@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0400: (2016-03-15 )
MKGKLNEAKDHLMSGISYALPVIIAGSLVVAVAKLIGIIGGVTNLDAYADASGFYHYVYLFQNVGWAAIGLLNLVLAGYIAYSIAGKPALAAGFVGGVLATSTNAGFLGAVVAGFFAGWLTNWVKKHVRITGPAASSLPLIILPLITVGATGILMSLILGGPLGWLNQTLLDWVTEMCKNDTNVIILALILGAMIGFDLGGPVNKAAWMAGNALFMSGIYLPSIMINVAICIPPLGYGIATLLRKKNYSTTFKEAGNGALIMGLIGVTEGAIPFTLRSPGKLIPLNVIACAIGSAVTMGLGAYVKMPPIGGMYGFFTIGNGWAYLVGGLVGAFIIGICANLFVNFTEEETAAADDVLDDIDISFDEIEIK
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------.........10........20...--..------...30......----..40-........-50........60-........70.......-.80.--.....---..90.---......--.-100------------------------.-----------------------------.---......110.......120.-....---..-130.------......140-....-.---------....-150..-.-...----.160.......--170.----......-180.--......190..---------...-..200...--.....210..---------....------.220-.--..------.---....230---------------..------...-....240.---..-------------..---..250....--...260---..---......-.-270---...---..-..280...--....290.......300----------..-.....310......-------.320......---------------.330--....-.....340.....-...350-------.......360.......370----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------MKGK
L
N
E
A
K
D
H
L
M
S
G
I
S
Y
A
L
P
V
I
I--A
G
------
S
L
V
V
A
V
A
K
L
I
G
----
I
IGG-VTNL
D
A
YA-DASG
F
Y
H
Y
V
Y
L
F-QNV
G
W
A
A
I
G
L
L
N
L
V
L
A
G
-
Y
I
A
Y
--SIAGK---
P
A
L
A
A
---
G
F
VG
G
V
--
L
-AT-------------------------S-----------------------------T---NA
G
F
L
G
A
V
V
A
G
F
F
A
G
W
L
T
N
W
-
V
K
K
H
---
V
R
-ITGP------AASSL
P
L
---
I
I
L
P
-
L
---------
I
T
VG-
A
T
G
I
L
-
M
-
S
L
I
----LGG
P
L
G
W
L
N
Q
T
--
L
L
D
W
----
V
T
E
M
CK-NDT
N
--
V
I
I
L
A
L
I
L
G
A
M
---------
I
G
F-DLG-GPV
N
--
K
A
A
W
MAG
N
A
L
---------
F
MSG------IY-L-P--
S
I
------
M
---
I
N
V
A
I
-----------------CI------PP
L
-
G
Y
G
I
A
T
L
L
---RK-------------KN---YST
T
F
KEAG--N
G
A
L
-----
I
M
---
G
L
IGVT-E-GA
I
---
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F
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---LR-SPG
K
L
I
P
L
--
N
V
I
A
C
A
I
G
S
A
V
T
MGL
G
A
----------
Y
V
-KMPPIGG
M
Y
G
F
F
T
I-------GN
G
W
A
Y
L
V
G
G
---------------
L
V
----
G
A
F
I
-
I
G
I
C
A
N
-
L
F
VNFT-EEETAA-------ADDVLDDIDISF
D
E
I
E
IK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
80.00
17%
-143
- C3 -
4D10
-
CSN3_HUMAN
C:
[3-403]
------------------------------------------------------------------------------------------------
S
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---
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--
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T
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L
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P
Q
E
A
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K
----------
Y
V
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M
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I
F
A
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I
N
Q
-------
K
D
G
M
V
S
F
H
D
N
---------------
P
E
KYNN
P
A
M
L
-
H
N
I
D
Q
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-
M
L
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C
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L
D
E
R
L
K
-------
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I
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V
N
P
Q
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
76.78
18%
-141
- C4 -
4XVK
4
DPOLN_HUMAN
A:
[1-666]
KKHFCDIRHLD
D
W
A
K
S
Q
L
I
E
M
L
K
Q
AA
A
L
V
I
T
V
M
Y
TDGSTQLGADQTPVSSVR
G
I
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L
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RQACGPVLEGFVSDD
P
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IEHSAIWD
Q
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C
FN
A
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------
D
F
V
R
I
V
L
Q
F
F
G
----
N
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G
----
S
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K
H
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A
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A
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-
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Q
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A
-------------
L
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---
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T
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--
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------------------------------------
P
R
A
M
F
V
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-------
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K
G
H
T
F
L
A
A
D
---------------
F
S
----
Q
------
I
E
L
R
-
I
L
T
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L
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G
D
P
E
L
L
K
-------
L
D
D
V
F
S
T
L
T
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Q
W
K
D
V
P
V
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QVT
H
A
D
R
E
Q
T
K
K
V
V
Y
A
V
V
Y
GAG
K
E
R
L
A
A
C
L
GVP
I
Q
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A
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L
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F
L
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SHTLTARLVAQIHD
E
L
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T
M
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LEQVQALELQLQ
V
P
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A
GRSWGHLVPLQ
19
Fugue
70.69
15%
-112
- C5 -
3QNQ
8
?
