@TOME V2.3
(Nov 2016)

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Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
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Values color: [ Good | Correct | Middling | Bad ]Sequence color : MutatedHelixStrandConserved

Query sequence : Lmo1822: (2016-03-29 )
MKKQKTVRAIALELIIKIENNQSYSHLLINDALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLAPFLNKEPDNWVKNLLRMSVYQLTYLDKVPEHAILNEAGDIAKNMGHQGVTKFVNGVLRNVIRKGVPSIDAIKDPVQKIAVETSLPEWLAKRWADQYGIEQLREIGLAFLVAPHQSIRVNQTEIPTEQLIKELNDQGITVTRNEFIEEALLVEKGSVAETKAYKDGKCSIQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDEAAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIHKLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVLRAFLEKHPDFTLEPVVLPEKLAQIKKDDFIQLLPTDIGSDGFFVSSLRKVKS

Atome Classification :

(20 SA) -.........10.......-.20..-.----.....30.......-.-40........50........60...-----.....----70.---.......80........90........100-.........110----.......120.....-..130.......140.......150.......160.......170...-....--180.......190-........200.-------------...------------------...210.....------.-.--220.......-230.......240.......250.......260.......270.......280.......290......------.300--------........310-.....--..320..--......330.--......340.......350--.......360.......370.......380.......390.......400....-----...--.--410----.---.-.--....-..---------420--------.----.......430........440..--------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome) (Ident) (Tito) (Num) (Ligand) (Uniprot) -MKKQKTVRAIALELIIKI-ENNQS-Y----SHLLINDALKKQKL-N-PLDKGLLTELVYGTTQRKITLDYYL-----APFLN----KEP---DNWVKNLLRMSVYQLTYLDKVPEHAILN---EAGDIAKNMGHQ----GVTKFVNGVLRNVIR-KGVPSIDAIKDPVQKIAVETSLPEWLAKRWADQYGIEQLREIGLAFLV-APHQ--SIRVNQTEIPTE--QLIKELNDQGIT-------------VTR------------------NEFIEEALLVE------K-G--SVAETKAYKD-GKCSIQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDEAAKRL------QLL---------NIRTAHLDART-ASTMF--EPET-FD--RILVDAPCSG--FGVLRRKPDIKYAKTEKDI--HKLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVLRAFLEKHPD-FTLE-----PVV--L--P------E---K-L--AQIK-KD---------DF---------I----QLLPTDIGS-DGFFVSSLRKVKS--------------------------------------------------------------------------------------------------------------------------------------------------------------
2 PsiBlast_PDB 89.6232% -72 - C1 -1SQG - RSMB_ECOLI A:[5-428] -----RNLRSMAAQAVEQVVEQGQS-L----SNIL---PPLQQKV-S-DKDKALLQELCFGVLRTLSQLDWLINKLMARPMTG----KQR---T--VHYLIMVGLYQLLY-TRIPPHAALA---ETVEGAIAIKRP----QLKGLINGVLRQFQR-QQ----EELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQ-RPPM--WLRINRTHHSRD--SWLALLDEAGMK-------------GFP------------------HADYPDAVRLET-----P-A--PVHALPGFED-GWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILE-VAPEAQVVAVDIDEQRLSRVYDNLKRL------GM----------KATVKQGDGRY-PSQWC--GEQQ-FD--RILLDAPCSA--TGVIRRHPDIKWLRRDRDI--PELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTAD-AELC-----ETG--T--P------E---Q-P--GK------------------------------QNLPGAEEG-DGFFYAKLIK-----------------------------------------------------------------------------------------------------------------------------------------------------------------
51 Fugue 89.0531% -75 - C1 -1SQG - RSMB_ECOLI A:[5-428] -----RNLRSMAAQAVEQV-VEQGQ-S----LSNILPPLQQK--V-S-DKDKALLQELCFGVLRTLSQLDWLI-----NKLMA----RPMTGKQRTVHYLIMVGLYQLLYTR-IPPHAALA---ETVEGAIAIKRP----QLKGLINGVLRQFQR-QQEELLAEFNAS----DARYLHPSWLLKRLQKAYP-EQWQSIVEANNQ-RPPM--WLRINRTHHSRD--SWLALLDEAGMK-------------GFP------------------HADYPDAVRLE------TPA--PVHALPGFED-GWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDIDEQRLSRVYDNLKRL------GM----------KATVKQGDGRY-PSQWC--GEQQ-FD--RILLDAPCSA--TGVIRRHPDIKWLRRDRDI--PELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTAD-AELC-----ETG--T--P------E---Q-P--G--------------------------K----QNLPGAEEG-DGFFYAKLIK-----------------------------------------------------------------------------------------------------------------------------------------------------------------
