@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo2710: (2016-04-06 )
MQQLKSKKKWLPALIVAVFVGIIVILAIMFGFFQRQEVFDKYEVAYEIDGKLYEVFPISATDIGVDKKSKDKNLYFRVNSYYNIDYLFRLAYKQYEINEPSTNKYYSGLIDYSVADNAYVTQKDVYITNNESYATYDFFDKNGKKIYTYNPEETSNDDYIVRIKPTILQGYEKSDIGSYDDYLNITALFKDKLGMDVNVRIDEDKEMVIFSIK
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------......--...10.--.......20.-------.......30.--------..-.....40........50----------......-----..------60......--..70..---..---...---.80....------....90---....-....100...----....110..------------.....120.......130--.......140...--....150-----....--...160......---.170......-.180.......190.....--------..200.......210.-------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Q
Q
L
K
S
--
K
K
K
W
L
P
--
A
L
I
V
A
V
F
V
G
I
-------
I
V
I
L
A
I
M
F
G
F
--------
F
Q
-
R
Q
E
V
F
D
K
Y
E
V
A
Y
E
ID
G
K
----------
L
Y
E
V
F
P
-----IS------ATDIGVDK--KSKDK
N
---
L
Y
---
F
R
V---N
S
Y
Y
N
I
D
------
Y
L
F
R
L
A
---
Y
K
Q
Y
-EINEPSTNK
Y
----
Y
S
G
L
I
D
Y
SV------------ADN
A
Y
V
T
Q
K
D
V
Y
I
TNNES--
Y
A
T
Y
D
F
FDKNG
K
K
--
I
Y
T
YNPE-----ETSN--D
D
Y
I
V
R
I
K
P
T
I
L---QGYEKSDIGS-YD
D
Y
L
N
I
T
A
L
F
K
D
KLG
M
D
V
--------
N
V
R
IDEDK
E
M
V
I
F
SIK-------------------------------------------------------------------------------------------------------------
33
Fugue
69.44
16%
-69
- C3 -
3CB4
-
LEPA_ECOLI
A:
[1-555]
MKN
I
R
N
F
S
I
I
A
H
IST
L
S
D
R
I
I
Q
I
C
GGQ
S
V
T
L
D
Y
KASDG
E
T
Y
Q
L
N
F
I
D
T
P
GHVDF
S
Y
E
V
S
R
S
L
A
A
C
E
G
A
L
LVVDAGQGVE
A
Q
T
L
A
N
C
Y
T
A
M
E
M
D
L
E
V
V
P
V
L
N
KIDLPAAD
P
E
R
V
A
E
E
I
E
D
IVGIDATD
A
V
R
C
S
AKTGVG
V
Q
D
V
L
E
R
L
V
R
D
IP
P
P
E
G
D
PEGP
L
Q
A
L
II
D
S
W
F
D
NYL
G
V
V
S
L
I
R
I
K
N
G
T
L
R
K
G
D
K
V
K
VMSTG
Q
T
Y
N
AD
R
L
G
I
F
TPK
Q
V
D
R
TELKCG
E
V
G
W
L
V
C
AIKDIHGAPVG
D
T
L
T
L
ARNPA
E
K
A
L
P
G
--
F
K
K
V
K
P
--
Q
V
Y
A
G
L
F
P
-------------------------------------------
V
S
S
D
----------
D
Y
E
A
F
R
-----
D
A
------
L
G
K
L
S
L
N
------
D
A
S
---
L
F
---
Y
E
P
---
E
S
S
S
A
L
G
------
F
G
F
R
C
G
---
F
L