A:
[3-434]
-------------------------------------------------------------------------------RFLEKYV
M
P
V
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V
A
E
Q
R
H
L
L
A
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--
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------
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---------
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A
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---
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A
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--
T
-
F
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-------------------------
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A
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D
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A
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N
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M
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P
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---
M
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N
P
L
L
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V
L
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I
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Y
F
A
M
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-
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A
A
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W
T
T
P
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L
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----
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V
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G
E
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
70.58
17%
-126
- C2 -
4CZB
1
NAH1_METJA
A:
[1-415]
------------------------------------------------------------------------------------------
M
E
L
M
M
A
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L
N
-------------------------
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R
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------
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E
V
A
I
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A
E
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I
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S
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--
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L
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A
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F
H
-
E
Y
V
A
--
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L
V
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A
M
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---------
L
Y
V
G
D-----
D
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L
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G
Y
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-----------------
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A
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---
F
R
-------------
A
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Y
K
Y
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F
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Y
F
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A
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S
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P
L
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F
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V
V
P
A
A
L
A
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-------
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I
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I
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K
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A
DKIPA
S
I
T
K
Y
IT
P
T
D
I
A
----
G
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F
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-------
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M
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A
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L
L
G
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
57.86
11%
-108
- C1 -
3FAY
1
A:
[3-381]
-------------------------------------------------------------------------------------------
A
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K
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K
R
E
K
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E
A
Y
Q
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Y
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----------------
N
P
T
Y
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A
K
----
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L
Y
N
Y
A
S
N
Q
R
E
E
Y
L
L
L
R
L
F
K
T
A
L
Q
E
-
E
I
K
S
--
K
V
D
Q
I
---
Q
E
I
V
T
---
G
N
P
T
V
I
K
M
V
-
V
S
-------------------------
F
-----------------------------
N
---
R
G
A
R
G
Q
N
A
L
R
Q
I
L
A
P
V
V
K
E
I
M
D
D
K
S
---
L
N
-
I
K
T
D
------
P
V
D
I
Y
K
S
---
W
V
N
Q
M
E
---------
S
Q
T
G
-
E
A
S
K
L
-
P
-
Y
D
V
----
T
P
E
Q
A
L
A
H
E
E
V
--
K
T
R
L
----
D
S
S
I
R
N
M
R
A
V
T
--
D
K
F
L
S
A
I
V
S
S
V
---------
D
K
I
-
P
Y
G
M
R
F
I
A
--
K
V
L
K
D
S
L
H
E
K
---------
F
P
D
A
------
G
E
-
D
-
E
--
L
L
------
K
---
I
I
G
N
L
-----------------
L
Y
------
Y
R
Y
M
N
P
A
I
V
A
P
D
---
A
F
-------------
D
I
---
I
D
L
S
A
G
G
Q
L
--
T
T
D
Q
-----
R
R
---
N
L
G
S
I
A
-
K
M
L
Q
H
---
A
A
S
---
N
K
M
F
L
G
D
N
A
H
L
--
S
I
I
N
E
Y
L
S
Q
S
Y
Q
K
F
R
R
F
----------
F
Q
-
T
A
C
D
V
P
E
L
Q
D
K
F
N
V
-------
D
E
Y
S
D
L
V
T
L
T
---------------
K
P
----
V
I
Y
I
S
I
G
E
I
I
N
-
T
H
T
L
L
L
-
D
H
Q
D
A
I
-------
A
P
E
H
N
D
P
I
H
E
L
L
D
D
L
G
E
V
PTIES-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
57.45
15%
-110
- C5 -
3QNQ
8
?
