@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0337: (2016-03-14 )
MSRIDIAELNDFLHGLRSSNAEAKAMIRKIKEAAMDYAQDNRLKGEAVSTSKQYFSSTYTSICQSIIEALDESEERLAQYIREFGSQVDSSPSARIDAEILQEAMAKVSQLQRKEEDLHRQLTAPNTKPDMQQVYAVKSRSVHTQLLKAIEQENILEKYLAFEQSHGQFFSALDELIRATARAVQELLHHVSFNDKTGTYSVPKSAANSLLLMKKARDKARKENDKDPYPKAFEDYTVLAYTYVNDQGETVTMWLLEKDGKRVENKELQDFLEKHGQELDPLLYTNLSGEELERKVNDSWKEGINYLNGQKVSGVSGATLRSSAYVASMKDWTDDAGLTDMALGLGFGIAAARNKPVIKEKLNPAETKQTVNGEKWNNYFKEKYGAGNVQWKPSSFEDIIINPERLYGSTKKEVRQMLGEGWKEETYGSAGNGWKFTNEGDGMVFYHPGEGIHKGSYYGFSSGDTGKVKIVGKDYIDFSKDKATIIKFGGE
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------.........10.....-.-..--------------20........30........40........50........60........70.--.......80......------...90--....-.....100.......110..--------.---....---120.......130.....--..140------........150..-.....160.......170....--------...180.--------......190.......200....----.....210.......220--........230.......240.......250.......260....----...270.-......280......--.290.......300....-.....310.......320--...------.-------------....330.-......340.......350---.......360.--.....----.370.......380----........-----.390.......400-------.......410.......420.......430.......440----........450.......460.......470--........480.........490-------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------MSR
I
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-R-SS--------------N
A
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QDNRLKGEAV
S
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LD
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------QVDS---SPSA-RI
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--------
E
---
E
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---
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LTAPNTK
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A
V--KSR
S
-------
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HVSFNDKTGTY--SV
P
K
----
S
AAN
S
L
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AR---KENDKDPYPKAFED
Y
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VNDQG
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EKDGKRV
E
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----
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-KHGQELDP
L
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YTNL
S
--
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--
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I
-NYLNGQKVSGVSG
A
T
L
R---S
S
A
------
Y
-------------
V
ASMKDWT-DDAG
L
T
D
M
A
L
G
L
G
FGIAAA---RNKP
V
I
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EKL
N
--
P
A
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TK----QTVN
G
E
K
W
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N
Y
F
------
K
E
KYGAGN-----
V
Q
WKPSSF
E
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-------
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LYG
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GEGWKEETYGSAGNG
W
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FTNEGD-----
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YHPGEGIHKGSYYGFSSGDT
G
K
V
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I
V
---GKDYIDFSK--D
K
A
T
I
I
K
FGGE--------------------------------------------------------------------------------------
25
Fugue
73.25
16%
-1
- C5 -
4WZR
1
K0020_HUMAN
A:
[9-524]
------------------------------------------------------N
Y
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-
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ATG
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--
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----
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P
G
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D
G
E
L
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------
A
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-
H
P
A
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H
-----
L
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M
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-------
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T
L
V
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H
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G
-----------------
M
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L
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-----
S
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A
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---
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E
--
S
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G
I
E
I
L
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E
K
L
--------------------------------------------------------------------------------------
10
PsiBlast_PDB
64.01
21%
-24
- C3 -
4Q25
-
PHOU_PSEAE
A:
[41-165]
---------------------------------------------------------------------------------------------------------------------------------------------------------------
V
N
A
L
I
D
--
A
D
S
G
L
A
Q
Q
-
V
R
E
I
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------
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N
---------
Q
M
E
R
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C
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A
--------
A
---
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---
L
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--
A
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K
--------
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-
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--------
L
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A
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F
--------
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A
D
L
A
L
S
V
A
Q
Y
D
K
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
58.96
26%
8
- C3 -
4CGK
-
?
A:
[49-163]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
E
A
Q
K
Q
V
D
Q
I
Q
E
Q
--------
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---
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--
K
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G
-------
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I
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I
--------
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--
N
S
K
S
--------
I
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A
I
S
R
V
A
------
A
M
--
S
E
I
V
----
S
A
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K
M
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Q
K
A
D
K
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A
I
---
S
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
56.29
11%
19
- C1 -
1MHY
2
MEMA_METTR
D:
[12-521]
-------------------------------------------------------------------------------------------
N
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-
A
-
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--------
A
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---
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R
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--
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N
YPGW
A
D
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Y
G
K
I
F
N
E
W
K
------
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Y
E
D
P
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SGFIP
Y
Q
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D
RVSQV--
P
F
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RYECH
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A
E
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T
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N
LW
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C
V
FPDPLAKF------------------------------------------------------------------------------
17
HHSearch
55.27
11%
-1
- C3 -
3ZBH
3
?
