@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0377: (2016-03-15 )
MAFEIVELKKETFTGNKVEIPEFDPQKGFGPMSEIKEAAYTKFAKNEKDYVGINASLDGLQYYIVASTNGENGDTTFDIPEGKYAKFVTSETDRPALDGFIGASYGEVGQSDTVGIAGSFNLEDLREAEFTLYIPVVSK
Atome Classification :
(20 SA)
------------------------------...-.--.....10......------------..20---..----.-------.--.---------.----.-.30...-...--..40.....---------...-------50----------..------...-------.-----.------.----60-......----.-------.----.70-----------------------...--------..-...80........90------..-.-.----.....100-.------------......110-----.......---.120..-----....---------.-.130..--------.....-----------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------M
A
F
-
E
--
I
V
E
L
K
K
ETFTGNK------------VEIP---EF----D-------P--Q---------K----G-FG
P
M
S
E
-
I
K
E
--
A
A
Y
T
K
FAKN---------EK
D
-------
Y
V
----------GI------NAS-------L-----D------G----
L
--
Q
Y
Y
I
V
A
----S-------T----NGE-----------------------NGD--------
T
T
-
F
DIPEG
K
Y
A
K
F
VTS-------ET-D-R----PAL
D
G
F
IG-A------------SYGEVGQS------D
T
V
G
IAG---SF-
N
L
E
-----
D
L
RE---------A-
E
F
T
L
Y
I
--------PVVSK-----------
26
Fugue
90.30
17%
-57
- C3 -
1JYH
-
SBMC_ECOLI
A:
[1-155]
------------------------------
M
N
Y
-
E
--
I
K
Q
E
E
K
R
T
V
A
G
F
H
------------
L
V
G
P
-----------------
W
--
E
---------
Q
----
T
-
V
K
K
G
F
E
-
Q
L
M
--
M
W
V
D
S
K
N
I
V
---------
P
K
E
-------
W
V
----------
A
V
Y
YDNPD
E
T
P
-------
A
-----
E
------
K
----
L
--
R
C
D
T
V
V
----
T
V
P
GYFTL
P
----
E
N
S
-----------------------
E
G
V
--------
I
L
-
T
E
I
T
G
G
Q
Y
A
V
A
V
A
R
V
V
G
DD
F
A
K
P
-
W
-
Y
----
Q
F
F
N
S
L
L
Q
-
D
------------
S
A
Y
E
M
L
P
K
------
P
C
F
E
V
Y
L
---
N
--
N
G
A
-----
E
D
G
Y
---------
W
-
D
I
E
M
Y
V
--------
A
V
Q
P
K
-----------
18
HHSearch
88.74
15%
-53
* C3 *
1D5Y
-
ROB_ECOLI
A:
[124-288]
------------------------------
P
E
H
-
K
--
F
V
T
L
E
D
T
P
L
I
G
V
T
------------
Q
S
Y
S
---
C
S
----
L
-------
E
Q-
I
S
D
F
R
H
E
M
R
Y
Q
----
F
-
W
H
D
F
L
G
----------
N
A
P
T
I
---------
P
P
V
-------
L
Y
----------
G
L
------
N
E
T
R
P
S
QDKD
D
-----
E
------
Q
----
E
--
V
F
Y
T
T
A
----
L
-------
A
----
Q
D
Q
ADGYV------------------
L
T
G
--------
H
P
-
V
M
L
Q
G
G
E
Y
V
M
F
T
Y
E
-------
G
L
-
G
------
T
G
V
Q
E
F
I
L
-
T
------------
V
Y
G
T
C
M
P
M
------
L
N
L
T
R
R
K
---
G
Q
-
D
I
E
-----
R
Y
Y
P
AEDDRP
I
--
N
L
R
C
E
L
L
I
--------
P
I
R
R
K
-----------
19
HHSearch
86.11
18%
-40
- C3 -
1JYH
-
SBMC_ECOLI
A:
[1-155]
