@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0361: (2016-03-14 )
VTEVSMSLTGHLKELRTRLLIILLSFFLAFFVGLFVSKPLILFLQKDDLPKEVILHVFKVTDAFQIYIEMAFVIGLVLVFPVILYQLWAFVKPGLHASEQRITLRYIPITFLLFLFGVVFSYLITFPFILKFMFQFAAELGVETTIGLATYFQFLLQIVLSFGVLFELPMVIMLLTRLSLITPNGMRHSRKYAYFCLLIIAAFIAPPEILSHLMITIPLIGLYEISIVVSGLTVRRMDKEMNNV
Atome Classification :
(13 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------........-.10........20........30........40........50--........60.......---.70........80.....--...90........100.......---110.......120.......130.....-..140........150.......160.--......170.......180.......190...-....200.......210.......220.......230.......240..----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V
T
E
V
S
M
S
L
-
T
G
H
L
K
E
L
R
T
R
L
L
I
I
L
L
S
F
F
L
A
F
F
V
G
L
F
VSK
P
L
I
L
F
L
QKDDL
P
K
--
E
V
I
L
H
V
F
KV
T
D
A
F
Q
I
Y
I
---
E
M
A
F
V
I
G
L
V
L
V
F
P
V
I
L
Y
Q
--
L
W
A
F
VKPGLHASE
Q
R
I
T
L
R
Y
I
P
I
---
T
F
L
L
F
L
F
G
V
V
F
S
Y
L
I
T
F
P
F
I
L
K
F
M
F
Q
F
A
-
A
EL-GVETTI
G
L
A
T
Y
F
Q
F
L
L
Q
I
V
L
S
F
G
--
V
L
F
E
L
P
M
V
I
M
L
L
T
R
L
S
LITPNGMRHS
R
K
Y
A
Y
F
-
C
L
L
I
I
A
A
FIA
P
P
E
I
L
S
H
L
M
I
T
I
P
L
I
G
L
Y
E
I
S
I
V
VSGL
T
V
R
R
M
D
K
E
MNNV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
96.39
34%
-192
- C6 -
4HTS
-
TATC_AQUAE
A:
[9-236]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
H
L
R
E
L
R
Y
R
L
I
I
S
I
I
A
F
L
I
G
S
G
I
A
F
Y
F
A
K
Y
V
F
E
I
L
A
A
P
I
L
K
S
YP
E
V
E
L
I
T
L
S
P
T
E
P
L
F
I
L
I
---
K
I
S
L
A
V
G
F
I
I
A
S
P
V
I
L
Y
Q
--
F
W
R
F
I
E
P
A
L
Y
S
H
E
K
R
---
A
F
I
P
L
L
L
G
S
I
L
L
F
M
L
G
A
L
F
A
Y
F
I
V
L
P
L
A
L
K
F
L
L
G
L
G
F
T
Q
L
-
L
A
T
P
Y
L
S
V
D
M
Y
I
S
F
V
L
K
L
V
V
A
F
G
--
I
A
F
E
M
P
I
V
L
Y
V
L
Q
K
A
G
V
I
T
P
E
Q
L
A
S
F
R
K
Y
F
I
V
-
I
A
F
V
I
G
A
I
I
A
-
P
D
V
S
T
Q
V
L
M
A
I
P
L
L
L
L
Y
E
I
S
I
F
L
G
K
L
A
T
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
95.56
33%
-196
- C6 -
4B4A
1
TATC_AQUAE
A:
[5-229]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
H
L
R
E
L
R
Y
R
L
I
I
S
I
I
A
F
L
I
G
S
G
I
A
F
Y
F
A
K
Y
V
F
E
I
L
K
E
P
I
L
K
S
YP
E
V
E
L
I
T
L
S
P
T
E
P
L
F
I
L
I
---
K
I
S
L
A
V
G
F
I
I
A
S
P
V
I
L
Y
Q
--
F
W
R
F
I
E
P
A
L
Y
S
H
E
K
R
---
A
F
I
P
L
L
L
G
S
I
L
L
F
M
L
G
A
L