A:
[9-87]
--------------------------------------------------------------------------------
L
T
P
E
E
L
R
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R
Q
Y
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---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
55.18
13%
-21
- C3 -
3FX7
-
?
A:
[5-88]
-------------------------------------------------------------------------------
Q
M
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V
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E
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V
G
H
L
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F
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Y
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----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
54.26
13%
9
* C4 *
1Y10
5
Y1264_MYCTU
A:
[14-376]
--------------------------------------------------------------------------------------
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C
P
---------------------------------------
D
P
A
P
L
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L
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L
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E
V
V
D
T
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---
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F
P
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R
A
G
V
A
--
S
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M
A
V
----
S
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A
G
--------------------------------------------------
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A
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R
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V
R
R
-----------------------------------------------------------------------------------------
14
HHSearch
50.99
9%
-8
- C3 -
3GWK
1
?
C:
[7-87]
-------------------------------------------------------------------------------
K
L
T
P
E
E
L
R
S
S
A
Q
K
Y
-
T
-
A
G
--------------
S
Q
Q
V
T
E
V
L
N
L
L
T
Q
E
Q
A
V
I
--
D
E
N
W
D
G
S
T
F
D
S
F
E
A
Q
F
N
E
-
L
S
P
K
I
T
E
F
A
Q
L
L
E
D
--
I
N
Q
Q
L
L
K
V
-
A
D
I
I
E
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
49.59
10%
14
- C5 -
3CSK
3
DPP3_YEAST
A:
[2-711]
SHFFADHDA
P
L
S
M
LSVKTEYFPQLT
D
K
E
Q
K
Y
A
H
F
M
S
K
A
S
H
A
G
S
R
V
V
M
R
Q
V
SHE
S
E
P
I
F
D
L
I
L
A
I
H
S
K
L
N
GKYPEDD
I
T
Q
K
Q
Q
T
G
L
Y
L
E
Y
V
S
Q
F
-
L
-
S
N
LGNFKSFGD
T
K
F
I
P
R
C
E
V
K
F
F
K
Q
L
L
E
L
A
K
I
N
P
S
S
S
P
L
T
L
S
P
V
D
V
N
H
E
F
T
S
H
H
L
F
S
T
I
N
E
L
I
D
I
G
I
Y
H
--
V
E
E
K
A
A
L
L
G
F
P
S
Q
G
Y
------
T
S
A
Y
---
Y
L
G
L
-
P
V
T
P
E
D
M
A
L
L
K
E
Q
L
--
F
A
E
L
--------
A
---
I
L
P
E
---
N
T
R
I
N
K
V
G
E
N
S
F
Q
I
W
V
A
S
--
E
N
V
K
-------
N
Q
I
T
E
T
Y
P
S
G
Q
I
T
-
L
S
N
A
V
T
K
V
E
F
I
F
G
D
H
S
R
E
M
R
L
V
--------
A
S
Y
L
K
E
A
Q
K
F
AAN