27 HHSearch 89.0331% -74 - C1 -1SQG - RSMB_ECOLI A:[5-428] -----RNLRSMAAQAVEQV-VEQGQ-S----LSNILPPLQQ--KV-S-DKDKALLQELCFGVLRTLSQLDWLI-----NKLMARPM-TGK---QRTVHYLIMVGLYQLLYT-RIPPHAALA---ETVEGAIAIKRP----QLKGLINGVLRQFQR-QQEELL----AEFNASDARYLHPSWLLKRLQKAYPE-QWQSIVEANNQ-RPPM--WLRINRTHHSRD--SWLALLDEAGMK-------------GFP------------------HADYPDAVRLE------T-PA-PVHALPGFED-GWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRL------GMK----------ATVKQGDGRY-PSQWC--GEQQ-FD--RILLDAPCSA--TGVIRRHPDIKWLRRDRDI--PELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTAD-AELC-----ETG-----------------------TP-EQ---------PG---------K----QNLPGAEEG-DGFFYAKLIK-----------------------------------------------------------------------------------------------------------------------------------------------------------------
1 PsiBlast_PDB 88.6032% -71 - C1 -1SQF RSMB_ECOLI A:[5-428] -----RNLRSMAAQAVEQVVEQGQS-L----SNIL---PPLQQKV-S-DKDKALLQELCFGVLRTLSQLDWLINKLMARPMTG----KQR---T--VHYLIMVGLYQLLY-TRIPPHAALA---ETVEGAIAIKRP----QLKGLINGVLRQFQR-QQ----EELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQ-RPPM--WLRINRTHHSRD--SWLALLDEAGMK-------------GFP------------------HADYPDAVRLET-----P-A--PVHALPGFED-GWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILE-VAPEAQVVAVDIDEQRLSRVYDNLKRL------GM----------KATVKQGDGRY-PSQWC--GEQQ-FD--RILLDAPCSA--TGVIRRHPDIKWLRRDRDI--PELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTAD-AELC-----ETG--T--P------E---Q-P--GK------------------------------QNLPGAEEG-DGFFYAKLIK-----------------------------------------------------------------------------------------------------------------------------------------------------------------
28 HHSearch 82.1427% -68 - C1 -2YXL ? A:[6-448] ---KKLSIPPKGIRAIIEA-IRLGE-IIKPSQYAKRE-AFKKHDV-EEAWLNRVLTMIFYDIMKKQGLIDKVI-----KEIVGVTP-LIL---DPWLRAALRVAVDIALFHD-PSSQTIKN---LRWKASD-FISSRTHPYVGMYFWDLLDKIFE-YKP----NPKNELEELEWKYLAPSWLIERVKGILGDE-TEDFFRSVNKRHEWI--SIRVNTLKANVE--EVIGELEEDGVE-------------VVR------------------SERVPTILKIK------G-PY-NFDTSSAFNE-GKIIVQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRM------GIK---------IVKPLVKDARK-APEII--GEEV-AD--KVLLDAPCTS--SGTIGKNPELRWRLREDKI--NEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHPE-FKLV-----PLK--S--P------Y---D-P----GF-LE---------GT---------M----RAWPHRHST-IGFFYALLEK-----------------------------------------------------------------------------------------------------------------------------------------------------------------
50 Fugue 80.9726% -57 - C1 -2YXL ? A:[6-448] KKLSIPPKGIRAIIEAIRL-GEIIK-P----SQYAKREAFKKHDVEE-AWLNRVLTMIFYDIMKKQGLIDKVI-----KEIVGVTP-LIL---DPWLRAALRVAVDIALFHD--PSSQTIK---NLRWKASDFISS----RTHPYVGMYFWDLLD-KIFEYKPNPKNELEELEWKYLAPSWLIERVKGILGDETEDFFRSVNKR-HEWI--SIRVNTLKANVE--EVIGELEEDGVE-------------VVR------------------SERVPTILKIK------GPY--NFDTSSAFNE-GKIIVQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRM------GIK---------IVKPLVKDARK-APEII--GEEV-AD--KVLLDAPCTS--SGTIGKNPELRWRLREDKI--NEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHPE-FKLV-----P----L--K------S---P-Y--DPGF-LE---------GT---------M----RAWPHRHST-IGFFYALLEK-----------------------------------------------------------------------------------------------------------------------------------------------------------------
3 PsiBlast_PDB 78.6629% -70 - C1 -2YXL ? A:[52-448] -----------------------------------------------------VLTMIFYDIMKKQGLIDKVI-----KEIVG----VTPLILDPWLRAALRVAVDIALFHDP-SSQTIKNLRWKASDFISSRTHP----YVGMYFWDLLDKIFEYKPNP-----KNELEELEWKYLAPSWLIERVKGILGDET--EDFFRSVN-KRHEWISIRVNTLKANVE--EVIGELEEDGVE-------------VVR------------------SERVPTILKI-------K-GPYNFDTSSAFNE-GKIIVQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRM------GIK---------IVKPLVKDARK-APEII--GEEV-AD--KVLLDAPCTS--SGTIGKNPELRWRLREDKI--NEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHPE-FKLV-----PLK--S--P------Y---D-P--GFL---E---------GT---------M----RAWPHRHST-IGFFYALLEK-----------------------------------------------------------------------------------------------------------------------------------------------------------------