-------------------
G
L
L
H
M
E
I
------------
I
Q
E
R
L
E
R
E
Y
D
L
D
L
I
T
T
A
P
--
T
V
V
Y
E
V
E
T
T
S
R
E
V
--
I
Y
V
D
S
P
S
-----
K
L
P
A
--
V
N
N
I
Y
E
L
R
E
P
I
A
---
E
C
H
M
L
L
P
----
Q
A
Y
L
G
N
V
I
T
L
C
V
E
K
R
G
V
Q
T
--------
N
M
V
Y
H
G
N
Q
V
A
L
T
Y
E
I
P
M
A
E
V
V
LD
F
F
D
R
L
K
S
T
S
RGY
A
S
L
D
Y
N
F
K
R
F
Q
A
S
D
M
V
R
V
D
V
L
I
NGERVDAL
A
L
I
T
H
RDN
S
Q
N
R
G
R
E
L
V
E
K
M
K
D
L
I
PRQQ
F
D
I
A
I
Q
A
A
I
GTHII
A
R
S
T
V
K
Q
L
R
K
N
V
L
A
K
C
Y
G
37
Fugue
65.91
22%
-30
- C6 -
1ZH1
1
POLG_HCVCO
A:
[1-163]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
F
S
C
Q
R
G
Y
K
G
V
W
R
G
D
G
I
M
Q
T
T
C
P
C
G
A
-------
Q
I
T
G
H
V
K
N
G
------------
S
M
R
I
V
G
P
R
T
C
S
N
T
W
H
G
T
--------------
F
P
-----
I
N
------
A
Y
T
T
G
P
C
T
--
P
S
P
A
P
N
-----------------
Y
S
-
R
------
A
L
W
R
V
A
---
A
E
E
Y
V
E
V
T
R
V
G
D
F
H
Y
----
V
T
G
M
-----------------------
T
T
D
N
V
K
C
P
C
Q
V
P
--
A
P
E
F
-
F
T
E
V
D
G
V
R
--
L
H
R
Y
A
P
A
-----
C
K
P
------
L
L
R
E
E
V
T
F
L
---
V
G
L
N
Q
Y
L
V
G
S
-
Q
---------
L
P
C
E
P
E
P
D
V
--------
A
V
---------------------------------------------------------------------------------------------------------------------------
36
Fugue
61.32
14%
-41
- C5 -
4D10
1
CSN5_HUMAN
E:
[24-333]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SIDEIYKYD
K
K
Q
Q
Q
E
I
L
A
A
KPWTKDHHYFK
Y
C
K
I
S
A
L
A
L
L
K
M
V
M
H
A
R
S
G
--
G
N
L
E
V
M
--
G
L
M
L
G
K
V
D
G
E
-------
T
M
I
I
M
D
S
F
A
L
PVEGTETR
V
N
-
A
Q
A
A
A
Y
E
Y
M
A
A
Y
I
E
N
A
K
Q
V
GRLENAI
G
W
Y
H
S
H
P
GY
G
C
W
L
S
------
G
I
D
V
S
T
Q
M
--
L
N
Q
Q
F
Q
EP
F
V
A
---
V
V
I
---
D
P
T
R
T
I
S
A
G
K
V
N
L
G
A
F
R
T
Y
---
P
K
G
Y
-
K
P
P
D
E
G
P
S
E
Y
Q
T
I
P
L
N
K
I
E
D
F
G
V
------------
H
C
K
Q
Y
Y
A
L
E
V
S
Y
F
K
S
S
L
D
--
R
K
L
L
E
L
L
W
N
K
Y
W
V
--
N
T
L
S
S
S
S
-----
L
L
T
N
--
A
D
Y
T
T
G
Q
V
F
D
L
S
---
E
K
L
E
Q
S
E
A
Q
L
G
R
G
S
E
D
K
L
A
K
A
T
R
D
S
C
K
T
T
I
--------
E
A
I
H
G
L
M
S
Q
V
I
K
D
K
L
F
NQINI--------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
57.91
23%
0
* C10 *
2A73
-
?
