@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0340: (2016-03-14 )
MQPPKKEAEKMDERFEKIYTQGKLNIMEIWVDKETGVQYVYHFAGYAGGMSPLLDVDGKPLLADLSKLNGAE
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..-.-.....-----.10......-------..20-------------------...--.....-------30.....-------------...40---.........50....---....60.....-..-.70.------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQ-P-
P
K
K
E
A
-----
E
K
M
D
E
R
F
E
K
-------
I
Y
TQ-------------------GK
L
--
N
I
M
E
I
-------
W
VDKETG-------------
V
Q
Y
V
----
Y
H
FAGYAGGMSPLLD---VDG
K
P
L
L
A
D
L
S
-
K
L-NGAE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
69.86
28%
-33
- C2 -
4O5P
-
?
A:
[5-815]
NFGFHIAPTHPVAGRLTYD
S
K
K
L
S
E
N
I
L
K
Q
Q
S
D
E
R
V
F
S
R
A
QC
C
K
A
I
H
I
T
L
G
F
D
G
TNNN
D
K
A
D
G
SSVS
P
S
C
S
N
V
A
R
L
I
H
A
SIGSG
D
D
I
N
S
R
G
I
F
K
Y
Y
C
P
G
VGTVFPDIKEFTPSNMGLIG
A
E
G
G
E
N
R
I
N
W
G
L
V
Q
L
V
D
A
L
F
Y
T
L
LKSRLK
L
N
D
V
Q
G
L
V
E
E
M
STN
W
T
V
S
TLT
G
G
L
L
E
N
G
E
K
K
R
R
A
A
L
E
P
K
L
K
E
L
E
E
K
L
R
Q
R
Q
N
S
GQKPHI
L
A
M
R
L
Y
I
Y
G
F
S
R
G
A
A
E
A
R
A
F
A
N
W
L
Q
E
L
T
RVSDADG
R
V
E
Y
R
F
AG
L
P
I
S
IE
F
L
G
L
F
DTVAAVGLP
F
A
A
G
H
MDWADDTMR
L
P
D
E
A
LPEDCSFLK
R
C
V
H
L
V
S
CHEQRAS
F
P
L
D
S
IRRRDMNGRRTG
P
S
C
Y
R
K
W
T
V
E
Y
A
Y
P
G
VHSDVGGGYGVGNQGKAVGGSEFLLS
Q
I
A
L
Q
H
M
Y
A
E
A
F
E
A
GAPLQVPEW
R
V
M
V
-
P
K
I
E
A
E
F
SVS
E
E
L
A
T
R
F
N
A
-------
W
Q
A
Q
-------------------
A
K
A
--
G
P
L
E
E
-------
V
I
R
R
E
T
A
-------------
L
I
T
A
----
W
R
I
D
R
Y
A
G
G
L
R
N
---------
K
A
F
F
A
N
V
P
-
P
D
M
P
E
A
Q
Q
K
A
W
E
A
L
H
K
R
R
S
R
E
Y
A
A
A
Q
QLPPMS
A
A
E
Q
A
E
W
D
R
N
V
A
L
I
GGEDQLRDLRVEKQFDPPL
D
Q
R
Q
L
L
G
A
A
A
E
F
A
H
D
Y
K
GDWGVLDD
G
M
T
V
G
G
V
I
DLLLG
G
T
V
F
L
I
N
E
E
D
E
A
E
E
Y
S
Q
I
H
R
D
G
S
A
R
Y
H
Q
L
F
SAPDRVAPGQ
E
K
L
V
A
L
F
D
EQVHDSRAPFTDYFRYRLVHFDNESN
K
R
L
S
V
LATAGRVVGVGVMLA
S
V
G
L
S
V
K
R
R
DPRMLLGG
L
P
E
I
S
A
F
D
PLTG
I
A
L
P
M
V
G
G
A
A
L
D
N
L
R
AFTRE
P
G
D
K
V
E
Q
I
G
Q
LPPPPP
L
A
V
A
A
V
QS
P
A
L
Q
Q
V
L
L
A
Q
Q
T
V
19
Fugue
66.69
18%
-97
- C2 -
4YH8
2
?