8 PsiBlast_PDB 64.7930% -64 - C1 -3M6V RSMF_THET8 A:[33-299] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GLRVNTLKLPPEAFQRISPWPLRPIP-------------WCQ------------------EGFY----YPE------E-A--RPGPHPFFYA-GLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERW------GA----------PLAVTQAPPRA-LAEAF--G-TY-FH--RVLLDAPCSG--EGMFRKDREAARHWGPSAP--KRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLKAHPE-FRLEDARLHPLF--A--PGVPEWGE---G-N--PELL-KT--------------------A----RLWPHRLEG-EGHFLARFRK-----------------------------------------------------------------------------------------------------------------------------------------------------------------
34 HHSearch 64.0934% -71 - C1 -3AJD TRM4_METJA A:[9-274] --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KMQ--FIRVNTLKINPE--VLKKRLENKGVV-------------LEK------------------T-FLDYAFEVK------K-SPFSIGSTPEYLF-GYYMPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRM------GVL---------NTIIINADMRK-YKDYLLKNEIF-FD--KILLDAPCS------------------EEDI--KYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQKRND-VELI-----IIK--A--N------EFKGI-NI-KEGY-IK---------GT---------L----RVFPP---N-EPFFIAKLRKI----------------------------------------------------------------------------------------------------------------------------------------------------------------
7 PsiBlast_PDB 61.9230% -70 - C1 -3M6U RSMF_THET8 A:[33-299] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GLRVNTLKLPPEAFQRISPWPLRPIP-------------WCQ------------------EGFY----YPE------E-A--RPGPHPFFYA-GLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERW------GA----------PLAVTQAPPRA-LAEAF--G-TY-FH--RVLLDA-----------------RHWGP--P--KRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLKAHPE-FRLEDARLHPLF--A--PGVPEWGE---G-N--PELL-KT--------------------A----RLWPHRLEG-EGHFLARFRK-----------------------------------------------------------------------------------------------------------------------------------------------------------------
5 PsiBlast_PDB 61.0933% -65 - C1 -3AJD TRM4_METJA A:[11-274] ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q--FIRVNTLKINPE--VLKKRLENKGVV-------------LEK------------------T-FLDYAFEVK------K-SPFSIGSTPEYLF-GYYMPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRM------GVL---------NTIIINADMRKYKDYLL--KNEIFFD--KILLDAPCS------------------EEDI--KYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQKRND-VELI-----IIK--A--N------E---F-K--GINI-KE---------GY---------IKGTLRVFPPN----EPFFIAKLRKI----------------------------------------------------------------------------------------------------------------------------------------------------------------
11 PsiBlast_PDB 61.0427% -69 - C1 -2B9E NSUN5_HUMAN A:[14-301] --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VRVNTLKTCSD--DVVDYFKRQGFSYQGRASSLDDLRALKG------------------KHFLLDPLMPELLVFPAQ-T--DLHEHPLYRA-GHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARA------GVS---------CCELAEEDFLA-VSPS---DPRY-HEVHYILLDPSCSG--------------------VRLHALAGFQQRALCHALTFPSLQ-RLVYSTCSLCQEENEDVVRDALQQNPGAFRLA-----PALPAW--P------H---RGL--STFPGAE---------HC---------L----RASPETTLS-SGFFVAVIERV----------------------------------------------------------------------------------------------------------------------------------------------------------------
