@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo2279: (2016-04-02 )
MEFGKELLVYMTFLVVVTPVFVQAIKKTELVPPKWLPTVSILIGAILGALATFLDGSGSLATMIWAGALAGAGGTGLFEQFTNRSKKYGEDDK
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.......----.--------20........30--.....------------------------....40-.---......--.----50.----.....--...60.----------.......70.........80........90..------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME
F
G
K
E
L
L
V
Y
M
T
F
L
V
V
V
T
----
P
--------
V
F
V
Q
A
I
K
KTEL---VPPKW------------------------
L
P
T
V
S
I
-
L
---
I
G
A
I
L
G
--
A
----
L
-
A
----
T
F
LDG--SG
S
L
A
T
----------
M
I
W
A
G
A
LA-GAGGT
G
L
F
E
Q
F
T
N
R
S
KKYGEDDK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
78.55
20%
-164
- C4 -
1Q77
-
Y178_AQUAE
A:
[1-138]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SNAM
K
V
L
L
V
L
T
DAYSDC
E
K
A
I
T
Y
A
V
N
F
S
E
K
L
G
A
E
L
D
I
L
A
V
L
E
----
D
--------
V
Y
N
L
E
R
A
N
V
T
F
G
L
P
F
P
P
E
I
K
E
E
S
K
K
R
I
E
R
R
L
R
E
V
W
E
K
L
TGSTE
I
P
G
V
E
Y
-
R
---
I
G
P
L
S
E
--
E
----
V
-
K
----
K
F
V
E
G
--
K
G
-
Y
E
L
----------
V
V
W
A
C
-
Y
P
-
S
A
Y
L
C
K
V
I
D
G
L
N
L
A
S
L
I
V
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
Fugue
77.52
20%
-119
- C4 -
3EUH
-
MUKE_ECOLI
C:
[10-215]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MP
V
K
L
A
Q
A
L
A
NPL
F
P
A
L
D
S
A
L
R
S
G
R
H
I
G
LDE
L
D
N
H
A
F
L
M
D
F
Q
E
Y
L
E
E
F
Y
A
R
Y
N
V
E
L
I
R
A
----
P
E
G
------
F
F
Y
L
R
P
R
S
T
T
L
---
I
P
R
S
V
------------------------
L
S
E
L
D
M
-
M
---
V
G
K
I
L
C
--
Y
----
L
-
Y
L
SPE
R
L
A
N
E
--
G
I
F
T
Q
Q
----------
E
L
Y
D
E
L
L
T
-
L
A
D
E
A
K
L
L
K
L
V
N
N
R
S
T
G
S
D
V
D
R
Q
K
L
Q
E
K
V
R
S
S
L
N
R
L
R
R
L
GM
V
W
F
M
GHDSS
K
F
R
I
T
ESVFRFGADVRAGDD
P
R
E
A
Q
R
R
L
I
R
D
GE
A
M
P
I
E
N------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
73.14
20%
-134
- C5 -
4WZR
1
K0020_HUMAN
A:
[9-524]
N
Y
D
I
V
V
R
A
K
Q
M
W
E
I
L
R
RKDCD
K
E
K
R
V
K
L
M
S
D
L
Q
K
L
I
QGK
I
K
T
I
A
F
AHDS
T
R
V
I
Q
C
Y
I
Q
Y
GN
E
E
Q
R
K
Q
A
F
E
E
L
RDD
L
V
E
L
S
KAKYS
R
N
I
V
K
K
F
L
M
YGS
K
P
Q
I
A
E
I
I
R
S
F
KGH
V
R
K
M
L
R
H
A
E
A
S
A
I
V
E
Y
A
Y
N
DKAI
L
E
Q
R
N
M
L
T
EELYG
N
T
F
Q
L
Y
KSADHPT
L
D
K
V
L
E
L
QPEK
L
E
L
I
M
D
E
M
K
Q
I
L
T
P
M
A
Q
K
E
AVIKH
S
L
V
H
K
V
F
L
D
F
F
T
Y
AP
P
K
L
R
S
E
M
I
E
A
I
R
EAVVYLAHT
H
D
G
A
R
V
A
M
H
C
L
W
H
GT
P
K
D
R
K
V
I
V
K
T
M
KTY
V
E
K
V
A
N
GQY
S
H
L
V
L
L
A
A
F
D
CIDD
T
K
L
V
K
Q
I
I
I
S
E
I
I
S
S
L
P
S
I
V
N
D
K
Y
G
R
K
V
L
L
Y
L
L
SPRDPAHTV
R
E
I
I
E
V
L
Q
K
GDGNAHSKKD
T
E
V
R
R
R
E
L
L
E
S
I
S
P
A
L
L
S
Y
L
Q
E
H
A
Q
E
V
V
L
D
K
S
A
C
V
L
V
S
----
D
--------
I
L
G
S
A
T
