@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0685: (2016-03-17 )
VEITTIIGLVLAVIVIAGSFMIQNISLAMLFSAEALIVIILGTITAVMMAHPWSDVKVVPKLFKILFTKEKMPDKVDVLVQYKEYADEIRRSGVLALEDSVDEIEDPFMKRGMRLVVDGQSSPEFLRDVLEEEVASMEERHAAYAKIFASAGAYAPTLGVLGAAMGLIHAMGEMSNPDKLSEAIAAAFVCTIFGIFTGYVLWTPFANKLKVKSQKEVHLRYMMIEGVVALQERNAPRVVEERLLSFLSPKEKDVLRNGKGKKTREVEEIERGQASQETAGGTR
Atome Classification :
(20 SA)
-----------------------------------------------------------------------.........10........20..--......30......---.----------.40........50........60........70......----..80.........90.--------.......100.......110.........120.......130.......140.......150....----------------...160......-.170.......180.......190.......200...-.------...210.......220.......230.----------------......240....------...250.......260---..--------.....270.......280.----------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------V
E
I
T
T
I
I
G
L
V
L
A
V
I
V
I
A
G
S
F
M
I
Q
--N
I
S
L
A
M
L
FSA
E
A
L
I
---
V
----------
I
I
L
G
T
I
T
A
V
M
MAHPWS
D
V
K
V
V
P
K
L
F
K
I
L
F
TKEKMPD
K
V
D
----
V
L
V
-
Q
Y
K
E
Y
A
D
E
I
R
RS--------
G
V
L
ALED
S
V
D
E
I
E
D
P
F
M
K--RG
M
R
L
V
VDGQS
S
P
E
F
L
R
D
V
L
E
E
E
V
A
S
M
E
E
R
H
A
A
Y
A
K
I
F
ASAGAYA
P
----------------
T
L
G
V
L
G
A
A
M
G
L
I
-
H
A
M
GEMS
N
P
D
K
L
S
E
A
I
A
A
A
F
V
C
T
I
F
G
I
F
T
G
Y
V
L
WTPF-A------N
K
L
K
VKSQ
K
E
V
H
L
R
Y
M
M
I
E
G
V
V
A
L
QER----------------NA
P
R
V
V
E
E
R
L
L
S
F
------LSP
K
E
K
D
V
L
RNGKGKK---
T
R
--------
E
V
E
E
I
E
RGQASQETAGGTR----------------------------
54
Fugue
89.11
19%
-86
- C4 -
4RDQ
9
?
A:
[1-366]
-----------------------------------------TVTYTNRVADARLG
T
F
S
Q
L
L
L
QWKGS
I
Y
K
L
L
Y
S
E
F
L
I
F
I
S
L
Y
F
A
I
S
L
V
Y
R
L
I
L
--
S
E
S
Q
R
L
M
F
E
K
L
A
L
Y
---
C
N
S
Y
AE
L
I
P
V
S
F
V
L
G
F
Y
V
S
L
V
V
S
R
W
W
A
Q
Y
E
S
I
P
W
P
D
R
I
M
N
L
V
S
C
N
V
D
G
E
D
-----------
E
Y
G
R
L
L
R
R
T
L
M
R
Y
S
N
L
C
S
V
L
I
L
R
S
V
S
T
A
V
Y
K
R
F
-
P
--
S
M
E
H
V
V
R
A
G
L
M
T
P
E
E
H
K
K
F
--
E
S
L
N
S
P
H
N
K
F
W
I
P
C
V
W
F
S
N
L
A
V
K
A
R
N
E
GRIRD
S
V
L
L
Q
G
I
L
N
E
L
N
T
L
R
S
Q
C
G
R
L
-
Y
G
Y
D
W
I
S
I
P
L
V
Y
T
Q
V
V
T
V
A
V
Y
S
F
F
L
A
C
L
I
G
R
Q
F
L
D
P
E
-
K
AYPG--
H
E
L
D
L
F
V
P
V
F
T
F
L
Q
F
F
F
Y
A
G
W
L
K
V
A
E
Q
L
I
NPFGEDDDDFE
T
N
W
L
I
D
R
N
L
Q
V
S
L
M
A
V
D
E
MHQD
L
P
I
L
E
K
D
L
Y
W
N
E
P
D
P
Q
P
P
Y
T
A
--------
A
T
A
E
Y
K
R
P
S
F
L
G
S
T
F
D
I
S
-----------------------------
48
Fugue
68.16
15%
-45
- C6 -
4MND
4
DIPPS_ARCFU
A:
[40-457]
L
M
K
A
V
I
L
A
A
G
LGGGVPKPLVRVGGCE
I
I
L
R
T
M
K
L
L
S
PHVS
E
F
I
I
V
A
S
RY
A
D
D
I
D
A
F
L
KDKGFN
Y
K
I
V
R
H
DR
P
E
K
G
N
G
Y
S
L
L
V
A
K
N
H
V
E
D
R
F
I
L
T
M
G
D
H
V
Y
S
Q
Q
F
I
E
K
A
V
R
GE
G
V
----------
I
A
D
R
E
P
R
F
V
D
I
G
E
A
-
T
K
I
R
V
E
D
G
R
V
A
K
I
G
K
D
L
R
E
F
D
C
V
D
TG
F
F
V
L
D
D
S
I
F
E
H
A
E
K
L
R
D
R
--------
E
E
I
P
L
S
E
I
V
K
L
A
R
L
P
V
T
Y
V
D
G
E
L
W
M
D
V
D
T
K
E
D
V
R
R
A
N
R
A
L
V
S