F
A
Y
F
I
V
L
P
L
A
L
K
F
L
L
G
L
G
F
T
Q
L
-
L
A
T
P
Y
L
S
V
D
M
Y
I
S
F
V
L
K
L
V
V
A
F
G
--
I
A
F
E
M
P
I
V
L
Y
V
L
Q
K
A
G
V
I
T
P
E
Q
L
A
S
F
R
K
Y
F
I
V
-
I
A
F
V
I
G
A
I
I
A
-
P
D
V
S
T
Q
V
L
M
A
I
P
L
L
L
L
Y
E
I
S
I
F
L
G
K
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
93.84
33%
-201
- C6 -
4HTT
-
ENLYS_BPT4 (first)
A:
[7-231]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
H
L
R
E
L
R
Y
R
L
I
I
S
I
I
A
F
L
I
G
S
G
I
A
F
Y
F
A
K
Y
V
F
E
I
L
K
E
P
I
L
K
S
YP
E
V
E
L
I
T
L
S
P
T
E
P
L
F
I
L
I
---
K
I
S
L
A
V
G
F
I
I
A
S
P
V
I
L
Y
Q
--
F
W
R
F
I
E
P
A
L
Y
S
H
E
K
R
A
---
F
I
P
L
L
L
G
S
I
L
L
F
M
L
G
A
L
F
A
Y
F
I
V
L
P
L
A
L
K
F
L
L
G
L
G
F
T
Q
L
-
L
A
T
P
Y
L
S
V
D
M
Y
I
S
F
V
L
K
L
V
V
A
F
G
--
I
A
F
E
M
P
I
V
L
Y
V
L
Q
K
A
G
V
I
T
P
E
Q
L
A
S
F
R
K
Y
F
I
V
-
I
A
F
V
I
G
A
I
I
A
-
P
D
V
S
T
Q
V
L
M
A
I
P
L
L
L
L
Y
E
I
S
I
F
L
G
K
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
66.71
17%
-177
- C4 -
1OEJ
1
ZINT_ECOLI
A:
[7-193]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GKP
L
T
E
V
E
Q
K
A
A
N
G
V
F
D
D
A
N
V
Q
------
N
R
T
L
S
D
W
D
G
V
W
Q
S
--
V
Y
P
L
L
Q
S
G
K
L
D
P
--
V
F
Q
K
K
A
D
A
D
K
T
K
T
F
A
E
I
---
K
D
Y
Y
H
K
G
Y
A
T
D
I
E
M
I
G
I
E
DG
I
V
E
F
H
R
N
N
---
E
T
T
S
C
K
Y
D
Y
D
G
Y
---
K
I
L
T
Y
K
S
G
---------
K
K
G
V
R
Y
L
F
E
C
-------
K
D
P
E
S
K
A
P
K
Y
I
Q
F
S
D
H
------------------------
I
I
A
P
R
K
S
S
H
------
F
-
H
I
F
M
G
N
D
---
S
Q
Q
S
L
L
N
E
M
E
N
W
P
-------
T
Y
Y
P
Y
Q
L
S
S
E
E
V
V
E
E
M
M
S
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
62.40
8%
-161
- C3 -
4FFB
-
STU2_YEAST
C:
[11-272]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
L
P
L
E
E
R
L
-
T
Y
K
L
W
K
A
R
L
E
A
Y
K
E
L
N
Q
L
F
R
N
S
Q
I
Y
W
R
D
P
T
L
F
A
Q
Y
I
T
--
D
S
N
V
--
V
A
Q
E
Q
A
I
V
A
L
N
S
L
I
D
A
F
ALK
N
A
H
N
I
T
L
I
S
T
W
T
P
L
L
V
E
K
--
G
L
T
S
S
R
A
T
T
K
T
Q
S
M
S
C
I
L
S
L
C
G
L
---
D
----------------
T
S
I
T
Q
S
V
E
L
V
I
-
P
F
F
-
E
K
K
L
P
K
L
I
A
A
A
A
N
C
V
Y
E
L
M
A
A
F
G
LT
N
V
N
V
Q
T
F
L
P
E
L
L
K
H
V
P
Q
L
A
G
H
G
D
R
N
V
R
S
Q
T
M
N
-
L
I
V
E
I
Y
K
V
L
F
K
K
L
K
P
I
Q
V
K
D
L
H
K
L
F
A
K
V
G
D
L
F
E
W
E
K
R
E
L
E
K
K
R
S
Q
E
E
E
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
45.88
15%
-157
- C5 -
4HG6
3
?