------------------------------
M
N
Y
-
E
--
I
K
Q
E
E
K
R
T
V
A
G
F
H
------------
L
V
G
P
---
W
E
----
Q
-------
T
V
-
K
---------
K
----
G
-
F
E
Q
L
M
M
-
W
V
D
--
S
--
K
N
I
V
-----------
P
K
E
-------
W
V
----------
A
V
------
Y
Y
D
-------
N
PDETP
A
------
E
----
K
--
L
R
C
D
T
V
----
V
-------
T
----
V
P
G
YFTLPENS---------------
E
G
V
--------
I
L
-
T
E
I
T
G
G
Q
Y
A
V
A
V
A
R
-------
V
V
-
G
------
D
D
F
A
K
P
W
Y
-
Q
------------
F
F
N
S
L
L
Q
D
------
S
A
Y
E
M
L
P
---
K
P
-
C
F
E
-----
V
Y
L
N
NGAEDG---
Y
W
D
I
E
M
Y
V
--------
A
V
Q
P
K
-----------
30
Fugue
79.34
17%
-51
- C3 -
1BOW
1
BMRR_BACSU
A:
[1-158]
------------------------------
R
L
G
-
E
--
V
F
V
L
D
E
E
E
I
R
I
I
Q
------------
T
E
A
E
-----------------------------------
G
-
I
G
P
E
N
V
-
L
N
A
SY
S
K
L
K
K
F
I
E
S
---------
N
N
S
-------
Y
G
----------
A
T
F
S
FQP-
Y
T
S
-------
I
-----
D
------
E
----
M
--
T
Y
R
H
I
F
----
T
-------
P
V
LIS
S
I
T
-----------------------
P
D
M
--------
E
I
-
T
T
I
P
K
G
R
Y
A
C
I
A
Y
N
-------
F
S
-
P
-
E
----
H
Y
F
L
N
L
Q
K
L
I
------------
K
Y
I
A
D
R
Q
L
------
T
V
V
S
D
V
Y
---
E
L
-
I
I
P
-----
I
H
Y
E
---------
Y
-
R
V
E
M
K
I
--------
R
I
L
-------------
17
HHSearch
76.56
15%
-41
- C3 -
3GK6
1
?
A:
[20-170]
------------------------------
Q
G
M
-
N
--
I
S
E
I
N
G
F
E
V
T
G
F
V
------------
V
R
T
T
---
N
A
----
D
E
M
NPMTA
K
I
-
G
---------
N
----
L
-
W
E
K
F
Y
L
-
N
A
-----
A
P
K
L
T
D
----------
K
S
K
-------
V
Y
----------
G
L
------
Y
T
N
-------
Y
ESDF-
T
------
G
----
A
--
F
D
V
I
A
C
----
S
-------
D
----
T
L
S
PQLL-------------------
S
E
S
--------
V
K
-
T
K
V
S
S
G
K
Y
V
T
F
S
A
T
-------
G
E
-
M
-
P
----
Q
V
V
I
D
L
W
N
-
E
------------
V
W
N
Y
F
A
--------
C
P
H
K
R
A
Y
---
T
T
-
D
F
E
-----
Y
Y
K
S
---------
A
N
T
V
E
I
S
I
--------
A
V
R
-------------
16
HHSearch
76.00
13%
-44
- C3 -
3LUR
6
?
A:
[2-158]
------------------------------
M
E
Y
-
Q
--
L
Q
Q
L
A
S
L
T
L
V
G
I
K
------------
E
T
Y
E
---
N
G
R
Q
A
Q
Q
-------
H
I-
A
---------
G
----
F
-
W
Q
R
C
Y
Q
E
G
V
I
--
A
D
L
Q
L
K
N
N
G
D--------
L
A
G
-------
I
L
----------
G
L
------
C
I
P
-------
E
L----
D
------
G
----
K
--
M
S
Y
M
I
A
----
V
-------
T
----
G
D
N
S
ADI-------------------
A
K
Y
--------
D
V
-
I
T
L
A
S
S
K
Y
M
V
F
E
A
Q
-------
G
A
-
V
-
P
K
A
V
Q
Q
K
M
E
E
V
H
H
-
Y
------------
I
H
Q
-
Y
Q
---------
A
N
T
V
K
S
---
A
P
-
F
F
E
-----
L
Y
Q
D
GDTTSE---
K
Y
I
T
E
I
W
M
--------
P
V
K
G
------------
28
Fugue
74.42
16%
-40
- C3 -
3GK6
1
?