A
A
V
G
D
G
F
I
S
R
K
I
N
R
K
I
S
T
R
I
S
A
A
I
----------------
V
N
K
V
N
P
N
Q
M
T
L
I
S
F
L
V
G
A
F
S
A
L
A
S
F
F
S
I
P
L
A
G
L
L
Y
Q
F
S
S
I
L
D
G
C
D
G
E
I
A
R
-
A
S
LKMS
K
K
G
G
Y
V
D
S
I
L
D
R
F
V
D
F
L
F
L
A
I
I
A
L
L
Y
P
K
----------------
T
A
T
V
A
M
F
A
I
F
G
S
V
------
M
V
S
Y
T
S
E
K
Y
K
A
E
F
G
E
S
---
I
R
VLNYIPGK
R
D
E
R
I
F
L
I
M
I
F
C
L
L
S
A
I
S
L
Q
W
I
F
W
M
F
L
F
V
A
A
I
S
L
T
R
V
V
V
T
L
L
A
V
L
V
S
5
PsiBlast_PDB
59.51
36%
-8
- C6 -
1XAC
-
LEU3_THET8
A:
[269-322]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
E
P
V
H
G
S
A
P
D
I
-
A
G
K
G
I
A
N
P
----------------
T
A
A
I
L
S
A
A
M
M
L
E
-
H
A
F
G
L
V
E
L
A
R
K
V
E
D
A
V
A
K
A
L
L
E
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
59.04
39%
10
- C6 -
1XAA
-
LEU3_THET8
A:
[280-322]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
K
G
I
A
N
P
----------------
T
A
A
I
L
S
A
A
M
M
L
E
-
H
A
F
G
L
V
E
L
A
R
K
V
E
D
A
V
A
K
A
L
L
E
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------
35
PsiBlast_CBE
58.68
39%
18
- C6 -
2Y3Z
2
LEU3_THET8
A:
[283-325]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
K
G
I
A
N
P
----------------
T
A
A
I
L
S
A
A
M
M
L
E
-
H
A
F
G
L
V
E
L
A
R
K
V
E
D
A
V
A
K
A
L
L
E
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
58.63
39%
19
- C6 -
1DR0
-
LEU3_THET8
A:
[280-322]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
K
G
I
A
N
P
----------------
T
A
A
I
L
S
A
A
M
M
L
E
-
H
A
F
G
L
V
E
L
A
R
K
V
E
D
A
V
A
K
A
L
L
E
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
58.33
39%
26
- C6 -
2ZTW
1
LEU3_THET8
A:
[280-322]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
K
G
I
A
N
P
----------------
T
A
A
I
L
S
A
A
M
M
L
E
-
H
A
F
G
L
V
E
L
A
R
K
V
E
D
A
V
A
K
A
L
L
E
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
58.26
39%
10
- C6 -
1OSI
-
LEU3_THET8
A:
[280-322]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
K
G
I
A
N
P
----------------
T
A
A
I
L
S
A
A
M
M
L
E
-
H
A
F
G
L
V
E
L
A
R
K
V
E
D
A
V
A
K
A
L
L
E
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------
22
PsiBlast_CBE
58.14
39%
22
- C6 -
4WUO
3
LEU3_THET8
A:
[283-325]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
K
G
I
A
N
P
----------------
T
A
A
I
L
S
A
A
M
M
L
E
-
H
A
F
G
L
V
E
L
A
R
K
V
E
D
A
V
A
K
A
L
L
E
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------
21
PsiBlast_CBE
58.05
39%
17
- C6 -
4WUO
2
LEU3_THET8
B:
[283-325]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
K
G
I
A
N
P
----------------
T
A
A
I
L
S
A
A
M
M
L
E
-
H
A
F
G
L
V
E
L
A
R
K
V
E
D
A
V
A
K
A
L
L
E
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------
26
PsiBlast_CBE
57.94
39%
21
- C6 -
4F7I
5
LEU3_THET8
A:
[283-325]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
K
G
I
A
N
P
----------------
T
A
A
I
L
S
A
A
M
M
L
E
-
H
A
F
G
L
V
E
L
A
R
K
V
E
D
A
V
A
K
A
L
L
E
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