A:
[15-194]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KVNC
S
F
Y
Y
K
IGACRHGERCS
R
K
H
V
K
P
NFSQTILCPNMYKNPIHEPNGK
K
F
-
T
-
Q
R
E
L
A
-----
E
Q
F
D
A
F
Y
E
D
-------
M
F
C
E
-------------------
F
S
K
Y
G
E
V
E
Q
L
-------
V
V
C
D
N
V
G
DHLVG
N
-------
V
Y
V
R
----
F
K
Y
E
E
S
A
Q
N
A
I
D
D
L
N
S
RW
Y
S
Q
R
P
V
Y
A
E
L
S
-
P
V
-
T
D
F
R
EACCRQHETSECQRGGLCNFMH
A
K
K
P
S
P
Q
L
L
R
D
L
V
L
A
Q
R
K
Y
L
A
L
N
A
A
EE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
61.04
24%
-17
- C2 -
4IMP
1
?
A:
[31-550]
--------------------------------------------------------------------------------------SD
P
A
A
G
W
F
W
Q
A
V
A
R
QD
L
K
S
V
S
D
A
L
DLDADAP
L
S
A
T
L
P
A
L
S
V
W
H
R
Q
E
R
E
R
V
L
A
D
G
W
R
Y
R
V
D
W
V
R
V
A
P
Q
P
VRR
T
R
E
T
W
L
L
V
V
P
PGGIE
E
A
L
V
E
R
L
T
D
A
L
N
T
R
G
I
S
T
L
R
L
D
V
P
P
AAT
S
G
E
L
A
T
E
L
R
A
A
A
D
G
DPVK
A
I
L
S
LTALDERPHPECKDVP
S
G
I
A
L
L
L
N
L
V
K
A
L
G
E
A
DLR
I
P
L
W
T
I
T
R
GAVKAGPADRLLR
P
M
Q
A
Q
A
W
G
L
G
R
V
A
A
L
E
HPERWG
G
L
I
D
L
P
DSLDGD
V
L
T
R
L
G
E
A
L
T
NGLAED
Q
L
A
I
R
QS
G
V
L
A
R
R
L
V
P
A
P
ANQPAGRK
W
R
P
R
G
S
A
L
I
T
GGLG
A
V
G
A
Q
V
A
R
W
L
A
E
I
GAE
R
I
V
L
T
S
RRG
N
Q
-
A
-
A
G
--
A
-----
A
E
L
E
A
E
L
R
A
-------
L
G
A
Q
-------------------
V
S
I
--
V
A
C
D
V
TD
R
A
E
M
S
A
L
L
A
E
F
D
-------------
V
T
A
V
----
F
H
A
A
G
V
-
G
R
L
L
P
L
A
E
---
T
D
Q
N
G
L
A
E
I
C
A
A
K
V
-
R
G
A
Q
V
L
D
E
L
C
DSTDLDAF
V
L
F
S
S
GAGVWGGGGQ
G
A
Y
G
A
A
N
A
F
L
D
T
L
A
E
Q
R
R
A
R
G
L
P
A
T
S
I
S
W
G
S
WAGGGMADG
A
A
G
E
H
L
R
R
R
G
I
R
P
M
P
A
A
S
A
I
L
A
L
Q
E
V
L
D
Q
DET
C
V
S
I
A
DVD
W
D
R
F
V
P
T
F
A
A
TRATRLFDEV
P
A
A
R
K
AM--------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
57.20
22%
-9
- C2 -
1EFN
2
NEF_HV1BR
B:
[18-150]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RPQV
P
L
R
-
P
M
T
Y
K
A
A
-----
V
D
L
S
H
F
L
K
E
K
GGLEGL
I
H
S
Q
-------------------
R
R
Q
--
D
I
L
D
L
-------
W
I
Y
H
T
Q
G
YFPDWQNYTPGP
G
V
R
Y
P
----
L
T
F
-
G
W
C
Y
K
L
V
P
V
R
E
---
V
L
E
W
R
F
D
S
R
L
A
-
F
H
-
H
V
A
R
E
L
H
PEYF-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
53.89
30%
-58
- C2 -
1K7I
1
PRTC_DICCH
A:
[222-260]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
F
--
S
I
M
S
F
-------
W
G
E
N
E
T
G
-------------
A
D
Y
N
----
G
H
Y
G
G
-----
A
P
M
I
D
---
D
-----
I
A
A
I
Q
-
R
L
-
Y
G
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
53.47
16%
-9
- C2 -
1IUJ
1
?