A:
[15-170]
--------------------------ENLY
F
Q
G
M
N
--
I
S
E
I
N
G
F
E
V
T
G
F
V
------------
V
R
T
T
---
N
-----
A
-------
D
--
E
M
--------
N
----
P
M
T
A
K
I
G
N
-
L
W
E
--
K
F
Y
L
N
A
A
P
K
---------
L
T
D
K
S
K
V
Y
G
L
Y
T
----------
N
Y
------
E
S
D
-------
F
-----
T
------
G
----
A
--
F
D
V
I
A
C
SDTL
S
-------
P
----
Q
L
L
-----------------------
S
E
S
--------
V
K
-
T
K
V
S
S
G
K
Y
V
T
F
S
A
T
-------
G
E
M
P
-
Q
----
V
V
I
D
L
W
N
E
-
V
------------
W
N
Y
F
---
A
------
C
P
H
K
R
A
Y
---
T
T
-
D
F
E
-----
Y
Y
K
S
A--------
N
-
T
V
E
I
S
I
--------
A
V
R
-------------
22
HHSearch
68.12
9%
-51
- C3 -
1R8E
9
BMRR_BACSU
A:
[124-277]
--------------------------------
V
-
F
--
V
L
D
E
E
E
I
R
I
I
Q
T
E
------------
A
E
G
I
---
G
P
----
E
-------
N
VL
N
---------
A
----
S
-
Y
S
K
L
K
K
-------
F
I
E
S
A
D
G
F
---------
T
N
N
-------
S
Y
----------
G
A
------
T
F
S
-------
F
-----
Q
PYTSID
E
----
M
--
T
Y
R
H
I
F
----
T
-------
P
----
V
L
T
NKQISSIT---------------
P
D
M
--------
E
I
-
T
T
I
P
K
G
R
Y
A
C
I
A
Y
N
-------
F
S
-
P
------
E
H
Y
F
L
N
L
Q
-
K
------------
L
I
-
K
Y
I
A
D
------
R
Q
L
T
V
V
S
----
D
-
V
Y
E
-----
L
I
I
P
IHYSPKKQ
E
E
Y
R
V
E
M
K
I
--------
R
I
A
-------------
33
Fugue
66.96
20%
19
- C5 -
3R0R
4
?
A:
[33-226]
------------------------------
H
P
F
-
T
NG
I
F
N
T
R
L
S
R
T
F
G
Y
T
I
K
R
TTVK
T
P
S
W
A
V
D
M
M
---
R
F
----
N
-------
I
--
N
---------
D
FLPP
G
-
G
G
S
N
P
R
-
S
V
P
--
F
E
Y
Y
R
I
R
K
V
---------
K
V
E
-------
F
W
P
CSPITQGD
R
G
V
------
G
S
S
-------
A
-----
V
------
I
----
L
--
D
D
N
F
V
T
----
K
-------
A
----
T
A
L
-----------------------
T
Y
D
PYVNYSS
R
H
T
-
I
T
Q
P
F
S
Y
H
S
R
Y
F
T
P
------------
K
----
P
V
L
D
S
T
I
D
-
Y
F
Q
P
NNKRN
Q
L
W
L
R
L
Q
T
A
G
N
V
------
D
H
V
G
L
G
T
---
A
F
-
E
-
N
-----
S
I
Y
D
---------
Q
-
E
Y
N
I
R
V
--------
T
M
Y
V
Q
F
R
E
F
N
L
K
D
P
P
L
11
PsiBlast_PDB
58.58
24%
-34
- C3 -
4MNR
-
?
