@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0369: (2016-03-14 )
MGRKWANIKEKKASKDKTNSRIYAKFGIEIYVAAKSGDPDPHSNQKLRFVIERAKTYNVPKHIIDRAIEKAKGTGDETYSELRYEGFGPNGSMIIVDALTNNVNRTASDVRAAYSKNGGNMGVSGSVAYMFDNTAIFGVEGKDADELLELLMEADIDVRDILDEDGQAIIYAEPEDFHKVQEGLKAAGIEEFTVAEIEMIPQNDIQLSGEDLEKFERLIDALEDLEDVQKVYHNVELED
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10--........20.....---...30........--40.........50..---------.....------.60........------------------70....-.------...80---------........90........100--------.......-------110....---------.-..120----------..------...----------..-.130.......----140..-------.....---..150----......--.--.160--.-........-170....----...180.----...----..---.190-------.......----.-.200-.--.---------.---..------.-.210..-..-.....220..-.....230.......----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGRKWA
N
I
K
E
K--KASKDKTN
S
R
I
Y
A
K
F
---
G
I
E
I
Y
V
A
AKSGDP--D-PHSN
Q
K
L
R
F
V
I
E
R
---------AKTYN------V
P
K
H
I
I
D
R
A
I
E
------------------
K
AKGTG-D------
E
T
Y
S
E
---------
L
RYEGFGPNG
S
M
I
I
V
D
A
LTNN--------VN
R
T
A
S
D
-------
V
R
A
A
Y
SK---------N-GGNM-----------GV------SG
S
----------
V
A
-
Y
M
FDN
T
A
I
F
GV----E--GK-------
D
A
D
E
L
---
L
E
L
L
-----
M
EADI
D
--
V
--
R
D
----
I
-LDEDG
Q
A
I
-
I
Y
AE
P
E
D
----
F
H
K
V
Q
E
G
----
L
K
A----AG---IE---------
E
F
T
V
A
E
I
----
E
-MIPQ-N--D---------I---QL------S-
G
E
--
D
L
-
E
K
-
F
E
R
L
I
D
A
L
E
D
-
L
E
D
V
Q
K
V
Y
HNVELED----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
96.49
38%
-78
- C7 -
4F3Q
1
Y1566_COXBU
A:
[9-241]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
W
A
N
I
K
H
A
--
K
A
R
Q
D
A
K
R
G
K
V
F
T
K
L
---
I
R
E
I
T
V
A
A
R
L
G
G
E
--
D
-
I
D
S
N
P
R
L
R
A
V
V
D
K
---------
A
F
A
A
N
------
M
P
K
D
T
I
T
R
A
I
K
------------------
R
G
A
-----------
D
N
L
V
E
---------
V
R
Y
E
G
Y
G
P
S
G
V
A
V
M
V
D
C
L
T
D
N
--------
K
N
R
T
V
A
E
-------
V
R
H
A
F
S
K
---------
C
-
D
G
N
L
-----------
G
T
------
E
G
S
----------
V
A
-
Y
L
F
K
Q
R
G
L
I
T
F
P
---
P
--
N
S
-------
D
E
E
K
I
---
M
E
I
A
-----
L
E
--
V
G
--
A
--
E
D
----
V
T
T