A:
[1-102]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
F
V
T
M
N
R
I
P
-
V
-
R
P
E
Y
A
-----
E
Q
F
E
E
A
F
R
Q
-------
R
A
R
L
VDRMPGFI
R
N
L
V
L
R
P
KNPG
D
P
Y
--
V
V
M
T
L
-------
W
E
S
E
E
A
F
-------------
R
A
W
T
E
S
P
A
F
K
E
G
H
A
R
S
G
T
L
P
K
E
A
---
F
L
G
P
N
R
L
E
A
F
E
-
V
V
-
L
D
S
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
53.13
30%
-51
- C2 -
1K7Q
-
PRTC_DICCH
A:
[222-260]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
F
--
S
I
M
S
Y
-------
W
G
E
N
E
T
G
-------------
A
D
Y
N
----
G
H
Y
G
G
-----
A
P
M
I
D
---
D
-----
I
A
A
I
Q
-
R
L
-
Y
G
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
52.84
30%
-52
- C2 -
1K7G
1
PRTC_DICCH
A:
[222-260]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
F
--
S
I
M
S
Y
-------
W
G
E
N
E
T
G
-------------
A
D
Y
N
----
G
H
Y
G
G
-----
A
P
M
I
D
---
D
-----
I
A
A
I
Q
-
R
L
-
Y
G
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
39.44
44%
-8
- C2 -
1OJL
-
ZRAR_SALTY
A:
[258-282]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
S
G
E
I
Q
P
L
V
D
---
V
E
K
E
V
I
L
A
A
L
E
-
K
T
-
G
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
37.33
50%
-13
* C3 *
3S8K
1
LSPI_CARPA
A:
[4-17]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
P
I
V
D
---
I
D
G
K
P
V
L
Y
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
36.75
31%
37
* C2 *
4NM3
-
B:
[5-23]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
-
E
-
P
Q
K
F
A
-----
E
E
L
I
H
R
L
E
A
-------
V
Q
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
36.39
26%
6
- C2 -
1P0L
1
RL1_HELPY
A:
[1-19]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
K
V
F
-----
K
R
L
E
K
L
F
S
K
-------
I
W
N
D
-------------------
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
34.93
29%
71
- C2 -
2LV6
-
B:
[1-26]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KR
R
W
-
K
-
K
N
F
I
A
-----
V
S
A
A
N
R
F
K
K
-------
I
S
S
S
-------------------
G
A
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
34.08
54%
35
- C3 -
3TC2
-
?
A:
[6-23]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
P
V
L
D
---
V
T
G
K
E
L
D
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
33.79
25%
7
- C3 -
1EYL
-
A:
[6-17]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
V
D
---
A
E
G
N
L
V
E
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
30.61
31%
37
- C3 -
1WBA
-
ALB1_PSOTE
A:
[3-15]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
P
V
Y
D
---
A
E
G
N
K
L
V
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
30.42
31%
47
- C3 -
2QN4
-
IAAS_ORYSJ
A:
[1-28]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
P
P
P
V
Y
D
---
T
E
G
H
E
L
S
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
29.84
21%
20
- C3 -
1R8N
-
DRTI_DELRE
A:
[4-17]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
V
Y
D
---
I
E
G
Y
P
V
F
L
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
28.88
46%
90
- C3 -
3BX1
-
D:
[4-16]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
P
V
H
D
---
T
D
G
H
E
L
R
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
24.66
38%
111
- C3 -
2DRE
-
?
A:
[5-23]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
P
V
K
D
---
T
N
G
N
P
L
K
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------