q
Q
L
R
L
K
H
K
I
L
V
N
A
L
Y
K
S
A
KRKKESD----LND
N
E
R
D
I
V
R
AYEDDSQI
D
L
N
---------------------
K
L
D
G
V
LDRL-----------------------------------------------------------------------------------
28
Fugue
69.69
17%
-59
- C3 -
1OTC
1
TEBB_STENO
B:
[10-222]
----------------------------------------------------------------------------------------------------------QQS
A
F
K
Q
L
Y
T
E
L
F
N
N
---
E
G
D
F
S
K
V
S
S
-
N
L
K
K
P
------
L
---
K
C
Y
V
K
E
S
Y
------------------------------
P
-------------------------
H
----
F
--
L
V
T
-
D
G
Y
F
F
V
A
P
Y
F
-
T
-
K
E
-
A
-------------
V
-----
N
E
F
H
A
K
F
PNVNI
V
---------
D
-----
L
T
D
-
K
V
I
V
I
N
N
-
W
S
L
E
L
-
R
R
V
N
S
A
E
VFTSYANLEA
R
L
I
V
H
S
F
-----
K
P
N
L
Q
E
R
L
N
P
T
R
Y
P
V
N
--
L
F
R
D
-
D
E
F
K
T
T
I
Q
H
F
R
H
T
A
L
Q
A
A
I
N
K
T
V
K
G
D
N
L
V
D
----
I
S
K
V
A
D
A
A
G
K
K
G
K
V
D
A
G
I
V
K
A
SASKGDEFSDFSFK
E
G
N
T
A
T
L
K
I
A
D
I
F
V
Q
E
-----------------------------------------------------------------------------------
4
HHSearch
68.71
11%
-100
- C4 -
3KLB
14
?
A:
[5-150]
--------------------------------------------------------------------------------------------------------------
R
K
I
L
V
A
Y
F
S
C
S
---
G
V
T
K
A
V
A
E
K
L
A
A
I
T
G
------
A
---
D
L
Y
E
I
K
P
E
V
P
Y
T
EADLDWNDKKS
R
S
S
V
E
M
R
DAL
S
R
P
A
I
S
G
T-----------------------
L
----
F
H-
P
E
K
Y
E
V
L
F
V
G
F
P
V
W
-
W
-
Y
I
-
A
--
P
T
---------
I
I
N
---
T
F
L
E
S
Y
----------------
D
-----
F
A
G
K
I
V
V
P
F
A
T
-
S
G
G
S
G
-
I
G
N
C
-------------------------
E
K
N
L
H
K
A
Y
P
--
D
I
V
W
K
D
G
K
L
L
N
-
G
Q
I
T
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
56.90
11%
-82
* C4 *
1SQS
1
?
A:
[2-157]
--------------------------------------------------------------------------------------------------------------
N
K
I
F
I
Y
A
G
V
R
N
HN-
S
K
T
L
E
Y
T
K
R
L
S
S
I
I
S
S
R
N
N
V
D
I
---
S
F
R
T
P
F
N
S
E
L
E
ISNSDSEELFKKGIDRQSNADD
G
----
G
V
I
-----------------------
K
----
K
E
-
L
L
E
S
D
I
I
I
I
S
S
P
V
Y
-
L
-
Q
N
-
V
--
S
V
---------
D
T
K
---
N
F
I
E
R
I
G
-----
G
---------
W
SHLFR
L
A
G
K
F
V
V
T
L
D
V
-
A
E
S
N
G
-
S
D
-
N
V
------------------------
S
E
Y
L
R
D
I
F
S
Y
M
G
G
Q
I
L
H
Q
V
S
I
T
-
N
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
55.29
19%
-17
- C5 -
4V1S
2
?