N
D
D
G
S
I
D
-
V
T
T
L
P
E
D
----
F
E
K
I
R
N
A
----
M
K
A
----
A
D
---
L
N
---------
P
-
S
H
A
E
V
----
T
-
V
L
A
S
-
T
--
E
---------
V
---
G
L
------
D
-
K
D
--
S
A
-
E
Q
-
M
L
R
L
T
E
M
L
E
D
-
L
D
D
V
Q
N
V
Y
S
N
A
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
91.11
39%
-50
- C7 -
1KON
-
YEBC_ECOLI
A:
[3-240]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
H
S
K
W
A
N
T
R
H
R
--
K
A
A
Q
D
A
K
R
G
K
I
F
T
K
I
---
I
R
E
L
V
T
A
A
K
L
--------
D
A
N
P
R
L
R
A
A
V
D
K
---------
A
L
S
N
N
------
M
T
R
D
T
L
N
R
A
I
A
------------------
R
G
------------
A
N
M
E
T
---------
I
I
Y
E
G
Y
G
P
G
G
T
A
I
M
I
E
C
L
S
D
N
--------
R
N
R
T
V
A
E
-------
V
R
H
A
F
S
K
---------
C
-
G
G
N
L
-----------
G
T
------
D
G
S
----------
V
A
-
Y
L
F
S
K
K
G
V
I
S
F
----
E
--
K
G
-------
D
E
D
T
I
---
M
E
A
A
-----
L
E
A
G
A
E
--
D
---
V
----
V
-
T
Y
D
D
G
A
I
D
-
V
Y
T
A
W
E
E
----
M
G
K
V
R
D
A
----
L
E
A
----
A
G
----
L
---------
K
A
D
S
A
E
V
----
S
-
M
I
P
S
-
T
--
K
---------
A
---
D
M
------
D
-
A
E
--
T
A
-
P
K
-
L
M
R
L
I
D
M
L
E
D
-
C
D
D
V
Q
E
V
Y
H
N
G
E
I
S
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
89.91
39%
-54
- C7 -
1KON
-
YEBC_ECOLI
A:
[6-240]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
W
A
N
T
R
H
R
--
K
A
A
Q
D
A
K
R
G
K
I
F
T
K
I
---
I
R
E
L
V
T
A
A
K
L
--------
D
A
N
P
R
L
R
A
A
V
D
K
---------
A
L
S
N
N
------
M
T
R
D
T
L
N
R
A
I
A
------------------
R
G
-------------
A
N
M
E
T
--------
I
I
Y
E
G
Y
G
P
G
G
T
A
I
M
I
E
C
L
S
D
N
--------
R
N
R
T
V
A
E
-------
V
R
H
A
F
S
K
---------
C
-
G
G
N
L
-----------
G
T
------
D
G
S
----------
V
A
-
Y
L
F
S
K
K
G
V
I
S
F
----
E
--
K
G
-------
D
E
D
T
I
---
M
E
A
A
-----
L
E
A
G
A
E
------
D
----
V
-
V
T
Y
D
D
G
A
I
D
V
Y
T
A
W
E
E
----
M
G
K
V
R
D
A
----
L
E
A
----
A
G
---
L
K
---------
A
D
S
-
A
E
V
----
S
-
M
I
P
S
-
T
--
K
---------
A
---
D
M
------
D
-
A
E
--
T
A
-
P
K
-
L
M
R
L
I
D
M
L
E
D
-
C
D
D
V
Q
E
V
Y
H
N
G
E
I
S
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
84.71
30%
-72
- C7 -
1MW7
-
Y162_HELPY
A:
[21-240]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
V
F
