@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs0261: (2015-11-29 )
MDPKKIARINELSKKKKTVGLTGEEKVEQAKLREEYIEGFRRSVRHHVEGIKLVDDEGNDVTPEKLRQVQREKGLHGRSLDDPNS
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------.-.....-.---------..10....------------------....20..--......30---.--.......40-----........50-----......-.-..-60........70--........80....----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------M-
D
P
K
K
I
-
A
---------
R
I
N
E
L
S
K
K
------------------KKTVGLT
G
--
E
E
K
V
E
Q
A
K
---
L
--
R
E
E
Y
I
E
G
F
R
-----
R
S
V
R
H
H
VE
G
------
I
K
L
VDD-E-GN-DV
T
P
E
K
L
R
Q
V
Q
R
--EKGLHGRSLDDPNS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
77.32
49%
8
- C3 -
3BHP
-
YNZC_BACSU
A:
[2-52]
-------------------------------------------------------------------------------------------------------------------------
I
-
S
N
A
K
I
-
A
---------
R
I
N
E
L
A
A
K
------------------
A
K
A
G
V
I
T
E
--
E
E
K
A
E
Q
Q
K
---
L
--
R
Q
E
Y
L
K
G
F
R
-----
S
S
M
K
N
T
L
K
S
------
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
76.85
48%
8
- C3 -
3BHP
-
YNZC_BACSU
A:
[2-52]
-------------------------------------------------------------------------------------------------------------------------
I
-
S
N
A
K
I
-
A
---------
R
I
N
E
L
A
A
K
------------------
A
K
A
G
V
I
T
E
--
E
E
K
A
E
Q
Q
K
---
L
--
R
Q
E
Y
L
K
G
F
R
-----
S
S
M
K
N
T
L
K
S
------
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
71.93
53%
10
- C3 -
2JVD
-
YNZC_BACSU
A:
[2-48]
-------------------------------------------------------------------------------------------------------------------------
I
-
S
N
A
K
I
-
A
---------
R
I
N
E
L
A
A
K
------------------
A
K
A
G
V
I
T
E
--
E
E
K
A
E
Q
Q
K
---
L
--
R
Q
E
Y
L
K
G
F
R
-----
S
S
M
K
L
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
66.57
58%
30
- C3 -
2HEP
-
YNZC_BACSU
A:
[1-42]
------------------------------------------------------------------------------------------------------------------------M
I
-
S
N
A
K
I
-
A
---------
R
I
N
E
L
A
A
K
------------------
A
K
A
G
V
I
T
E
--
E
E
K
A
E
Q
Q
K
---
L
--
R
Q
E
Y
L
K
G
F
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
65.52
22%
12
- C2 -
4OYD
-
?
B:
[1-117]
-------------------------------------------------------------------------------------------------------------------------
A
-
D
P
K
K
V
-
L
D
K
A
K
D
Q
A
E
N
R
V
R
E
L
K
Q
K
L
E
E
L
--------------
Y
K
E
A
R
K
L
D
--
L
T
Q
E
M
R
R
K
---
L
--
E
L
R
Y
I
A
A
M
L
-----
M
A
I
G
D
I
Y
N
A
------
I
R
Q
A
K
Q
-
E
-
A
D
-
K
L
K
K
A
G
L
V
N
S
Q
Q
--
L
D
E
L
K
R
R
L
E
E
L
K
E
E
A
S
R
K
A
R
D
Y
G
R
E
F
Q
L
K
L
E
Y
G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
65.40
20%
57
* C2 *
4UI1
3
RGMC_HUMAN
C:
[3-96]
---------------------------------------------------------------------------------------------------------------------------
S
Q
C
K
I
-
L
---------
R
C
N
A
E
Y
V
S
------------------
S
T
L
----
S
--
L
R
G
G
L
C
R
A
---
L
--
R
S
-
Y
A
L
C
T
R
-----
R
T
A
R
T
---------------
C
-
R
-
G
D
-
L
A
F
H
S
A
V
H
G
I
E
D
--
L
M
I
Q
H
N
C
S
R
Q
G
P
T
A
PP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
65.39
60%
21
- C3 -