A:
[15-434]
-------------------------------------------------------------------------------------------
K
V
A
E
Q
R
H
L
L
A
I
R
D
G
L
V
L
T
M
P
F
L
I
--
I
G
------
S
I
F
L
I
I
S
T
L
P
I
P---
G
Y
S
E
-
F
M
A
S
------
L
-
F
G
K
N
W
N
V
A
L
-
G
Y
P
V
S
A
T
-
F
N
I
M
A
L
I
A
V
F
G
I
A
Y
--
R
L
G
E
Y
---
Y
K
V
D
A
L
A
S
G
A
L
S
L
V
T
F
L
L
A
T
PF
Q
V
A
Y
I
MPGTK
E
S
I
L
V
D
GVIP
A
A
L
M
-----------------------------
G
---
S
Q
G
L
F
V
A
M
I
I
A
I
I
S
T
E
I
Y
R
F
-
L
V
Q
K
KM
I
I
K
-
M
P
E
T
------
V
P
P
A
V
T
R
S
F
A
A
L
I
P
-
G
---------
F
I
V
V
T
V
V
W
I
I
-
R
-
L
I
F
E
H
T
T
F
G
S
I
H
N
V
V
G
K
L
--
L
Q
E
P
----
L
S
I
L
G
--
A
-
S
L
W
G
A
V
I
A
V
I
L
V
H
V
L
---------
W
A
C
-
G
I
H
-
G
A
T
I
V
G
G
V
M
S
P
I
W
L
S
L
---------
M
D
Q
N
R
I
A
F
Q
A
G
Q
-
D
V
P
NT
I
T
AQFFDL
W
---
I
Y
M
G
G
-----------------
S
G
------
A
T
L
-
A
L
V
V
G
M
L
L
----
F
-------------
A
R
----
S
Q
Q
L
K
S
L
G
--
R
L
S
I
-----
A
P
---
G
I
F
N
I
N
-
E
-
M
V
T
----
F
G
MPI
V
M
-
N
P
L
L
L
I
P
F
I
V
V
P
V
V
L
T
I
V
S
Y
F
A
M
E
W
G
L
----------
V
A
-
R
P
S
G
A
A
V
T
W
T
T
P
I
L
F
S
G
Y
L
G
S
G
G
K
I
S
G
V
I
L
Q
---------------
L
V
----
N
F
A
L
-
A
F
V
I
Y
L
P
F
L
K
I
W
D
-
K
Q
K
I
A
E
-------
E
K
G
E
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
39.79
38%
-28
- C5 -
2OZB
-
PRP31_HUMAN
B:
[128-178]
-------------------------------------------------------------------------------------------
K
H
R
I
Y
E
Y
V
E
S
R
M
S
F
I
A
P
N
L
S
I
I
I
--
G
A
------
S
---
T
A
A
K
I
M
G
----
V
A
G
G
-
L
T
N
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
39.52
38%
-33
- C5 -
3SIV
-
PRP31_HUMAN
B:
[201-252]
-------------------------------------------------------------------------------------------
K
H
R
I
Y
E
Y
V
E
S
R
M
S
F
I
A
P
N
L
S
I
I
I
--
G
A
------
S
---
T
A
A
K
I
M
G
----
V
A
G
G
-
L
T
N
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
39.43
38%
-29
- C5 -
3SIU
-
PRP31_HUMAN
B:
[122-174]
-------------------------------------------------------------------------------------------
K
H
R
I
Y
E
Y
V
E
S
R
M
S
F
I
A
P
N
L
S
I
I
I
--
G
A
------
S
---
T
A
A
K
I
M
G
----
V
A
G
G
-
L
T
N
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
39.13
40%
-68
- C5 -
2Z8X
-
?