P
K
L
---
A
K
A
I
T
L
A
A
K
D
G
G
S
--
E
-
P
D
T
N
A
K
L
R
T
A
I
L
N
---------
A
K
A
Q
N
------
M
P
K
D
N
I
D
A
A
I
K
------------------
R
A
-
S
S
K
-
E
------
G
N
L
S
E
---------
I
T
Y
E
G
K
A
N
F
G
V
L
I
I
M
E
C
M
T
D
N
--------
P
T
R
T
I
A
N
-------
L
K
S
Y
F
N
K
---------
T
Q
G
A
S
I
-----------
V
P
------
N
G
S
----------
L
E
-
F
M
F
N
R
K
S
V
F
E
C
----
L
--
K
N
-------
E
V
E
N
L
KLS
L
E
D
L
-----
E
F
A
L
I
D
YG
L
--
E
E
----
L
-
E
E
V
E
D
K
I
I
-
I
R
G
D
Y
N
S
----
F
K
L
L
N
E
G
----
F
E
S
----
L
K
---
L
----------
P
I
L
K
A
S
L
----
Q
-
R
I
A
T
-
T
--
P
---------
I
---
E
L
------
N
-
D
E
--
Q
M
-
E
L
-
T
E
K
L
L
D
R
I
E
D
-
D
D
D
V
V
A
L
Y
T
N
I
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
82.57
30%
-65
- C7 -
1MW7
-
Y162_HELPY
A:
[21-240]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
V
F
P
K
L
---
A
K
A
I
T
L
A
A
K
D
G
G
S
--
E
-
P
D
T
N
A
K
L
R
T
A
I
L
N
---------
A
K
A
Q
N
------
M
P
K
D
N
I
D
A
A
I
K
------------------
R
A
S
S
K
E
--------
G
N
L
S
E
---------
I
T
Y
E
G
K
A
N
F
G
V
L
I
I
M
E
C
M
T
D
N
--------
P
T
R
T
I
A
N
-------
L
K
S
Y
F
N
K
---------
T
Q
G
A
S
I
-----------
V
P
------
N
G
S
----------
L
E
-
F
M
F
N
R
K
S
V
F
E
C
----
L
--
K
N
E
V
E
N
L
KL
S
L
E
D
L
---
E
F
A
L
-----
I
D
Y
G
L
E
--
E
---
L
----
E
-
E
V
-
E
D
K
I
I
-
I
R
G
D
Y
N
S
----
F
K
L
L
N
E
G
----
F
E
S
----
L
K
----
L
---------
P
I
L
K
A
S
L
----
Q
-
R
I
A
T
-
T
--
P
---------
I
---
E
L
------
N
-
D
E
--
Q
M
-
E
L
-
T
E
K
L
L
D
R
I
E
D
-
D
D
D
V
V
A
L
Y
T
N
I
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
76.08
38%
12
- C7 -
1LFP
-
Y1575_AQUAE
A:
[7-242]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
A
Q
I
K
H
K
--
K
A
K
V
D
A
Q
R
G
K
L
F
S
K
L
---
I
R
E
I
I
V
A
T
R
L
G
G
P
--
N
-
P
E
F
N
P
R
L
R
T
A
I
E
Q
---------
A
K
K
A
N
------
M
P
W
E
N
I
E
R
A
I
K
------------------
K
G
A
G
E
L
-
E
G-----
E
Q
F
E
E
---------
V
I
Y
E
G
Y
A
P
G
G
V
A
V
M
V
L
A
T
T
D
N
--------
R
N
R
T
T
S
E
-------
V
R
H
V
F
T
K
---------
H
-
G
G
N
L
-----------
G
A
------
S
G
C
----------
V
S
-
Y
L
F
E
R
K
G
Y
I
E
V
----
P
--
A
K
-------
E
V
S
E
-----
E
E
L
-----
L
E
K