2JVD
-
YNZC_BACSU
A:
[6-46]
------------------------------------------------------------------------------------------------------------------------------
K
I
-
A
---------
R
I
N
E
L
A
A
K
------------------
A
K
A
G
V
I
T
E
--
E
E
K
A
E
Q
Q
K
---
L
--
R
Q
E
Y
L
K
G
F
R
-----
S
S
M
K
L
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
64.58
17%
16
- C2 -
1FYH
1
IFNG_HUMAN
A:
[1-125]
-------------------------------------------------------------------------------------------------------------------------
M
-
Q
D
P
Y
V
-
K
---------
E
A
E
N
L
K
K
Y
F
NAGHSDVADNGTLF
L
G
I
L
K
N
W
K
E
E
S
--
D
R
K
I
M
Q
S
Q
---
I
--
V
S
F
Y
F
K
L
F
K
N
F
KDD
Q
S
I
Q
K
S
V
E
T
------
I
K
E
D
M
N
-
V
-
K
F
F
N
S
N
K
K
K
R
D
D
F
E
K
--
L
T
N
Y
S
V
T
D
L
N
V
Q
R
K
A
I
D
E
L
I
Q
V
M
A
E
L
GANV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
64.01
53%
30
- C3 -
2HEP
-
YNZC_BACSU
A:
[2-42]
-------------------------------------------------------------------------------------------------------------------------
I
-
S
N
A
K
I
-
A
---------
R
I
N
E
L
A
A
K
------------------
A
K
A
G
V
I
T
E
--
E
E
K
A
E
Q
Q
K
---
L
--
R
Q
E
Y
L
K
G
F
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
60.61
22%
22
- C2 -
2HGC
-
YJCQ_BACSU
A:
[5-82]
----------------------------------------------------------------------------------------------------------------------------
K
L
R
Y
-
A
---------
I
L
K
E
I
F
E
G
NTPLS-------------
E
N
D
I
G
V
T
E
--
D
Q
F
D
D
A
V
N
---
F
L
K
R
E
G
Y
I
I
G
V
----------
H
Y
S
D
D
------
R
P
H
L
Y
K
-
L
-
G
P
-
E
L
T
-
E
K
G
E
N
Y
L
K
--
E
N
G
T
W
S
K
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
55.88
58%
41
- C3 -
2HEP
-
YNZC_BACSU
A:
[6-42]
------------------------------------------------------------------------------------------------------------------------------
K
I
-
A
---------
R
I
N
E
L
A
A
K
------------------
A
K
A
G
V
I
T
E
--
E
E
K
A
E
Q
Q
K
---
L
--
R
Q
E
Y
L
K
G
F
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
54.00
21%
23
- C2 -
1K2Y
2
ALGC_PSEAE
X:
[5-463]
KAPTLPASIFRAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVSDVGMVPTPVLYYAANVLEGKSGVMLTGAHNPPDYNGFKIVVAGET
L
-
A
N
E
Q
I
-
Q
---------
A
L
R
E
R
I
E
K
------------------
N
D
L
A
--
S
G
--
V
G
S
V
E
Q
V
D
---
I
--
L
P
R
Y
F
K
Q
I
R
-----
D
D
I
A
M
A
-
K
P
------
M
K
V
V
V
D
-
C
-
G
N
-
G
V
A
G
V
I
A
P
Q
L
I
E
--
A
L
G
C
S
V
I
P
L
Y
C
E
V
D
GNFPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYGGRPVMWKTGHSLIKKKMKETGALLAGEMSGHVFFKERWFGFDDGIYSAARLLEILSQDQRDSEHVFSAFPSDISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKGWGLVRASNTTPVLVLRFEADTEEELERIKTVFRNQLKAVDSSLPVPF
31
Fugue
53.97
19%
28
- C2 -
1TDP
-
CB2I_CARML
A:
[1-111]
----------------------------------------------------------------------------------------------------MDIKS
Q
T
L
Y
L
N
L
S
E
A
Y
K
D
P
E
V
K
-
A
N
E
F
L
-
S
---------
K
L
V
V
Q
C
A
G
------------------
K
L
T
A
S
N
S
E
--
N
S
Y
I
E
V
I
S
---
L
--
L
S
R
G
I
S
S
Y
Y
-----
L
S
H
K
R
I
I
P
S
SML
T
I
Y
T
Q
I
Q
K
D
-
I
-
K
N
G
N
I
D
T
E
K
L
R
K
Y
E
I
--
A
K
G
L
--
M
S
V
P
Y
I
Y
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
51.37
22%
47
* C4 *
4CU5
-
?