G
--------------------------------------
D
V
Q
P
-
T
---
M
N
A
I
A
S
--
L
----
A
-
A
----
T
G
L
H
P
--
G
G
K
D
G
E
----------
L
---
H
I
A
E
-
H
P
A
G
H
L
V
L
K
W
L
I
E
Q
D
K
K
M
K
E
N
G
R
EGC
F
A
K
T
L
V
E
H
V
G
M
K
N
L
K
S
W
A
S
V
N
R
G
A
I
I
L
S
S
L
L
Q
SCD
L
E
V
A
N
K
V
K
A
A
L
KSLIPTLES
K
G
I
E
I
L
L
E
K
L----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
68.08
25%
-112
- C5 -
1Z4H
-
TORI_ECOLI
A:
[1-66]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQ
H
E
L
Q
P
D
S
L
V
D
L
K
F
I
M
A
D
T
GFG
K
T
--------
F
I
Y
D
R
I
K
S
G
D
L
-----
P
K
---------------------------------------------------
A
----
K
V
I
H
G
--
R
A
---------------
R
W
L
---------
Y
R
D
H
C
E
F
K
N
K
L
L
S
R
A
N
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
Fugue
64.93
18%
-83
- C4 -
3VWA
-
CEX1_YEAST
A:
[1-540]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PLHMSISNFQFP
Y
T
I
E
ETAITETAL
W
Q
C
F
D
G
T
R
K
ADSL
P
V
T
V
F
K
A
KRSPEN
E
S
L
I
L
N
A
V
H
K
S
K
I
LKIPGLCTVL
E
T
F
D
SDPQS
T
F
I
V
T
E
R
V
V
P
FPWDN
L
G
S
L
S
Q
N
K
F
G
V
E
L
G
I
S
Q
L
L
A
T
L
G
F
L
K
NFVLGTLSKDS
V
F
I
N
IKG
E
W
V
L
F
G
LELCSSKEGLS
A
F
E
F
A
S
R
A
R
S
Y
Y
N
I
I
-------------------------
G
S
Q
---
L
P
C
E
D
------------------------
P
N
T
I
D
S
M
G
---
L
G
L
L
I
K
--
S
----
L
M
A
----
P
--------
S
C
L
P
----------
K
D
W
I
V
N
V
N
M
I
S
D
G
K
I
T
I
E
N
F
R
K
R
L
E
N
T
E
T
W
R
S
N
P
L
I
N
F
Y
Q
E
L
R
E
LHIKD
P
Q
G
K
L
V
V
M
S
N
L
E
N
L
Y
L
E
SREIFRNLTPGMIENF
I
I
P
E
L
C
E
I
I
K
L
L
M
T
Q
S
I
SSNASHK
L
V
P
F
L
A
I
V
L
D
L
T
S
E
T
NTFPVG
F
N
D
L
I
T
Q
S
F
K
LPD
R
Q
V
R
F
L
L
L
I
Y
L
PKLIGPLS
K
S
E
I
S
S
RI
Y
P
H
F
I
Q
G
LTDSD
A
T
L
R
L
Q
T
L
K
T
IPCIVSCLTERQLNNE
L
L
R
F
L
A
K
T
Q
V
DSD
V
E
I
R
T
W
T
V
I
I
I
S
K
I
STILSTS
V
G
N
R
S
N
I
L
A
T
A
F
T
K
S
L
K
DPQ
V
K
P
R
L
A
A
L
Y
G
L
E
K
S
I
ELFD
V
N
T
I
A
N
K
I
L
T
V
I
APGLLDKS
P
I
V
R
G
R
A
K
I
L
F
E
E
Y
L
E
K
L
E
K
E
A
Q
L
IQTN
10
PsiBlast_PDB
63.97
30%
-87
- C5 -
1WDW
1
TRPB1_PYRFU
B:
[186-244]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
---
V
G
P
H
P
------------------------
Y
P
T
I
V
R
-
D
---
F
Q
S
V
I
G
R
E
A
----
K
-
A
----
Q
I
L
E
A
--
E
G
Q
L
P
D
----------
V
I
V
A
C
V
G
G
-
G
S
N
A
M
G
I
F
Y
P
F
V
N
D
K
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
62.68
30%
-92
- C5 -
1V8Z
2
TRPB1_PYRFU
A:
[186-244]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
---
V
G
P
H
P
------------------------
Y
P
T
I
V
R
-
D
---
F
Q
S
V
I
G
R
E
A
----
K
-
A
----
Q
I
L
E
A
--
E
G
Q
L
P
D
----------
V
I
V
A
C
V
G
G
-
G
S
N
A
M
G
I
F
Y
P
F
V
N
D
K
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
Fugue
62.52
13%
-99
- C4 -
2KPQ
-
?