A
I
E
--
V
GA
E
D
----
V
-
Q
P
G
E
E
V
H
I
-
I
Y
T
V
P
E
E
----
L
Y
E
V
K
E
N
----
L
E
K
----
L
G
---
V
----------
P
I
E
K
A
Q
I
----
T
-
W
K
P
I
-
S
--
T
---------
V
---
Q
I
------
N
-
D
E
--
E
T
A
Q
K
-
V
I
K
L
L
N
A
L
E
E
-
L
D
D
V
Q
Q
V
I
A
N
F
E
I
P
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
Fugue
75.46
39%
21
- C7 -
1LFP
-
Y1575_AQUAE
A:
[5-247]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
H
W
A
Q
I
K
H
K
--
K
A
K
V
D
A
Q
R
G
K
L
F
S
K
L
---
I
R
E
I
I
V
A
T
R
L
G
G
P
--
N
-
P
E
F
N
P
R
L
R
T
A
I
E
Q
---------
A
K
K
A
N
------
M
P
W
E
N
I
E
R
A
I
K
------------------
K
G
A
G
E
L
-
E
G-----
E
Q
F
E
E
---------
V
I
Y
E
G
Y
A
P
G
G
V
A
V
M
V
L
A
T
T
D
N
--------
R
N
R
T
T
S
E
-------
V
R
H
V
F
T
K
---------
H
-
G
G
N
L
-----------
G
A
------
S
G
C
----------
V
S
-
Y
L
F
E
R
K
G
Y
I
E
V
----
P
--
A
K
EV-----
S
E
E
E
L
---
L
E
K
A
-----
I
E
V
G
A
E
-----
D
V
----
Q
-
P
G
E
-
E
V
H
I
-
I
Y
T
V
P
E
E
----
L
Y
E
V
K
E
N
----
L
E
K
----
L
G
---
V
P
----------
I
E
K
A
Q
I
----
T
-
W
K
P
I
-
S
--
T
---------
V
---
Q
I
------
N
D
E
E
--
T
A
-
Q
K
-
V
I
K
L
L
N
A
L
E
E
-
L
D
D
V
Q
Q
V
I
A
N
F
E
I
P
-EEILQK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
74.91
39%
24
- C7 -
1LFP
-
Y1575_AQUAE
A:
[5-242]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
H
W
A
Q
I
K
H
K
--
K
A
K
V
D
A
Q
R
G
K
L
F
S
K
L
---
I
R
E
I
I
V
A
T
R
L
G
G
P
--
N
-
P
E
F
N
P
R
L
R
T
A
I
E
Q
---------
A
K
K
A
N
------
M
P
W
E
N
I
E
R
A
I
K
------------------
K
G
A
G
E
L
E
G
------
E
Q
F
E
E
---------
V
I
Y
E
G
Y
A
P
G
G
V
A
V
M
V
L
A
T
T
D
N
--------
R
N
R
T
T
S
E
-------
V
R
H
V
F
T
K
---------
H
-
G
G
N
L
-----------
G
A
------
S
G
C
----------
V
S
-
Y
L
F
E
R
K
G
Y
I
E
V
----
P
--
A
K
EV-----
S
E
E
E
L
---
L
E
K
A
-----
I
E
V
G
A
E
--
D
---
V
----
Q
-
P
G
-
E
E
V
H
I
-
I
Y
T
V
P
E
E
----
L
Y
E
V
K
E
N
----
L
E
K
----
L
G
----
V
---------
P
I
E
K
A
Q
I
----
T
-
W
K
P
I
-
S
--
T
---------
V
---
Q
I
------
N
D
E
E
--
T
A
-
Q
K
-
V
I
K
L
L
N
A
L
E
E
-
L
D
D
V
Q
Q
V
I
A
N
F
E
I
P
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
48
Fugue
55.55
18%
-11
- C6 -
5CA8
2
?