A:
[1-85]
-------------------------------------------------------------------------------------------------------------------------
M
-
Y
K
H
T
I
-
V
---------
Y
D
G
E
V
D
K
I
------------------
S
A
T
V
V
G
W
G
Y
N
D
G
K
I
L
I
C
D
---
I
--
K
D
-
Y
V
P
G
-------
Q
T
Q
N
L
Y
V
V
G
------
G
G
A
C
E
K
-
I
-
S
S
--
I
T
K
E
K
F
I
M
I
K
G
ND
R
F
D
T
L
Y
K
A
L
D
F
I
N
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
50.04
28%
-29
- C3 -
4BGV
-
MDH_PICTO
A:
[280-317]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
G
K
N
G
--
V
E
K
I
Y
D
L
K
---
F
--
N
E
D
E
L
E
A
W
K
-----
K
S
V
E
S
V
K
K
N
------
S
A
I
A
D
D
-
Y
-
F
A
-
K
N
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
48.96
13%
65
- C2 -
4OI6
4
?
A:
[9-89]
-----------------------------------------------------------------------------------------------------------------------A
H
F
M
D
V
H
R
G
M
H
---------
G
I
T
S
D
Q
L
H
------------------
Q
A
H
Q
A
D
L
A
--
V
E
K
D
E
N
V
H
---
F
--
E
Q
A
W
A
D
P
A
S
-----
G
T
I
Y
C
L
S
E
G
------
P
-------------
S
A
E
A
V
Q
R
V
H
E
--
R
A
G
H
K
A
D
E
I
H
E
V
P
L
SA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
48.80
17%
-3
- C3 -
3R15
-
?
A:
[29-75]
-------------------------------------------------------------------------------------------------------------------------------------------
F
I
N
A
L
E
N
E
------------------
L
K
T
R
H
I
P
A
--
G
A
V
I
D
M
L
A
---
E
--
I
N
T
E
A
L
A
L
--------------
D
------
Y
Q
I
V
D
K
-
K
P
G
T
-
S
I
A
Q
G
T
K
A
A
A
L
R
--
K
R
F
I
P
K
K
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
45.03
32%
19
- C3 -
1OFC
-
X:
[90-108]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
A
E
P
L
T
E
--
E
E
I
Q
E
K
E
N
---
L
--
L
S
Q
G
F
T
A
W
T
-----
K
R
D
F
N
Q
F
I
K
------
A
N
E
K
Y
G
-
R
-
D
D
-
I
D
N
I
A
K
D
V
E
G
K
T
--
P
E
E
V
I
E
Y
N
A
V
F
W
E
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
42.84
31%
10
- C3 -
1Y96
-
GEMI7_HUMAN
B:
[49-74]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
S
L
E
S
--
Q
E
Q
R
A
R
A
A
---
L
--
R
E
R
Y
L
R
S
L
L
-----
A
M
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
41.35
11%
12
- C3 -
3PRO
-
?
C:
[9-59]
-----------------------------------------------------------------------------------------------------------------------------------------------
K
F
A
M
------------------
Q
R
D
L
G
I
F
P
--
T
Q
L
P
Q
Y
L
Q
T
E
K
L
--
A
R
T
Q
A
A
A
I
E
-----
R
E
F
G
A
Q
F
A
G
------
S
W
I
E
R
N
E
D
-
G
S
-
F
K
L
V
A
A
T
S
G
A
R
K
--
S
S
T
L
G
G
V
E
V
R
N
V
R
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------