A:
[37-395]
PGVEIGNND
Y
Y
T
W
C
K
E
T
L
S
V
I
D
K
D
LKISGTHSYYENQDRSQVSFI
W
G
N
I
F
L
L
Y
T
Y
T
E
G
I
S
L
SKSEW
S
D
A
L
M
N
C
F
L
N
F
D
N
Y
WHPNYKG
I
A
G
Y
A
TLPTSAEKVPDRF
Y
D
E
N
G
W
T
A
I
G
L
C
D
A
Y
L
---
A
T
--
Q
N
N
S
Y
L
E
K
A
K
G
------
A
---
L
A
F
S
L
S
G
---------------------------------------------------------------------
E
D
N
V
L
G
G
G
I
Y
-
F
-
Q
E
-
T
-------------
F
-----
V
S
L
P
V
Q
K
-----
N
---------
T
-----
I
C
S
-
A
V
T
M
L
S
C
M
K
L
Y
E
I
-
T
Q
D
R
Q
Y
L
---------------
D
A
A
I
R
I
N
D
W
T
V
E
N
L
L
D
K
S
D
N
L
L
W
D
A
K
M
V
A
D
G
S
V
N
T
Q
K
W
S
Y
N
A
G
F
M
I
R
S
W
L
K
M
Y
Q
A
T
K
D
E
K
----
Y
L
S
Q
A
K
A
T
L
A
S
S
E
A
K
W
---
Y
N
---------------------
S
I
N
G
A
L
N
D
P
GYFA
F
S
I
I
D
S
W
F
D
M
Y
D
T
DKNT
V
W
L
T
K
A
F
H
A
I
N
F
I
H
N
KLRDGNGRYPEHWGTPTTSNLEKYD
L
R
F
S
T
V
A
A
Y
M
Y
M
R
A
A
N
Y
K
R
I
L
N
3
HHSearch
54.55
10%
-84
- C4 -
1OBO
2
FLAV_NOSSO
A:
[2-125]
--------------------------------------------------------------------------------------------------------------
K
K
I
G
L
F
Y
G
T
Q
T
---
G
K
T
E
S
V
A
E
I
I
R
D
E
F
G
NDV---
V
---
T
L
H
D
V
S
Q
A
------------------------------
E
-------------------------
V
----
T
D
-
L
N
D
Y
Q
Y
L
I
I
G
C
P
T
L
-
N
I
G
E
-
L
--
Q
S
---------
D
W
E
---
G
L
Y
S
E
L
D
-----
D
V--------
D
-----
F
N
G
K
L
V
A
Y
F
G
T
-
G
D
Q
I
G
-
Y
A
D
N
F
Q
D
----------------
A
-----
I
G
I
L
E
E
K
I
S
Q
R
G
G
K
T
V
G
Y
W
S
T
D
-
G
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
53.49
16%
-92
- C4 -
2ARK
1
FLAV_AQUAE
A:
[5-100]
--------------------------------------------------------------------------------------------------------------
G
K
V
L
V
I
Y
D
T
R
T
---
G
N
T
K
K
M
A
E
L
V
A
E
G
A
R
S
LEG
T
E
V
---
R
L
K
H
V
D
E
A
------------------------------
T
-------------------------
K
----
E
D
-
V
L
W
A
D
G
L
A
V
G
S
P
T
N
-
M
-
G
L
-
V
--
S
W
---------
K
M
K
---
R
F
F
D
D
V
L
-----
G
DLWG-----
E
-----
I
D
G
K
I
A
C
A
F
S
S
-
S
G
G
W
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
53.20
10%
-63
- C4 -
1AG9
7
FLAV_ECOLI
A:
[1-129]
--------------------------------------------------------------------------------------------------------------
A
I
T
G
I
F
F
G
S
D
T
---
G
N
T
E
N
I
A
K
M
I
Q
K
Q
L
G
KDV---
A
---
D
V
H
D
I
A
K
S
------------------------------
S
-------------------------
K
----
E
D
-
L
E
A
Y
D
I
L
L
L
G
I
P
T
W
Y
Y
-
G
E
-
A
--
Q
C
---------
D
W
D
---
D
F
F
P
T
L
E
-----
E
I--------
D
-----
F
N
G
K
L
V
A
L
F
G
C
-
G
D
Q
E
D
-
Y
A
E
Y
F
C
D
----------------
A
-----
L
G
T
I
R
D
I
I
E
P
R
G
A
T
I
V
G
H
W
P
T
A
-
G
Y
H
F
E
A
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
52.22
15%
-101
- C4 -
3HLY
-
?
A:
[2-94]
---------------------------------------------------------------------------------------------------------------
S
V
L
I
G
Y
L
S
D
Y
---
G
Y
S
D
R
L
S
Q
A
I
G
R
G
L
V
K
T
G
V
A
-
V
---
E
M
V
D
L
R
A
V
------------------------------
D
-------------------------
P
Q
E
L
I
E
A
-
V
S
S
A
R
G
I
V
L
G
T
P
P
S
---
Q
--
P
--
S
E
---------
A
V
A
---
T
A
L
S
T
I
F
-----
A
A
--------
A
-----
H
N
K
Q
A
I
G
L
F
D
S
-
Y
G
G
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
52.12
12%
-92
- C4 -
1YOB
4
FLAV_AZOVI
A:
[1-100]
--------------------------------------------------------------------------------------------------------------
A
K
I
G
L
F
F
G
S
N
T
---
G
K
T
R
K
V
A
K
S
I
K
K
R
F
D
DETM--
S
---
D
A
L
N
V
N
R
V
------------------------------
S
-------------------------
A
----
E
D
-
F
A
Q
Y
Q
F
L
I
L
G
T
P
T
L
-
G
E
G
E
-
L
--
P
G
LSSDAENE-
S
W
E
---
E
F
L
P
K
I
E
G----
L
---------
D
-----
F
S
G
K
T
V
A
L
F
G
L
-
G
D
Q
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
51.62
14%
-86
- C4 -
2ZKI
3
?