A:
[316-419]
--------------------------------------------------------------------------------------------------------
G
P
Q
A
T
-
V
L
E
--
M
A
M
--------------------------
V
----------
G
T
------
A
I
A
-------
N
-----
D
------
G
----
V
IM
Q
P
Y
L
V
D
----
S
-------
V
----
N
N
A
-----------------------
N
G
E
--------
R
S
-
F
S
A
S
P
T
K
L
M
Q
A
V
S
K
-------
T
T
-
A
-
G
----
R
V
R
D
V
L
L
G
-
V
------------
V
Q
N
G
T
G
T
A
AAIPG
I
D
V
A
G
K
T
G
---
T
A
-
E
K
E
-----
N
G
N
D
---------
S
-
W
F
V
G
M
A
--------
P
---------------
20
HHSearch
57.12
10%
-24
- C3 -
3B49
2
?
A:
[23-211]
------------------------------
R
K
P
-
E
--
R
I
F
V
P
E
M
N
F
L
M
V
D
------------
G
K
G
D
---
P
D
----
G
E
------
E
Y
-
Q
---------
K
----
A
-
V
Q
S
L
Y
A
I
A
Y
T
--
I
K
M
S
K
M
G
E
T
RLDG
Y
S
D
F
V
V
P
P
-------
L
E
----------
G
F
------
W
W
S
EGK----
F
DLKD-
R
------
D
----
A
--
W
L
W
T
S
I
----
L
-------
R
----
Q
P
D
FVT
E
E
V
L
E
W
A
K
E
V
A
R
K
K
KPDVDT
S
R
V
--------
K
L
-
V
R
F
E
E
G
E
C
V
Q
M
M
H
V
-------
G
P
-
F
------
S
E
E
V
H
T
V
A
-
E
------------
M
H
-
Q
F
M
E
T
------
E
G
L
R
N
D
T
GAI
R
K
-
H
H
E
-----
I
Y
L
S
DPRKANPE-
K
M
K
T
I
L
R
L
--------
P
V
S
-------------
12
PsiBlast_PDB
53.51
30%
-42
- C1 -
1CYG
-
CDGT_GEOSE
A:
[468-513]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
-----------------------
N
G
S
--------
V
N
A
F
D
L
G
P
G
E
V
G
V
W
A
Y
S
-------
A
T
-
E
-
S
----
T
P
I
I
G
H
V
G
-
P
------------
M
M
G
Q
V
G
H
Q
------
V
T
I
---------------------------------------------------------------
21
HHSearch
47.08
9%
14
- C3 -
3E0H
-
?
A:
[7-158]
------------------------------
F
V
C
-
E
--
L
K
E
L
A
P
V
P
A
L
L
I
R
------------
T
Q
T
T
---
M
S
----
E
-------
L
--
G
---------
S
----
L
-
F
E
A
G
Y
H
-
D
I
L
--
Q
L
L
A
G
-
Q
G
K
S--------
P
S
G
P
------
P
F
----------
A
R
------
Y
F
G
M------
S
-----
A
------
G
----
T
--
F
E
V
E
F
G
----
F
-------
P
----
V
E
G
G
V
E
G
S
------------------
G
R
V
--------
V
T
-
G
L
T
P
S
G
K
A
A
S
S
L
Y
I
-------
G
P
-
Y
------
G
E
I
E
A
V
Y
D
-
A
------------
L
M
-
K
W
V
D
D
------
N
G
F
D
L
-
S
---
G
E
-
A
Y
E
-----
I
Y
L
D
NPAETAPD-
Q
L
R
T
R
V
S
L
--------
M
L
H
E
S
-----------
34
Fugue
44.75
11%
4
- C3 -
1P9Y
1
TIG_ECOLI
A:
[4-120]
--------------------------------------
M
Q
V
S
V
E
T
T
Q
G
L
G
------------
R
R
V
T
---
I
T
----
I
-------
A
----------------------
A
D
S
-
I
E
T
--
A
V
K
S
E
L
V
N
V
---------
A
K
-----------------------------------------------------------------------------
K
----
V
R
I
-----------------------
D
G
L
--------
R
K
-
G
K
V
P
M
N
I
V
A
Q
R
Y
G
A
-------
S
V
-
R
-
Q
----
D
V
L
G
D
L
M
S
-
R
------------
N
F
I
D
A
I
I
K
------
E
K
I
N
P
A
G
---
A
P
-
T
Y
V
P
G
EYK
L
G
E
D
---------
F
-
T
Y
S
V
E
F
--------
E
V
Y
P
E
VEL--------
32
Fugue
42.09
16%
22
* C5 *
2L4O
-
?