A:
[27-687]
DAIQIIDENKHFNTG
I
L
D
Y
I
N
K
T
S
PADVGNN
Y
H
I
I
S
V
F
G
S
Q
STG
K
S
T
L
L
N
R
L
FNTNFDVMG
I
W
L
A
Y
S
P
V
V
S
T
TL
G
H
T
T
S
KS
N
I
L
V
M
D
V
E
GTDED
Q
D
F
E
R
K
A
A
L
F
A
L
S
T
SE
V
L
I
I
N
I
W
E
TQVGLYQGANM
G
L
L
K
T
V
F
E
V
N
L
S
L
F
G
K
S
K
L
E
THND
H
K
V
L
L
L
I
V
I
R
DHVGVTP
V
E
S
L
A
K
T
F
T
L
D
L
Q
N
M
W
S
S
LAKPAELEHLQ
F
A
D
F
F
D
V
T
F
H
A
L
N
HKVLQ
P
K
E
F
G
E
G
I
N
R
L
G
D
R
L
VVSNELFKPEYHHDVPIDG
W
T
M
Y
A
E
R
C
W
E
Q
I
E
T
NKDLD
L
P
T
Q
Q
I
L
V
A
Q
F
K
C
D
E
I
V
E
S
V
F
Q
E
F
L
T
K
Y
Q
H
H
FKEVDAAPDFEEL
G
A
L
F
A
D
L
R
Q
D
A
F
E
D
Y
D
A
S
ASRYN
K
A
V
Y
E
Q
K
R
K
K
L
R
W
L
I
N
D
K
L
K
E
V
F
D
V
H
A
K
N
L
C
N
T
L
L
E
K
F
E
K
D
L
V
A
L
K
G
K
DF
A
V
N
V
K
T
L
S
T
K
L
V
E
D
V
---
N
F
Q
V
S
L
M
S
L
Q
G
D
L
--
S
L
D
E
I
I
L
A
L
T
K
D
I
D
A
---------
I
V
A
K
Q
------
Q
V
V
E
L
N
S
I
V
N
K
------------------
S
V
K
K
L
S
-
A
------
S
L
S
K
S
---------
I
Q
F
E
L
G
D
P
N
---------
E
E
T
--------
W
D
N
V
L
Q
Q
-------
F
K
G
V
Y
E
K
---------
F
-
G
G
D
F
-----------
G
L
------
G
T
S
S
T
Q
N
Q
Q
A
I
E
K
F
K
-
F
K
S
W
C
Q
F
Y
D
V
T
----
H
--
K
L
-------
I
S
R
E
K
---
L
L
A
L
-----
L
Q
D
R
F
D
--
D
--
K
F
----
R
-
Y
D
E
N
G
L
P
K
-
L
Y
L
N
E
Q
D
----
L
E
K
T
F
A
V
----
A
K
Q
----
H
A
L
Q
V
L
P
---------
I
L
T
F
A
K
L
ADGS
E
-
I
V
P
D
-
Y
--
D
---------
I
FDS
K
L
------
R
-
E
Q
--
F
L
-
D
H
C
F
A
E
I
I
T
E
Q
E
K
-
L
E
V
L
A
K
F
K
K
E
V
D
A
K
Y
I
E
T
K
R
S
I
V--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
49.75
18%
-77
- C7 -
2LQJ
-
?
A:
[151-227]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
R
-
V
I
C
R
P
K
A
----
E
T
Y
V
R
A
H
----
I
V
Q
R
T
S
S
N
D
----
I
---------
T
L
R
G
I
R
T
----
G
-
P
A
G
D
-
D
--
N
---------
I
---
T
L
T
A
H
L
L
M
V
-
G
H
--
T
P
-
A
K
-
L
E
R
L
V
A
E
L
S
L
-
Q
P
G
V
Y
A
V
H
W
Y
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
47.77
26%
-60
- C7 -
1YJ7
1
?