33 HHSearch 60.3328% -62 - C1 -2B9E NSUN5_HUMAN A:[9-301] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QLPR--FVRVNTLKTCSD--DVVDYFKRQGFS-------------YQGRASSLDDLRALKGKHFLLDPLMPELLVFP------A-QT-DLHEHPLYRA-GHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARA------GVS---------CCELAEEDFLA-VSPSDP-RYHE-VH--YILLDPSCSG------------------VRL--HALAGFQQRALCHALTF-PSLQRLVYSTCSLCQEENEDVVRDALQQNPGAFRLA-----PAL--PAWP------H---R-GLSTFPG-AE---------HC---------L----RASPETTLS-SGFFVAVIERV----------------------------------------------------------------------------------------------------------------------------------------------------------------
21 PsiBlast_CBE 60.1133% -61 - C1 -3A4T TRM4_METJA B:[11-274] ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q--FIRVNTLKINPE--VLKKRLENKGVV-------------LEK------------------T-FLDYAFEVK------K-SPFSIGSTPEYLF-GYYMPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRM------GVL---------NTIIINADMRKYKDYLL--KNEIFFD--KILLDAPCSG--N----------------DI--KYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQKRND-VELI-----IIK--A--N------E---F-K--GINI-KE---------GY---------IKGTLRVFPPN----EPFFIAKLRKI----------------------------------------------------------------------------------------------------------------------------------------------------------------
53 Fugue 56.9920% -59 - C1 -4FP9 NSUN4_HUMAN A:[15-360] -----------PAVRLALQ-NFDMT-Y----SVQF------GDLW-P-SIRVSLLSEQKY------------------GALVN----NFA---A-------------------------------WDHVSAKLEQL----SAKDFVNEAISHWEL-QPSPASWACSPNLR------------------------------CFTF-DRGD--ISRFPPARPGSL--GV-----------------------------------------------------------------------------MEYYLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQ-TGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGN---------QVRVTSWDGRK-WGEL---EGDT-YD--RVLVDVPCTTDRHSLHEEENNIFKRSRKKER--QILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQGAIELLAN-QYSI-----QVQ--VEDL------T---H-F--RRVF-MD---------TFCFFSSCQVGE----LVIPNLMANFGPMYFCKMRRLT---------------------------------------------------------------------------------------------------------------------------------------------------------------
56 Fugue 47.3029% 30 - C1 -3M6W RSMF_THET8 A:[4-460] ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LPKAFLSRMAELLGEEFPAFLKALTEG-KRTY--GLRVNTLKLPPE--AFQRISPWPLRP-------------I---------------------PWCQEGFYYP------E-E--ARPGPHPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERW------GAP---------LAVTQAPPRAL-AEAF----GTY-FH--RVLLDAPCSG--EGMFRKDREAARHWGPSAP--KRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLKAHPE-FRLE-----DAR--L--H------P---L-F--APGV-PEWGEGNPELLKT---------A----RLWPHRLEG-EGHFLARFRKEGGAWSTPRLERPSPLSQEALRAFRGFLEEAGLTLEGPVLDRAGHLYLLPEGLPTLLGLKAPAPGLYLGKVQKGRFLPARALALAFGATLPWPEGLPRLALTPEDPRALAFATGEGVAWEGEDHPLALVVLKTAAGEFPLDFGKAKRGVLRPVGVGLRSHH
13 PsiBlast_PDB 46.0329% -55 - C1 -4FZV NSUN4_HUMAN A:[132-301] --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LMDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQ----TGCCRNLAANDLSPSRIARLQKIL------HSYVPEEIRDGNQVRVTSWDGRK-WGEL---EGDT-YD--RVLVDVPCTTDRHSLHEEENNIFKRSRKKER--QILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQGAIE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12 PsiBlast_PDB 46.0129% -58 - C1 -4FP9 NSUN4_HUMAN A:[133-302] --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LMDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQ----TGCCRNLAANDLSPSRIARLQKIL------HSYVPEEIRDGNQVRVTSWDGRK-WGEL---EGDT-YD--RVLVDVPCTTDRHSLHEEENNIFKRSRKKER--QILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQGAIE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37 HHSearch 45.2520% -78 - C1 -1TZV - NUSB_THEMA A:[2-136] -KTPRRRMRLAVFKALFQH-EFRRDED----LEQILEEILD-ETY-D-KKAKEDARRYIRGIKENLSMIDDLI-----SRYLEKWSLNRL---SVVDRNVLRLATYELLFEKDIPIEVTID---EAIEIAKRYGTE----NSGKFVNGILDRIAK-EHAP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35 HHSearch 44.2926% -73 - C1 -3D3B NUSB_ECOLI A:[5-137] -PAARRRARECAVQALYSW-QLSQN-D----IADVEYQFLAEQDV-K-DVDVLYFRELLAGVATNTAYLDGLM-----KPYLSRLL-EEL---GQVEKAVLRIALYELSKRSDVPYKVAIN---EAIELAKSFGAE----DSHKFVNGVLDKAAP-VIR-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------