A:
[19-193]
METASAATVFAAGTTTT
S
V
T
V
H
K
L
L
A
TDGD
M
D
K
-
I
--
A
N
E
L
E
T
G
N
Y
A
G
N
K
------------
V
G
V
L
---
P
A
----
N
-------
A
--
K
---------
E
----
I
-
A
G
V
M
F
V
-
W
T
N
--
T
N
N
E
I
I
D
E
N
---------
G
Q
T
-------
L
G
----------
V
N
------
I
D
P
-------
Q
-----
T
------
F
KLSG
A
--
M
P
A
T
A
M
----
K
-------
K
----
L
T
E
-----------------------
A
E
G
--------
A
K
-
F
N
T
A
N
L
P
A
A
K
Y
K
I
Y
-------
E
I
-
H
-
S
----
L
------
S
-
T
------------
Y
V
G
E
D
G
A
T
------
L
T
G
S
K
A
V
---
P
I
-
E
I
E
-----
L
P
L
N
---------
D
-
V
V
D
A
H
V
Y
P
K
N
T
E
AK
P
K
I
L
E
-----------
23
HHSearch
40.83
5%
-45
- C3 -
3R8J
1
HEBP2_HUMAN
A:
[128-201]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
D
V
--------
F
I
-
E
D
R
A
E
M
T
V
F
V
R
S
F
D
-------
G
F
-
S
S
A
----
Q
K
N
Q
-
E
Q
L
-
L
------------
T
L
A
S
I
L
R
E
------
D
G
K
V
F
D
E
---
K
V
Y
Y
T
A
-----
G
Y
N
S
PVKLL----
N
R
N
N
E
V
W
L
--------
I
Q
K
N
------------
3
PsiBlast_PDB
39.88
35%
34
- C6 -
2UV8
-
?
G:
[1202-1239]
------------------------------
I
Q
M
-
E
--
M
I
E
--
N
R
T
M
D
G
K
P
------------
V
S
L
P
LLY
N
F
----
N
-------
P
--
D
---------
N
----
G
-
F
A
P
I
S
E
-
V
M
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
39.87
10%
17
- C3 -
2NSC
-
TIG_THEMA
A:
[1-109]
--------------------------------------
M
E
V
K
E
L
E
R
D
K
N
R
------------
V
V
L
E
---
Y
V
----
F
-------
G
--
A
---------
E
----
E
-
I
A
Q
A
E
D
-
K
A
V
--
R
Y
L
N
Q
--------------------------------------------------------------------------------------------
R
----
V
E
I
-----------------------
P
G
F
--------
R
K
-
G
R
I
P
K
N
V
L
K
M
K
L
-
G
-------
E
E
-
F
-
Q
----
E
Y
T
L
D
F
L
M
-
D
------------
L
I
P
D
T
L
K
D
------
R
K
L
I
L
S
P
---
I
V
-
T
E
R
-----
E
L
K
D
---------
V
-
T
A
R
V
V
V
--------
E
V
H
E
E
P----------
2
PsiBlast_PDB
37.05
35%
32
- C6 -
3HMJ
-
FAS1_YEAST
G:
[1219-1256]
------------------------------
I
Q
M
-
E
--
M
I
E
--
N
R
T
M
D
G
K
P
------------
V
S
L
P
LLY
N
F
----
N
-------
P
--
D
---------
N
----
G
-
F
A
P
I
S
E
-
V
M
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
37.05
35%
32
* C6 *
2VKZ
-
FAS1_YEAST
G:
[1219-1256]
------------------------------
I
Q
M
-
E
--
M
I
E
--
N
R
T
M
D
G
K
P
------------
V
S
L
P
LLY
N
F
----
N
-------
P
--
D
---------
N
----
G
-
F
A
P
I
S
E
-
V
M
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------