A:
[8-83]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
----
T
--
E
K
-------
E
A
N
Q
M
---
Q
A
L
L
-----
L
S
N
D
V
N
--
V
--
S
K
----
E
-
M
D
K
S
G
N
M
T
-
L
S
V
A
A
A
D
----
F
V
R
A
I
T
I
----
L
N
N
----
N
G
---
F
P
---------
K
K
K
F
A
D
I
----
E
-
V
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
49
Fugue
47.74
11%
-64
- C3 -
3HOT
5
MOS1T_DROMA
A:
[5-345]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VPN
K
E
Q
T
R
T
V
L
I
F
C
F
H
L
KKT
A
A
E
S
H
R
M
L
V
E
A
F
G
E
--
Q
V
P
T
V
K
T
C
E
R
W
F
Q
R
F
K
S
G
D
F
D
V
D
D
K
E
H
G
K
P
P
--
K
-
R
Y
E
D
A
E
L
Q
A
L
L
D
E
DDAQTQK
Q
L
A
E
Q
L
E
------
V
S
Q
Q
A
V
S
N
R
L
R
E
M
G
K
I
Q
K
V
G
R
W
V
PHELN
E
R
Q
M
E
R
R
-
K
------
N
T
C
E
I
---------
L
L
S
R
Y
K
R
K
S
F
L
H
R
I
V
T
G
D
E
K
W
--------
I
F
F
V
N
P
K
-------
R
K
K
S
Y
V
D
---------
P
-
G
Q
P
A
T
S
T
A
R
P
N
RF
G
K
K
T
------
M
L
C
----------
V
W
-
W
D
Q
S
G
V
I
Y
Y
E
L
L
K
P
G
E
--
T
V
-------
N
A
A
R
Y
---
Q
Q
Q
L
-----
I
N
L
N
R
A
--
L
--
Q
R
----
K
-
R
P
E
Y
Q
H
R
V
-
I
F
L
H
D
N
A
PSHT
A
R
A
V
R
D
T
----
L
E
T
----
L
N
---
W
E
V
L
PHAAYSP
D
L
A
P
S
D
Y
----
H
-
L
F
A
S
-
M
--
G
---------
H
---
A
L
------
A
-
E
Q
--
R
F
-
D
S
-
Y
E
S
V
K
K
W
L
D
E
W
F
A
A
K
D
D
E
F
Y
W
R
G
I
H
K
LP
E
R
W
E
K
C
V
A
S
D
GKYFE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
46
Fugue
47.17
14%
-7
- C8 -
1SLQ
-
VP4_ROTRH
A:
[253-522]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
I
V
V
S
K
T
S
--
L
W
K
E
M
Q
Y
N
R
D
I
T
I
R
F
---
K
F
A
S
S
I
V
K
S
G
G
L
G
--
Y
-
K
W
S
E
I
S
F
K
P
A
N
Y
Q
---------
Y
T
Y
T
R
------
D
G
E
E
V
T
A
H
T
T
C
------------------
S
V
N
G
M
N
-
D
------
F
N
F
N
G
GSLPT
D
F
V
I
S
R
Y
E
V
I
K
E
N
-
S
Y
V
Y
V
D
Y
W
D
D
S
QAFRNMVY
V
R
S
L
A
A
N
-------
L
N
S
V
I
C
T
G
G
D
Y
S
FALP
V
-
G
Q
W
P
-----------
V
M
------
T
G
G
----------
A
V
-
S
L
H
S
A
G
V
T
L
S
T
----
Q
--
F
T
-------
D
F
V
S
L
---
N
S
L
R
-----
F
R
F
R
L
T
--
V
--
E
E
P
S
F
S
I
-
T
R
T
R
V
S
R
L
-
Y
G
L
P
A
A
N
----
P
N
N
G
K
E
Y
----
Y
E
V
----
A
G
----------------
R
F
S
L
I
----
S
-
L
V
P
S
-
N
--
D
DYQTPI
T
N
S
V
---
T
V
------
R
-
Q
D
--
L
E
-
R
Q
-
L
G
E
L
R
E
E
F
N
A
-
L
S
Q
E
I
A
M
S
Q
L
I
D
L
A
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
46.22
21%
-37
* C7 *
2JSX
-
NAPD_ECOLI
A:
[9-71]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
V
-
V
Q
A
K
S
E
R
----
I
S
D
I
S
T
Q
----
L
N
A
----
F
-----
P
---------
G
C
E
V
A
V
S
----
D
A
P
S
G
Q
-
L
--
I
---------
V
---
V
V
------
E
-
A
E
--
D
S
-
E
T
-
L
I
Q
T
I
E
S
V
R
N
-
V
E
G
V
L
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
46.22
10%
-32
- C7 -
2KO1
-
?