B:
[36-702]
P
W
I
I
P
L
R
P
LAETAQVGP
L
F
R
L
Q
G
QQA
R
A
A
F
R
L
F
L
P
TEAVGG
T
L
T
L
A
Q
R
S
S
IDILPES
S
Q
I
I
V
R
M
NDQEI
G
R
F
T
P
RQFGA
L
G
A
V
T
M
PLGEAVRAG
D
N
L
V
T
I
E
A
Q
H
R
H
RI
Y
C
G
A
D
A
E
F
D
L
W
T
E
V
DLSQS
G
V
A
L
P
AAAIGTE
P
T
S
F
I
A
A
L
T
A
Q
A
E
SG
R
P
V
E
I
R
T
P
T
P
P
D
E
A
T
L
R
T
L
A
Q
A
L
G
R
P
L
PDEALP
L
A
L
S
K
P
WSAETGPTY
A
R
I
T
L
L
P
S
DADR
V
S
I
R
R
G
G
DG
A
V
V
L
V
L
E
H
PPE
G
S
P
N
A
S
L
V
A
D
L
L
GATPTLPPPT
L
P
Q
I
P
P
GRVVTLADMGVD
T
I
L
T
DNR
Y
F
N
R
D
I
D
F
Q
L
-
P
D
D
W
L
L
L
A
S
Q
K
A
Q
I
G
I
D
--
Y
G
F
A
G
G
L
P
E
G
A
L
L
L
V
K
V
------
N
--
G
T
T
V
R
M
L
P
L
D
R
D
---------------------------------------
A
A
P
V
K
P
R
L
D
I
R
F
---
P
A
R
L
L
H
P
G
---------
P
N
R
L
S
F
E
S
V
I
P
-
G
N
P
P
D
Q
P
C
P
A
S
A
G
D
L
M
Q
V
L
S
S
T
D
L
E
V
P
--
P
S
P
R
M
Q
M
A
-
D
M
A
R
D
L
A
Q
V
T
P
A
S
V
H
P
A
T
P
D
G
L
A
R
T
L
P
F
M
A
A
F
R
E
V
P
D
A
A
P
V
D
L
T
V
A
G
L
H
D
I
A
T
V
P
L
N
E
E
G
L
T
P
R
L
L
A
L
T
L
L
P
S
TG
P
P
A
N
A
LAPLGAAPGEGVMPPLVESN
W
S
D
R
A
Q
T
F
V
Q
A
T
L
Q
P
V
I
Q
T
V
R
R
M
L
RPGDG
N
L
A
E
W
L
A
T
R
KGT
A
M
L
L
A
P
E
PG
K
L
W
V
I
L
G
PEAE
P
A
R
V
A
E
A
L
A
M
APRSPGGPRGQVAVLGSDG
R
W
S
S
W
S
K
PG
L
L
P
E
L
REPVS
L
D
N
V
R
S
V
V
G
N
V
A
S
A
R
P
P
L
L
L
G
G
M
L
G
L
A
W
I
S
A
A
I
A
V
G
F
V
L
R
TR
8
HHSearch
39.39
19%
56
- C6 -
1WRG
-
LHB_RHORT (first)
A:
[9-40]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
G
I
T
E
G
E
A
K
E
F
H
K
I
F
T
S
---
S
I
L
V
F
F
G
V
A
A
F
A
H
L
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
39.02
39%
295
* C6 *
3M6Z
2
?
A:
[255-272]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
L
-
Y
E
H
L
E
E
L
S
E
R
Y
L
R
H
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
34.73
17%
93
- C6 -
1NKZ
6
LHB5_RHOAC
B:
[2-31]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
L
T
A
E
Q
S
E
E
L
H
K
Y
V
I
D
---
G
T
R
V
F
L
G
L
A
L
V
A
H
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
31.81
16%
78
- C6 -
1DX7
-
LHB1_RHOSH
A:
[9-39]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
G
L
T
D
E
Q
A
Q
E
L
H
S
V
Y
M
S
---
G
L
W
L
F
S
A
V
A
I
V
A
H
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
21.61
50%
881
- C1 -
1JY4
-
?
A:
[19-30]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
Q
--
K
W
H
F
V
L
-
G
Y
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
15.04
18%
257
- C6 -
2L0E
-
SL9A1_HUMAN
A:
[227-243]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
L
L
F
G
S
I
I
S
A
V
D
P
V
A
V
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
5.80
36%
1490
- C2 -
1HR8
-
COX4_YEAST
O:
[6-14]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
I
R
F
F
K
P
A
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------