57.91
39%
9
- C6 -
1WAL
-
LEU3_THETH
A:
[280-322]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
K
G
I
A
N
P
----------------
T
A
A
I
L
S
A
A
M
M
L
E
-
H
A
F
G
L
V
E
L
A
R
K
V
E
D
A
V
A
K
A
L
L
E
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
57.89
39%
14
- C6 -
1DR8
-
LEU3_THET8
A:
[280-322]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
K
G
I
A
N
P
----------------
T
A
A
I
L
S
A
A
M
M
L
E
-
H
A
F
G
L
V
E
L
A
R
K
V
E
D
A
V
A
K
A
L
L
E
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------
50
Fugue
57.81
14%
-107
- C7 -
4DFR
2
DYR_ECOLI
A:
[1-159]
-------------------------------------------------------------------------------
M
I
S
L
I
A
A
L
A
V
D
R
V
I
G
--
M
E
N
------------------------------------
A
M
P
W
-
N
L
P
A
D
L
A
W
F
K
R
N
T
L
-------
D
K
----
P
V
I
-
M
G
R
H
T
W
E
S
I
G
-----------------------
R
P
L
P
G
--
R
-
K
N
I
I
L
S
S
Q
P
--
G
T
D
D
R
V
--
T
W
V
K
S
V
D
E
A
I
A
A
C
G
D
--
V
P
----------------------
E
I
M
V
I
G
G
G
R
V
Y
E
-
Q
F
L
P
K
----------
A
Q
K
L
Y
L
T
H
I
D
A
E
V
E
G
D
T
H
F
P
D
Y
E
P
------
D
D
W
E
S
V
F
S
-----------------------------------------------------------
E
F
H
D
A
D
A
Q
N
S
H
---
S
Y
--------
C
F
K
I
L
E
R
R
---------------------------------------
10
PsiBlast_PDB
57.73
39%
17
- C6 -
1XAB
-
LEU3_THET8
A:
[280-322]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
K
G
I
A
N
P
----------------
T
A
A
I
L
S
A
A
M
M
L
E
-
H
A
F
G
L
V
E
L
A
R
K
V
E
D
A
V
A
K
A
L
L
E
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
57.46
39%
10
- C6 -
1GC8
-
LEU3_THET8
A:
[1280-1322]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
K
G
I
A
N
P
----------------
T
A
A
I
L
S
A
A
M
M
L
E
-
H
A
F
G
L
V
E
L
A
R
K
V
E
D
A
V
A
K
A
L
L
E
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
57.39
36%
-3
- C6 -
1XAD
-
LEU3_THET8
A:
[269-322]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
E
P
V
H
G
S
A
P
D
I
-
A
G
K
G
I
A
N
P
----------------
T
A
A
I
L
S
A
A
M
M
L
E
-
H
A
F
G
L
V
E
L
A
R
K
V
E
D
A
V
A
K
A
L
L
E
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------
30
PsiBlast_CBE
57.29
39%
18
- C6 -
2Y42
1
LEU3_THET8
A:
[283-325]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
K
G
I
A
N
P
----------------
T
A
A
I
L
S
A
A
M
M
L
E
-
H
A
F
G
L
V
E
L
A
R
K
V
E
D
A
V
A
K
A
L
L
E
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
57.21
39%
17
- C6 -
1IDM
-
LEU3_THET8
A:
[278-320]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
K
G
I
A
N
P
----------------
T
A
A
I
L
S
A
A
M
M
L
E
-
H
A
F
G
L
V
E
L
A
R
K
V
E
D
A
V
A
K
A
L
L
E
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------
29
PsiBlast_CBE
57.12
39%
18
- C6 -
2Y42
1
LEU3_THET8
B:
[283-325]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
K
G
I
A
N
P
----------------
T
A
A
I
L
S
A
A
M
M
L
E
-
H
A
F
G
L
V
E
L
A
R
K
V
E
D
A
V
A
K
A
L
L
E
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------