B:
[754-914]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
R
Y
I
S
K
Y
E
L
D
K
A
----------
F
S
D
R
--------
N
------
T
L
I
I
Y
L
D
K
VS
H
S
E
D
D
C
---
L
A
---
F
K
V
---
H
Q
Y
F
N
V
E
------
L
I
Q
P
G
A
V
K
V
Y
A
Y
Y
-
N
L
E
E
S
C
T
R
F
Y
----
H
P
E
K
E
D
G
K
L
N
KLCRD
E
L
C
R
C
A
E
E
N
C
F
I
Q
K
S
D
D
K
V
T
L
E
E
R
--------
L
D
K
A
C
E
P
GV
D
Y
V
Y
K
T
R
L
V
K
V-
Q
L
S
N
D
F
D
E
Y
I
M
A
I
E
Q
T
I
K
---
S
G
S
D
E
V
Q
V
G
Q
-
Q
R
T
F
I
S
--------------------------------------------------------------------------------------------------------------------------------------------------
40
Fugue
56.50
19%
-19
- C1 -
3WO4
7
IL18R_HUMAN
B:
[1-301]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
P
E
S
C
TSRP
H
I
T
V
V
E
G
E
P
F
Y
L
K
H
C
SCSLA
H
E
I
E
T
T
--
T
K
S
W
Y
K
--
S
S
G
S
Q
E
H
V
E
L
NPRSSSR
I
A
L
H
D
C
V
L
E
F
--------
W
P
V
E
L
N
D
T
G
S
Y
F
F
Q
M
K
N
Y
T
Q
----------
K
W
K
L
N
V
-----
I
R
R
NKHSC
F
T
E
R
Q
V
T
S
--
K
I
V
E
V
K
---
K
F
---
F
Q
I
T
CE
N
S
Y
Y
Q
T
L
------
V
N
S
T
S
L
---
Y
K
N
C
-
K
K
L
L
L
E
N
N
K
N
----
P
-------------------------
T
I
K
K
N
A
E
F
E
D
Q
G
Y
--
Y
S
C
V
H
F
L
H
H
N
G
K
L
--
F
N
I
T
K
T
F
-----
N
I
T
I
--
V
E
D
R
S
N
I
V
P
V
L
L
G
PK
L
N
H
V
A
V
E
L
G
K
--
N
V
R
L
N
C
S
A
L
L
N
E
E
D
V
I
Y
W
M
F
GEENGS
D
P
N
I
H
E
E
K
E
M
R
I
M
T
P
E
G
K
W
H
A
S
K
V
L
R
I
E
NIGESNLNVLY
N
C
T
V
A
S
TG
G
T
D
T
K
S
F
I
L
V
R
KAD----------------------------------------------------------------
34
Fugue
55.83
18%
-29
- C7 -
4ZC4
1
?
A:
[12-158]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QH
P
S
H
E
L
L
K
--
E
N
G
F
------------------------------------------
T
Q
H
V
Y
H
K
Y
R
R
R
C
L
N
E
R
K
----------
R
L
G
I
----------------------
G
--
Q
S
Q
E
M
N
---
T
L
---
F
R
F
---
W
S
F
F
------------------------
L
R
D
H
F
N
K
K
M
----
Y
E
E
F
K
Q
L
A
L
------------
E
D
A
K
----------
E
G
Y
R
--
Y
G
L
E
C
L
F
-----
R
--
Y
Y
S
Y
G
L
E
-----
K
K
F
R
--
L
D
I
F
K
D
F
Q
E
E
T
V
---
K
D
Y
E
A
G
Q
L
Y
G
-
L
E
K
F
W
A
F
L
K
Y
S
K
A
K
-
N
L
D
I
--------
D
P
K
L
Q
E
Y
L
G
K
F
R
-----------------------------------------------------------------------------------------------------------------
41
Fugue
45.02
9%
-55
- C2 -
1PZD
3
A:
[52-322]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KVAAT
R
Q
E
I
F
Q
E
Q
L
A
A
VPEFQGLGPLFKSSP
E
P
V
A
L
T
E
--
S
E
T
E
Y
V
--
I
R
C
T
K
H
T
F
T
D
-------
H
M
V
F
Q
F
D
C
T
N
--------
T
L
-
N
D
Q
T
L
E
N
V
T
V
Q
M
E
P
S
E
A
----------
Y
E
V
L
C
Y
-----
V
P
------
A
R
S
L
P
Y
N
Q
--
P
G
T
C
Y
T
---
L
V
A
L
P
K
E
D
---
P
T
A
V
A
C
T
------
F
S
C
V
M
K
---
F
T
V
K
-
D
C
D
P
T
T
G
E
A
D
----
D
E
G
Y
E
D
E
Y
V
------------
L
E
D
L
E
V
T
I
A
D
H
I
Q
K
V
M
K
L
N
F
E
A
A
W
D
E
V
G
D
E
F
Q
K
--
E
E
T
F
T
L
S
TIKT
L
E
E
A
V
--
G
N
I
V
K
F
L
G
M
H
P
C
---
E
R
S
D
K
V
P
D
N
K
-
N
T
H
T
L
L
L
A
G
V
F
R
G
G
H
D
I
L
V
--------
R
S
R
L
L
L
L
D
T
V
T
M
Q
V
T
A
R
S
SEE
L
P
V
D
I
V
L
A
S
V
G---------------------------------------------------------------------------------------------
18
PsiBlast_PDB
43.28
65%
77
- C11 -
1B59
-
MAP2_HUMAN
A:
[197-217]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
E
V
M
E
S
Y
E
V
--
E
I
D
G
K