D
T
Q
K
A
M
L
Q
E
Y
I
N
H
F
V
T
G
S
S
--
Q
A
H
K
----
E
A
Q
K
L
W
V
K
D
I
S
P
V
I
E
T
N
I
G
F
I
E
T
Y
R
E
P
S
G
I
I
---
G
E
F
E
S
L
V
A
I
Q
N
K
E
R
T
A
K
F
S
S
L
V
N
N
A
E
E
F
I
S
L
LPWS
K
D
Y
E
K
P
I
-
F
N
P
P
D
F
T
S
L
E
V
L
T
F
T
--
G
S
G
I
P
A
G
I
N
I
P
N
--
Y
D
D
V
-
R
L
K
I
G
F
K
N
V
S
L
G
N
I
L
S
A
---
A
A
K
------
S
SSKHPPSFISQED
R
P
I
F
E
K
Y
Q
-
S
D
S
F
E
V
Q
V
D
I
H
E
L
L
G
H
G
S
G
---
K
L
L
T
E
F
T
D
G
F
N
FD
K
E
N
P
P
----
L
G
L
D
G
K
P
V
S
T
Y
Y
K
VGET
W
G
S
K
F
G
Q
L
A
-----
G
P
F
E
E
C
R
A
E
V
I
A
M
F
L
L
TN
K
K
I
L
D
I
F
G
F
H
D
V
E
S
Q
D
K
V
I
Y
A
G
Y
L
Q
M
A
R
A
G
L
L
A
L
E
Y
W
N
P
K
T
G
-----
K
W
G
Q
P
H
M
Q
A
R
F
S
I
M
K
T
F
M
K
H
S
T
D
K
N
F
L
K
L
E
M
N
S
T
N
D
D
F
A
I
K
L
--
D
K
S
L
I
K
T
A
G
H
E
C
V
K
D
Y
L
K
H
L
H
V
Y
K
C
S
GD
V
E
Q
G
S
K
Y
F
I
D
R
S
TVT
P
D
L
A
S
L
R
D
I
V
L
S
K
RLPR
R
Q
F
I
Q
S
N
S
Y
I
D
DNN
K
V
T
L
K
E
Y
D
ET
P
Q
G
M
L
Q
S
F
L
D
R
E
L
15
HHSearch
49.35
12%
-5
- C3 -
2VS0
4
ESXA_STAAM
A:
[5-85]
-------------------------------------------------------------------------------
K
M
S
P
E
E
I
R
A
K
S
Q
S
Y
-
G
-
Q
G
--------------
S
D
Q
I
R
Q
I
L
S
D
L
T
R
A
Q
G
E
I
--
A
A
N
W
E
G
Q
A
F
S
R
F
E
E
Q
F
Q
Q
-
L
S
P
K
V
E
K
F
A
Q
L
L
E
E
--
I
K
Q
Q
L
N
S
T
-
A
D
A
V
Q
-------
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
48.62
15%
-7
- C3 -
3FAV
3
ESXB_MYCTU
A:
[12-85]
-------------------------------------------------------------------------------------
L
A
Q
E
A
G
N
F
-
E
-
R
I
--------------
S
G
D
L
K
T
Q
I
D
Q
V
E
S
T
A
G
S
L
Q
--
G
Q
W
R
G
A
A
G
T
A
A
Q
A
A
V
V
R
-
F
Q
E
A
A
N
K
Q
K
Q
E
L
D
E
--
I
S
T
N
I
R
Q
A
-
G
V
Q
Y
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
46.75
10%
-1
- C5 -
3GS3
-
SYMPK_DROME
A:
[22-270]
-----------------------------------------------------------------------------
K
T
A
T
A
R
A
K
V
V
D
W
C
N
E
L
-
V
I
A
S
--------------
P
S
T
K
C
E
L
L
A
K
V
Q
E
T
V
L
G
--
S
C
A
E
L
A
E
E
F
L
E
S
V
L
S
L
A
H
D
S
N
M
E
V
R
K
Q
V
V
A
F
V
E
Q
--
V
C
K
V
K
V
E
L
-
L
P
H
V
I
N
------
V
V
S
M
L
L
R
D
N
S
A
-
Q
V
I
K
R
V
I
Q
A
C
G
S
I
Y
K
N
G
L
Q
Y
L
C
S
LMEPG
D
---
S
A
E
Q
---
A
W
N
I
L
S
L
I
K
A
Q
I
L
D
M
I
D
N
--
E
N
D
G
-------
I
R
T
N
A
I
K
F
L
E
G
V
V
-
V
L
Q
S
F
A
D
E
D
S
L
K
R
D
G
D
F
S
L
A
D
V
PDHCTLFR
R
E
K
L
Q
E
E
--------
G
N
N
I
L
D
I
L
L
Q
F
H
G
T
T
H
I
S
S
V
N
L
I
----
A
C
T
S
S
L
C
T
I
A
K
M
R
P
I
F
M
---
G
A
V
V
E
A
F
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
45.98
29%
64
- C6 -
4BPZ
2
?
A:
[39-146]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
G
S
W
HN
N
E
L
Q
-
H
Y
T
N
R
S
E
N
S
F
V
S
D
G
T
L
K
---
I
R
A
I
K
E
K
Y
T
F
-------------
E
G
S
T
K
D
Y
T
---
S
A
R
L
N
S
K
F
A
F
T
Y
G
K
V
E
V
---
R
A
K
L
P
S
K
K
G
T
W
--
P
A
I
W
T
----
L
G
A
N
S
N
E
T
G
N
Y
F
------
G
E
Q
Y
--
G
N
-----
A
E
W
P
A
C
G
S
I
D
I
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
45.11
29%
64
* C6 *
4BQ1
2
?