A:
[5-119]
--------------------------------------------------------------------------------------------------------------
P
N
I
L
V
L
F
Y
G
-
Y
---
G
S
I
V
E
L
A
K
E
I
G
K
G
A
E
E
A
G
A
E
-
V
---
K
I
R
R
V
R
E
T
LPPEFQSRIPFDKVKD
I
P
E
-----------
V
T
------------------------
L
----
D
D
-
M
R
W
A
D
G
F
A
I
G
S
P
T
R
-
Y
-
G
N
-
M
--
A
G
---------
G
L
K
---
T
F
L
D
T
T
A
I
L
W
K
D
N
---------
V
-----
L
Y
G
K
P
V
T
F
F
T
E
-
A
S
T
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
49.69
11%
-65
- C4 -
1CZN
1
FLAV_SYNE7
A:
[1-128]
--------------------------------------------------------------------------------------------------------------
A
K
I
G
L
F
Y
G
T
Q
T
---
G
V
T
Q
T
I
A
E
S
I
Q
Q
E
F
G
GESI--
V
---
D
L
N
D
I
A
N
A
------------------------------
D
-------------------------
A
----
S
D
-
L
N
A
Y
D
Y
L
I
I
G
C
P
T
W
-
N
-
V
G
E
L
--
Q
S
---------
D
W
E
---
G
I
Y
D
D
L
D
-----
S
V--------
N
-----
F
Q
G
K
K
V
A
Y
F
G
A
-
G
D
Q
V
G
Y
S
D
N
F
Q
D
-----------------
A
-----
M
G
I
L
E
E
K
I
S
S
L
G
S
Q
T
V
G
Y
W
P
I
E
-
G
Y
D
F
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
49.42
10%
-109
- C4 -
2FCR
1
FLAV_CHOCR
A:
[1-96]
---------------------------------------------------------------------------------------------------------------
K
I
G
I
F
F
S
T
S
T
---
G
N
T
T
E
V
A
D
F
I
G
K
T
L
G
------
A
KAD
A
P
I
D
V
D
D
V
T-----------------------------
D
-------------------------
P
----
Q
A-
L
K
D
Y
D
L
L
F
L
G
A
P
T
W
-
N
-
T
G
-
A
--
D
T
ERSGT----
S
W
D
---
E
F
L
Y
D
K
L
-----
P
EV-------
D
-----
M
K
D
L
P
V
A
I
F
G
L
-
G
D
A
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
49.30
15%
-94
- C4 -
2FZ5
1
FLAV_MEGEL
A:
[1-92]
---------------------------------------------------------------------------------------------------------------
M
V
E
I
V
Y
W
S
G
T
---
G
N
T
E
A
M
A
N
E
I
E
A
A
V
K
A
A
G
A
D
-
V
---
E
S
V
R
F
E
D
T
------------------------------
N
-------------------------
V
----
D
D
-
V
A
S
K
D
V
I
L
L
G
C
P
A
M
-
G
-
S
E
-
E
LE
D
S
---------
V
V
E
---
P
F
F
T
D
L
A
-----
P
---------
K
-----
L
K
G
K
K
V
G
L
F
G
S
-
Y
G
W
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
49.18
13%
-89
- C4 -
1YDG
1
NQOR_DEIRA
A:
[7-127]
--------------------------------------------------------------------------------------------------------------
V
K
L
A
I
V
F
Y
S
S
T
---
G
T
G
Y
A
M
A
Q
E
A
A
E
A
G
R
A
A
GAE-
V
---
R
L
L
K
V
R
E
T
------------------------------
A
P
Q
D
V
I
D
G
Q
D
A
W
K
A
N
I
E
A
M
K
D
V
P
E
A
T
P
----
A
D
-
L
E
W
A
E
A
I
V
F
S
S
P
T
R
-
F
-
G
G
-
A
--
T
S
---------
Q
M
R
---
A
F
I
D
T
L
G
-----
G
L
W
S
S
G----
K
-----
L
A
N
K
T
F
S
A
M
T
S
-
A
Q
N
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
49.11
11%
-60
- C4 -
2WC1
1
FLAV_RHOCB
A:
[2-152]
--------------------------------------------------------------------------------------------------------------
A
K
I
G
L
F
F
G
S
D
T
---
G
T
T
R
K
I
A
K
Q
I
K
D
M
F
D
DEVM--
A
---
K
P
L
N
V
N
R
A
------------------------------
D
-------------------------
V
----
A
D
-
F
M
A
Y
D
F
L
I
L
G
T
P
T
L
-
G
-
D
G
-
Q
--
L
P
GLSANAASE
S
WE---
E
F
L
P
R
I
A
D----
Q
---------