----------
T
Y
Q
V
K
P
-----
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
42.83
65%
69
* C11 *
2EA4
-
MAP2_HUMAN
A:
[196-216]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
E
V
M
E
S
Y
E
V
--
E
I
D
G
K
----------
T
Y
Q
V
K
P
-----
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
42.68
65%
73
- C11 -
2GA2
-
MAP2_HUMAN
A:
[196-216]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
E
V
M
E
S
Y
E
V
--
E
I
D
G
K
----------
T
Y
Q
V
K
P
-----
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
42.44
65%
76
- C11 -
1R5G
-
MAP2_HUMAN
A:
[196-216]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
E
V
M
E
S
Y
E
V
--
E
I
D
G
K
----------
T
Y
Q
V
K
P
-----
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
42.11
65%
78
- C11 -
1YW9
-
MAP2_HUMAN
A:
[196-216]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
E
V
M
E
S
Y
E
V
--
E
I
D
G
K
----------
T
Y
Q
V
K
P
-----
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
41.55
65%
68
- C11 -
1BN5
-
MAP2_HUMAN
A:
[305-325]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
E
V
M
E
S
Y
E
V
--
E
I
D
G
K
----------
T
Y
Q
V
K
P
-----
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
41.46
14%
7
* C9 *
1S7M
-
?
A:
[548-705]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
A
K
T
E
I
N
--
K
--------------------------------------------------
D
G
L
T
I
T
P
A
N
G
A
G
----------
A
N
N
A
N
T
-----
I
S
------
V
T
K
D
G
I
S
A
--
G
G
Q
S
V
K
---
N
V
---
V
S
G
---
L
K
K
F
G
D
A
------
N
F
D
P
L
T
---
S
S
A
D
-
N
L
T
K
Q
N
D
D
A
Y
-----
K
G
L
T
N
L
----------------
D
E
K
G
T
D
K
Q
T
P
V
V
A
D
N
T
--
A
A
T
V
G
D
L
R
G
L
G
-----
W
V
I
S
A
D
-----
K
T
T
G
--
G
S
-----
T
E
Y
H
D
---
Q
V
R
N
A
N
E
V
------------
K
F
K
S
G
N
G
I
N
V
--------
S
G
K
T
V
N
G
R
R
E
I
T
F
E
L
A
-------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
41.44
65%
66
- C11 -
1BOA
-
MAP2_HUMAN
A:
[305-325]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
E
V
M
E
S
Y
E
V
--
E
I
D
G
K
----------
T
Y
Q
V
K
P
-----
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
41.40
65%
51
- C11 -
1QZY
-
MAP2_HUMAN
A:
[305-325]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
E
V
M
E
S
Y
E
V
--
E
I
D
G
K
----------
T
Y
Q
V
K
P
-----
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
41.31
65%
71
- C11 -
2EA2
-
MAP2_HUMAN
A:
[196-216]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
E
V
M
E
S
Y
E
V
--
E
I
D
G
K
----------
T
Y
Q
V
K
P
-----
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
40.71
65%
83
- C11 -
1R58
-
MAP2_HUMAN
A:
[196-216]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
E
V
M
E
S
Y
E
V
--
E
I
D
G
K
----------
T
Y
Q
V
K
P
-----
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
39.99
65%
79
- C11 -
1YW7
-
MAP2_HUMAN
A:
[196-216]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
E
V
M
E
S
Y
E
V
--
E
I
D
G
K
----------
T
Y
Q
V
K
P
-----
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
38.66
65%
69
- C11 -
2OAZ
-
MAP2_HUMAN
A:
[196-216]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
E
V
M
E
S
Y
E
V
--
E
I
D
G
K
----------
T
Y
Q
V
K
P
-----
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------