A:
[39-146]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
G
S
W
HN
N
E
L
Q
-
H
Y
T
N
R
S
E
N
S
F
V
S
D
G
T
L
K
---
I
R
A
I
K
E
K
Y
T
F
-------------
E
G
S
T
K
D
Y
T
---
S
A
R
L
N
S
K
F
A
F
T
Y
G
K
V
E
V
---
R
A
K
L
P
S
K
K
G
T
W
--
P
A
I
W
T
----
L
G
A
N
S
N
E
T
G
N
Y
F
------
G
E
Q
Y
--
G
N
-----
A
E
W
P
A
C
G
E
I
D
I
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
44.92
6%
12
- C3 -
3FAV
4
ESXA_MYCTU
B:
[9-80]
------------------------------------------------------------------------------------
G
I
E
A
A
A
S
A
I
-
Q
-
G
N
--------------
V
T
S
I
H
S
L
L
D
E
G
K
Q
S
L
T
K
L
--
A
A
A
W
G
G
S
G
S
E
A
Y
Q
G
V
Q
Q
K
-
W
D
A
T
A
T
E
L
N
N
A
L
Q
N
--
L
A
R
T
I
S
E
A
-
G
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
44.53
29%
69
- C6 -
4BOW
2
?
A:
[39-146]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
G
S
W
HN
N
E
L
Q
-
H
Y
T
N
R
S
E
N
S
F
V
S
D
G
T
L
K
---
I
R
A
I
K
E
K
Y
T
F
-------------
E
G
S
T
K
D
Y
T
---
S
A
R
L
N
S
K
F
A
F
T
Y
G
K
V
E
V
---
R
A
K
L
P
S
K
K
G
T
W
--
P
A
I
W
T
----
L
G
A
N
S
N
E
T
G
N
Y
F
------
G
E
Q
Y
--
G
N
-----
A
E
W
P
A
C
G
S
I
D
I
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
43.17
22%
73
- C3 -
3B8P
-
WZZB_SALTY
A:
[122-227]
------------------------------------------------------------------------------------------------------------------------------------
E
Q
S
V
K
G
Q
A
L
P
L
S
V
S
Y
V
S
T
T
-----------
A
E
G
--
A
Q
R
R
L
A
E
Y
-
I
Q
Q
V
D
E
E
V
A
K
E
L
E
V
D
L
---
K
D
N
I
-
T
L
Q
T
K
T
L
Q
E
S
L
E
T
Q
E
V
V
A
Q
E
--------
Q
---
K
D
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
40.54
12%
-2
- C4 -
1K6K
-
CLPA_ECOLI
A:
[1-142]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
N
Q
E
L
E
L
S
L
N
M
--
A
F
A
R
-------
A
R
E
H
R
H
E
F
M
T
V
E
H
-
L
L
L
A
L
L
--
S
N
--
P
S
A
R
E
A
L
E
A
C
--------
S
V
D
L
V
A
L
--------
R
Q
E
L
E
A
F
I
E
Q
T
T
P
V
L
P
A
--
S
E
E
E
----
R
D
T
Q
P
T
L
S
F
Q
R
V
L
Q
R
A
V
---
F
H
V
Q
S
S
G
R
N
E
V
T
G
A
N
V
L
V
A
I
F
---
S
E
Q
E
S
Q
A
A
Y
L
L
R
K
H
E
--
V
S
R
L
----
D
V
V
N
F
I
S
-
H
G
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
39.78
30%
82
- C3 -
3WXO
1
KATG_SYNE7
A:
[445-511]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
--
G
L
S
I
S
E
L
V
S
T
A
W
--
D
S
A
R
-
T
Y
R
N
S
D
K
R
G
G
A
N
G
A
R
I
R
--------------------------
L
A
P
Q
K
D
W
E
G
N
E
P
D
R
L
A
K
V
L
A
V
L
E
G
I
A
A
A
---
T
G
A
S
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
39.20
30%
87
- C3 -
3WNU
1
KATG_SYNE7
A:
[455-521]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
--
G
L
S
I
S
E
L
V
S
T
A
W
--
D
S
A
R
-
T
Y
R
N
S
D
K
R
G
G
A
N
G
A
R
I
R
--------------------------
L
A
P
Q
K
D
W
E
G
N
E
P
D
R
L
A
K
V
L
A
V
L
E
G
I
A
A
A
---
T
G
A
S
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------