A:
[1-100]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
V
Q
S
M
L
L
N
D
V
K
W
E
K
P
V
T
----
I
S
L
QNGAPR
I
F
N
G
V
Y
E
A
F
D
F
---
L
Q
H
E
W
------------------------
P
A
R
G
D
R
-
A
---
H
E
Q
A
L
R
--
L
----
C
-
R
----
A
S
L
M
G
--
D
V
A
-
G
E
----------
I
A
R
T
A
F
V
A
-
A
S
R
Q
A
H
C
L
M
E
D
K
A
E
A
P
N
T
I
A
S
G
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
Fugue
62.14
15%
-112
* C4 *
2KM6
-
NALP7_HUMAN
A:
[3-98]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
S
P
Q
L
E
W
T
L
Q
T
L
L
E
Q
L
N
----
E
--------
D
E
L
K
S
F
K
S
L
L
W
---
A
F
P
L
E
------------------------
D
V
L
Q
K
T
-
P
---
W
S
E
V
E
E
--
A
D
G
K
K
L
-
A
----
E
I
L
V
N
TS
S
E
N
W
I
R
----------
N
A
T
V
N
I
L
E
-
E
M
N
L
T
E
L
C
K
M
A
K
A
E
M
M
E
D
G
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
59.54
32%
-88
- C3 -
2HBO
3
?
A:
[96-151]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
---
S
G
A
K
L
G
--------------
D
W
V
E
G
--
E
G
E
L
I
S
EEDM
L
F
T
V
R
G
R
I
W
A
G
E
R
T
-
L
I
T
G
T
G
V
F
K
A
L
S
A
R
K
P
R
P
G
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
56.07
25%
-107
- C5 -
2VG8
3
U72B1_ARATH
A:
[325-375]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
F
L
P
----
P
--------
G
F
L
E
R
T
K
K
R
G
F
---
V
I
P
F
W
------------------------
A
P
Q
A
Q
V
-
L
---
A
H
P
S
T
G
--
G
----
F
-
L
----
T
H
C
G
W
--
N
S
T
L
E
S
----------
V
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
55.75
25%
-101
- C5 -
2VCH
3
U72B1_ARATH
A:
[325-375]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
F
L
P
----
P
--------
G
F
L
E
R
T
K
K
R
G
F
---
V
I
P
F
W
------------------------
A
P
Q
A
Q
V
-
L
---
A
H
P
S
T
G
--
G
----
F
-
L
----
T
H
C
G
W
--
N
S
T
L
E
S
----------
V
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
51.92
45%
-88
- C5 -
3NDN
-
METZ_MYCTU
A:
[73-112]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
T
V
S
V
-
F
E
E
R
L
R
L
I
E
G
--
A
----
P
-
A
----
A
F
A
T
A
--
S
G
M
A
A
V
----------
F
T
S
L
G
A
L
L
-
G
A
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
50.92
25%
-50
- C- -
2VCE
1
U72B1_ARATH
A:
[325-375]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
F
L
P
----
P
--------
G
F
L
E
R
T
K
K
R
G
F
---
V
I
P
F
W
------------------------
A
P
Q
A
Q
V
-
L
---
A
H
P
S
T
G
--
G
----
F
-
L
----
T
H
C
G
W
--
N
S
T
L
E
S
----------
V
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
49.30
41%
-2
- C6 -
4ATL
1
RG1_RAUSE
A:
[24-88]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
----
D
F
I
M
G
--
T
G
S
S
A
Y
----------
Q
I
E
G
G
A
R
D
-
G
G
R
G
P
S
I
W
D
T
F
T
H
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_CBE
49.01
41%
5
- C6 -
4ATL
1
RG1_RAUSE
B:
[24-88]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
----
D
F
I
M
G
--
T
G
S
S
A
Y
----------
Q
I
E
G
G
A
R
D
-
G
G
R
G
P
S
I
W
D
T
F
T
H
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_CBE
49.01
41%
-3
- C6 -
3ZJ6
1
RG1_RAUSE
B:
[24-89]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
----
D
F
I
M
G
--
T
G
S
S
A
Y
----------
Q
I
E
G
G
A
R
D
-
G
G
R
G
P
S
I
W
D
T
F
T
H
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
48.69
41%
5
- C6 -
4ATD
-
RG1_RAUSE
A:
[24-89]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
----
D
F
I
M
G
--
T
G
S
S
A
Y
----------
Q
I
E
G
G
A
R
D
-
G
G
R
G
P
S
I
W
D
T
F
T
H
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_CBE
48.66
41%
1
- C6 -
4A3Y
1
RG1_RAUSE
B:
[24-90]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
----
D
F
I
M
G
--
T
G
S
S
A
Y
----------
Q
I
E
G
G
A
R
D
-
G
G
R
G
P
S
I
W
D
T
F
T
H
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
48.23
41%
-4
- C6 -
3ZJ6
1
RG1_RAUSE
A:
[24-89]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
----
D
F
I
M
G
--
T
G
S
S
A
Y
----------
Q
I
E
G
G
A
R
D
-
G
G
R
G
P
S
I
W
D
T
F
T
H
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------