A:
[16-77]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
G
M
----
T
N
Q
I
T
G
V
----
I
S
K
----
F
D
----
T
---------
N
I
R
T
I
V
L
----
N
-
A
K
D
G
I
F
T
C
N
---------
L
---
M
I
------
F
-
V
K
--
N
T
-
D
K
-
L
T
T
L
M
D
K
L
R
K
-
V
Q
G
V
F
T
V
E
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
45.38
23%
-62
- C7 -
1BVO
2
?
A:
[37-123]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
------
K
T
F
P
S
---------
I
Q
V
H
G
Y
R
-
G
R
A
V
V
V
V
S
C
V
T
K
E
--------
G
P
E
H
K
P
H
-------
P
H
N
L
V
G
K
---------
E
-
G
C
K
K
-----------
G
V
C
T
V
E
I
N
S
T
T
----------
M
S
-
Y
T
F
N
N
L
G
I
Q
C
V
----
K
--
K
K
-------
D
V
E
E
A
---
L
R
L
R
-----
Q
E
I
R
V
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
51
Fugue
45.32
14%
-15
- C5 -
4M59
3
?
A:
[6-714]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PD
A
Q
V
L
V
L
A
I
S
S
HPLPT
L
A
A
F
L
A
S
R
R
D
E
L
L
R
AD
I
T
S
L
L
K
A
L
E
L
S
GH
W
E
W
A
L
A
L
L
R
W
A
G
K
E
GAAD
A
S
A
L
E
M
V
V
R
A
L
G
R
E
GQ
H
D
A
V
C
A
L
L
D
ETPLPPG
S
R
L
D
V
R
A
Y
T
T
V
L
H
A
L
S
R
A
GR
Y
E
R
A
L
E
L
F
A
E
L
R
R
Q
G
V
A
P
T
L
V
T
Y
N
V
V
L
D
V
Y
G
R
M
G
R
S
W
P
R
I
V
A
L
--
L
D
E
M
R
A
A
G
V
E
P
D
G
F
T
---
A
S
T
V
I
A
A
C
S
R
D
G
L
--
V
-
D
E
A
V
A
F
F
E
D
L
K
A
R
---------
G
H
A
---------
P
S
V
V
T
Y
N
A
L
L
------------------
Q
V
F
G
K
A
-
G
N
Y
T
E
A
L
R
V
L
G
E
---------
M
E
Q
N
G
C
Q
P
D
A
V
T
Y
N
E
L
A
G
T
E
E
--------
A
A
R
C
L
D
T
M
A
SPN
A
F
T
Y
N
T
V
M
T
---------
A
-
Y
G
N
V
-----------
G
K
------
V
D
E
----------
A
L
-
A
L
F
D
Q
M
K
K
T
G
F
----
V
P
N
V
N
-------
T
Y
N
L
V
---
L
G
M
L
G
K
K
SR
F
T
V
M
L
E
--
M
--
L
G
----
E
-
M
S
R
S
G
C
T
P
-
N
R
V
T
W
N
T
----
M
L
A
V
S
G
K
-----------
R
G
---
M
E
---------
D
Y
V
T
R
V
L
----
E
-
G
M
R
S
-
S
--
G
---------
V
---
E
L
------
S
-
R
D
--
T
Y
-
N
T
-
L
I
A
A
Y
G
R
C
G
S
-
R
T
N
A
F
K
M
Y
N
E
M
T
S
A
G
F
T
P
C
I
T
T
Y
N
A
L
L
N
V
L
S
R
Q
GD
W
S
T
A
Q
S
I
V
S
K
M
R
T
K
G
F
K
P
N
E
Q
S
Y
S
L
L
L
Q
C
Y
A
K
G
GN
V
A
G
I
A
A
I
E
N
E
V
Y
GSGAVFPS
W
V
I
L
R
T
L
V
I
A
N
F
K
C
RR
L
D
G
M
E
T
A
F
Q
E
V
K
A
RG
Y
N
P
D
L
V
I
F
N
S
M
L
S
I
Y
A
K
N
GM
Y
S
K
A
T
E
V
F
D
S
I
K
R
S
G
L
S
P
D
L
I
T
Y
N
S
L
M
D
M
Y
A
K
C
SE
S
W
E
A
E
K
I
L
N
Q
L
K
C
SQTMKPD
V
V
S
Y
N
T
V
I
N
G
F
C
K
QGL
V
K
E
A
Q
R
V
L
S
E
M
V
A
D
G
M
A
P
C
A
V
T
Y
H
T
L
V
G
G
Y
S
S
LEMF
S
E
A
R
E
V
I
G
Y
M
V
QHGLKPMEL
T
Y
R
R
V
V
E
S
Y
C
R
AF
E
E
A
R
G
F
L
S
EVKAL
E
A
Y
I
E
D
A
45
Fugue
45.26
13%
-18
* C8 *
4ZK9
3
?