A:
[176-229]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
E
A
F
G
N
L
L
N
D
V
V
A
F
-
A
K
A
N
--
G
L
S
G
K
---
D
V
L
V
S
---
G
H
S
L
G
G
--
L
-
A
V
-------------------------
N
-----------------------------
S
---
M
A
D
L
S
G
G
K
W
G
G
F
F
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
38.18
40%
-70
- C5 -
2ZJ6
-
?
A:
[176-229]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
E
A
F
G
N
L
L
N
D
V
V
A
F
-
A
K
A
N
--
G
L
S
G
K
---
D
V
L
V
S
---
G
H
S
L
G
G
--
L
-
A
V
-------------------------
N
-----------------------------
S
---
M
A
D
L
S
G
G
K
W
G
G
F
F
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
38.01
40%
-70
- C5 -
3A70
1
?
A:
[176-237]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
E
A
F
G
N
L
L
N
D
V
V
A
F
-
A
K
A
N
--
G
L
S
G
K
---
D
V
L
V
S
---
G
H
S
L
G
G
--
L
-
A
V
-------------------------
N
-----------------------------
S
---
M
A
D
L
S
G
G
K
W
G
G
F
F
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
38.00
40%
-67
- C5 -
2ZJ7
-
?
A:
[176-229]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
E
A
F
G
N
L
L
N
D
V
V
A
F
-
A
K
A
N
--
G
L
S
G
K
---
D
V
L
V
S
---
G
H
S
L
G
G
--
L
-
A
V
-------------------------
N
-----------------------------
S
---
M
A
D
L
S
G
G
K
W
G
G
F
F
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
37.39
40%
-68
- C5 -
2Z8Z
-
?
A:
[176-229]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
E
A
F
G
N
L
L
N
D
V
V
A
F
-
A
K
A
N
--
G
L
S
G
K
---
D
V
L
V
S
---
G
H
S
L
G
G
--
L
-
A
V
-------------------------
N
-----------------------------
S
---
M
A
D
L
S
G
G
K
W
G
G
F
F
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
36.94
40%
-67
- C5 -
2ZVD
-
?
A:
[176-237]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
E
A
F
G
N
L
L
N
D
V
V
A
F
-
A
K
A
N
--
G
L
S
G
K
---
D
V
L
V
S
---
G
H
S
L
G
G
--
L
-
A
V
-------------------------
N
-----------------------------
S
---
M
A
D
L
S
G
G
K
W
G
G
F
F
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
36.64
40%
-67
- C5 -
3A6Z
-
?
A:
[176-232]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
E
A
F
G
N
L
L
N
D
V
V
A
F
-
A
K
A
N
--
G
L
S
G
K
---
D
V
L
V
S
---
G
H
S
L
G
G
--
L
-
A
V
-------------------------
N
-----------------------------
S
---
M
A
D
L
S
G
G
K
W
G
G
F
F
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
29.65
36%
244
- C5 -
2QIY
-
UBP3_YEAST
C:
[21-45]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
P
-
L
F
I
N
T
T
-
E
A
E
F
A
A
-------
A
S
V
Q
R
Y
E
L
N
M
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
24.01
18%
42
- C5 -
2B6O
1
MIP_SHEEP
A:
[200-239]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
H
W
V
Y
W
V
G
P
---------------
V
I
----
G
A
G
L
-
G
S
L
L
Y
D
-
F
L
L
F
P
R
-
L
K
S
V
S
E
R
L
SILKG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
23.00
16%
36
- C5 -
1J4N
1
AQP1_BOVIN
A:
[210-249]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
H
W
I
F
W
V
G
P
---------------
F
I
----
G
A
A
L
-
A
V
L
I
Y
D
-
F
I
L
A
P
R
-
S
S
D
L
T
D
R
V
K
VW--
T
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
20.83
31%
688
- C5 -
2AFF
-
MK67I_HUMAN
B:
[246-258]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
S
Q
V
-------
A
E
L
N
D
D
D
K
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------