D
-----
F
S
G
K
T
I
A
L
F
G
L
-
G
D
Q
V
T
-
Y
P
L
E
F
V
N
----------------
A
-----
L
F
F
L
H
E
F
F
S
D
R
G
A
N
V
V
G
R
W
P
A
K
-
G
Y
G
F
E
D
S
L
A
V
V
E
G
E
F
L
G
L
A
L
----------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
47.60
13%
-100
- C4 -
2BMV
2
FLAV_HELPY
A:
[2-90]
--------------------------------------------------------------------------------------------------------------
G
K
I
G
I
F
F
G
T
D
S
---
G
N
A
E
A
I
A
E
K
I
S
K
A
I
G
N-----
A
---
E
V
V
D
V
A
K
A
------------------------------
S
-------------------------
K
----
E
Q
-
F
N
S
F
T
K
V
I
L
V
A
P
T
A
-
G
A
G
D
-
L
--
Q
T
---------
D
W
E
---
D
F
L
G
T
L
E
-----
A
S--------
D
-----
F
A
N
K
T
I
G
L
V
G
L
-
G
D
Q
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
46.93
14%
-83
- C4 -
1F4P
1
FLAV_DESVH
A:
[1-97]
--------------------------------------------------------------------------------------------------------------
P
K
A
L
I
V
Y
G
S
T
T
---
G
N
T
E
Y
T
A
E
T
I
A
R
E
L
A
D
A
GYE-
V
---
D
S
R
D
A
A
S
V
------------------------------
E
-------------------------
A
G---
G
L-
F
E
G
F
D
L
V
L
L
G
C
S
T
W
-
G
-
D
D
-
S
--
I
E
---------
L
QDDF
I
P
L
F
D
S
L
E
E----
T
---------
G
-----
A
Q
G
R
K
V
A
C
F
G
C
-
G
D
S
S
W
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
46.82
17%
-80
- C4 -
3F6R
1
FLAV_DESDE
A:
[2-98]
--------------------------------------------------------------------------------------------------------------
S
K
V
L
I
V
F
G
S
S
T
---
G
N
T
E
S
I
A
Q
K
L
E
E
L
I
A
A
G
G
H
E
-
V
---
T
L
L
N
A
A
D
A
------------------------------
S
-------------------------
A
----
E
NL
A
D
G
Y
D
A
V
L
F
G
C
S
A
W
-
G
-
M
E
-
D
--
L
E
---------
M
Q
D
---
D
F
L
S
L
F
E
E
FDR-
I
---------
G
-----
L
A
G
R
K
V
A
A
F
A
S
-
G
D
Q
E
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
44.84
10%
-14
- C4 -
1IVN
2
TESA_ECOLI
A:
[1-179]
--------------------------------------------------------------------------------------------------------------
A
D
T
L
L
I
L
G
D
S
L
---
S
A
G
Y
R
M
S
A
S
A
A
W
P
A
L
------
L
---
N
D
K
----------------------------------------------------------------------
W
S
K
T
S
V
V
N
A
S
I
S
G
-
D
-
T
S
-
Q
--
Q
G
---------
L
-----
A
R
L
P
A
L
L
-----
K
---------
Q
-----
H
Q
P
-
R
W
V
L
V
E
L
-
G
G
N
D
G
-
L
R
G
F
Q
P
Q
---------------
Q
T
-----
E
Q
T
L
R
Q
I
L
Q
D
V
K
A
A
N
A
E
P
L
L
M
Q
-
I
R
L
P
A
N
Y
G
R
R
Y
N
E
A
F
S
A
I
Y
P
K
L
A
K
E
F
D
V
P
L
L
P
FF
M
E
E
V
Y
L
K
P
Q
W
M
Q
D
D
G
I
H
P
N
R
D
---------------------
A
Q
P
F
I
A
D
W
M
A
K
Q
L
Q
PLVN--------------------------------------------------------------------------
16
HHSearch
43.84
12%
-90
- C4 -
3HA2
2
?
A:
[1-105]
--------------------------------------------------------------------------------------------------------------
M
Q
T
L
I
I
V
A
H
P
E
LAR
S
N
T
Q
P
F
F
K
A
A
I
E
N
F
S
N-----
V
---
T
W
H
P
L
V
A
D
------------------------------
F
N
V
E
Q
E
--------------------
Q
----
S
L
-
L
L
Q
N
D
R
I
I
L
E
F
P
L
Y
-
W
-
Y
S
-
A
--
P
A
---------
L
L
K
---
Q
W
M
D
T
V
M
-----
T
TKFATGHQY
A
-----
L
E
G
K
E
L
G
I
V
V
S
-
T
G
D
N
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------