A:
[11-269]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
E
K
--
A
N
F
C
S
T
H
N
D
E
V
Y
A
R
F
---
R
L
Q
M
R
V
G
V
R
H
S
P
L
--
Y
-
T
P
S
N
M
C
------------------
M
L
D
------
I
E
D
S
V
E
D
I
E
E
S
------------------
T
E
K
E
Y
A
-
S
------
T
A
T
G
E
---------
A
-------
A
G
V
N
V
S
V
A
L
V
G
E
G
--------
V
S
I
P
F
S
Y
-------
I
G
L
G
F
N
P
---------
S
-
L
E
D
S
-----------
Y
L
------
Y
V
N
----------
V
S
S
R
A
P
W
V
K
Q
T
S
D
L
----
S
--
A
N
-------
G
G
W
G
I
---
K
Q
V
L
-----
E
K
E
L
L
A
--
I
--
Q
I
----
G
-
C
D
N
Q
K
F
------
P
E
A
D
----
I
D
F
S
L
L
V
DPRC
V
T
S
----
V
D
---
L
H
V
--------
E
L
R
D
A
C
I
----
D
-
Y
K
Q
E
-
S
--
P
---------
L
---
S
L
------
K
-
G
K
Y
G
D
G
-
E
L
-
V
K
K
E
I
K
D
V
G
K
-
N
H
N
M
C
S
L
N
L
N
P
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
45.19
23%
5
- C7 -
2YP8
9
?
A:
[72-199]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
D
P
QC
D
-
G
F
Q
N
K
K
W
D
L
F
V
E
R
---------
S
K
A
Y
S
N
C
Y
P
Y
D
V
P
D
Y
A
S
L
R
S
L
V
------------------
A
S
S
G
T
L
-
E
------
F
N
N
E
S
---------
F
N
W
T
G
V
T
Q
N
G
T
S
S
A
C
K
R
K
S
N
N
--------
S
F
F
S
R
L
N
-------
W
L
T
H
L
K
F
---------
K
-
Y
P
A
L
-----------
N
V
------
T
M
P
----------
N
N
-
E
K
F
D
K
L
Y
I
W
G
V
----
H
H
P
G
T
-------
D
N
D
Q
I
---
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
44.74
23%
5
- C7 -
2YP7
7
?
A:
[72-199]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
D
P
QC
D
-
G
F
Q
N
K
K
W
D
L
F
V
E
R
---------
S
K
A
Y
S
N
C
Y
P
Y
D
V
P
D
Y
A
S
L
R
S
L
V
------------------
A
S
S
G
T
L
-
E
------
F
N
N
E
S
---------
F
N
W
T
G
V
T
Q
N
G
T
S
S
A
C
K
R
K
S
N
N
--------
S
F
F
S
R
L
N
-------
W
L
T
H
L
K
F
---------
K
-
Y
P
A
L
-----------
N
V
------
T
M
P
----------
N
N
-
E
K
F
D
K
L
Y
I
W
G
V
----
H
H
P
G
T
-------
D
N
D
Q
I
---
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------