@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs0302: (2015-11-30 )
MLKPSIDTLLDKVPSKYSLVILQAKRAHELEAGEKATQDFKSVKSTLRALEEIESGNVVIHPDPSAKRASVRARIEAERLAKEEEERKIKEQIAKEKEDGEKI
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10..---......20.......---.30.......---------------.40..--......50..----------......60.....-...70----......-----------------...80..-------.---.....90........100.--------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MLKP
S
I
D
T
L
L
D
KV---PSK
Y
S
L
V
I
L
Q
AKRAH---ELEAG
E
K
A
T
Q
---------------
D
F
K
S
V
--
K
S
T
L
R
A
L
E
E
I----------ESG
N
V
V
I
HPDPSA-
K
R
A
S
-----
V
R
A
R
I
E
-----------------
A
E
R
L
A
K
E
-------
E
---
E
E
R
K
I
K
E
Q
I
A
K
E
KEDGEKI--------------
25
HHSearch
73.10
28%
-28
* C4 *
2A6H
-
RPOZ_THET8
E:
[2-87]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
P
G
I
D
K
L
F
G
M
V
---
D
S
K
Y
R
L
T
V
V
V
A
K
R
A
Q
---
Q
L
L
R
H
G
F
K
N
T
VLEPEERPKMQTLEG
L
F
D
D
P
--
N
A
E
T
W
A
M
K
E
L
----------
L
T
G
R
L
V
F
G
E
N
L
V
P
-
E
D
R
L
-----
Q
K
E
M
E
R
-----------------
I
Y
P
G
E
----------------------------------------------
40
Fugue
67.64
17%
-10
* C5 *
1KO6
1
NUP98_HUMAN
A:
[36-187]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MHPAG
I
I
L
T
KVGY
Y
T
I
P
S
M
D
D
L
A
K
I
T
---
N
E
K
G
E
C
I
V
S
D
F
T
I
G
R
---
K
G
Y
G
S
I
Y
F
E
G
---------------
D
V
N
L
T
--
N
L
N
L
D
D
I
V
H
I
----------
R
R
K
E
V
V
V
Y
L
D
D
N
Q
-
K
P
P
V
GEGLN
R
K
A
E
V
T
L
D
G
V
W
P
T
D
KTSRCLIKS
P
D
R
L
A
D
I
-------
N
---
Y
E
G
R
L
E
A
V
S
R
K
Q
G
A
Q
F
K
E
Y
RPETG
S
W
V
F
K
V
SHF
44
Fugue
64.26
14%
-52
* C3 *
4D10
-
CSN3_HUMAN
C:
[3-403]
S
A
L
E
Q
F
V
N
S
V
R
Q
L
SAQGQM
T
Q
L
C
E
L
I
N
K
SGELLAKN
L
S
H
L
D
T
V
LGALDVQE
H
S
L
G
V
L
A
V
L
F
V
KFSMPSVPDF
E
T
L
F
S
Q
V
Q
L
F
I
S
TCNGEHIRYA
T
D
T
F
A
G
L
C
H
Q
L
T
N
A
L
V
E
R
KQP
L
R
G
I
G
I
L
K
Q
A
I
D
K
M
Q
MNTNQLT
S
I
H
A
D
L
C
Q
L
C
L
L
A
KCFKPA
L
P
Y
L
D
VDM
M
D
I
C
K
E
NGAYD
A
K
H
F
L
C
Y
Y
Y
Y
G
G
M
I
Y
T
G
L
KN
F
E
R
A
L
Y
F
Y
E
Q
A
I
T
TPAMAVS
H
I
M
L
E
S
Y
K
K
Y
I
L
V
S
L
I
L
L
G
K
V
Q
Q
L
P
KYTS
Q
I
V
G
R
F
I
K
P
L
S
N
A
Y
H
E
L
A
Q
V
Y
S
T
NN
P
S
E
L
R
N
L
V
N
K
H
S
E
T
F
T
R
D
NN
M
G
L
V
K
Q
C
L
S
S
L
Y
K
K
N
I
Q
R
L
T
K
T
F
---
L
T
L
S
L
Q
D
M
A
S
R
V
Q
L
S
---
G
P
Q
E
A
E
K
Y
V
L
---------------
H
M
I
E
---
D
G
E
I
F
A
S
I
N
Q
----------
K
D
G
M
V
S
F
H
D
N
P
E
K
Y
N
N
P
A
-----
M
L
H
N
I
D
-----------------
Q
E
M
L
K
C
I
-------
E
---
L
D
E
R
L
K
A
M
D
Q
E
I
T
V
N
P
Q
F
---------------
35
Fugue
64.11
22%
35
- C4 -
1HQM
-
RPOZ_THEAQ
E:
[1-98]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
E
P
G
I
D
K
L
F
G
M
V
---
D
S
K
Y
R
L
T
V
V
V
A
K
R
A
Q
---
Q
L
L
R
H
R
F
K
N
T
---------------
V
L
E
P
E
--
E
R
P
-----------------
K
M
R
T
L
E
G
L
Y
D
D
P
N
-
A
V
T
W
-----
A
M
K
E
L
L
-----------------
T
G
R
L
F
F
G
-------
E
NLV
P
E
D
R
L
Q
K
E
M
E
R
L
Y
P
T
E
E
E
---------------
43
Fugue
59.95
24%
-10
- C5 -
2KL8
-
?
A:
[1-85]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
---
E
M
D
I
R
F
R
------------------
G
D
---
D
L
E
A
F
E
K
A
L
K
---------------
E
M
I
R
Q
A
R
K
F
A
G
T
V
T
Y
T
L
----------
D
G
N
D
L
E
I
R
I
T
G
V
P
-
E
Q
V
R
-----
K
E
L
A
K
E
-----------------
A
E
R
L
A
K
E
-------
F
---
N
-
I
T
V
T
Y
T
I
R
L
E
H
H
H
H
H
H
---------------
38
Fugue
57.07
12%
-46
- C3 -
2FBH
4
?
A:
[10-146]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Y
F
G
T
L
L
A
Q
T
S
R
A
W
R
A
E
L
D
R
R
L
S
H
L
GLS
Q
A
R
W
L
V
L
L
H
L
A
R
H
R
D
SPT
Q
R
E
L
A
Q
S
V
G
V
---------------
E
G
P
T
L
--
A
R
L
L
D
G
L
E
S
Q
GL
V
R
R
L
A
V
A
E
D
R
R
A
K
H
I
V
L
T
P
K
A
-
D
V
L
I
-----
A
D
I
E
A
I
-----------------
A
A
S
V
R
N
D
V
L
TGID
E
S
---
E
Q
A
L
C
Q
Q
V
L
L
R
I
L
A
N
L
E
N
R
--------------
12
PsiBlast_PDB
56.90
50%
-94
- C4 -
2O5I
-
RPOZ_THET8
E:
[2-30]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
P
G
I
D
K
L
F
G
M
V
---
D
S
K
Y
R
L
T
V
V
V
A
K
R
A
Q
---
Q
L
L
R
H
G
F
K
N
T
---------------
V
L
E
P
E
--
E
R
P
K
M
Q
T
L
E
G
----------
L
F
D
D
P
N
A
V
T
W
A
M
K
-
E
L
L
T
-----
G
R
L
V
F
G
-----------------
E
N
L
V
P
E
D
-------
R
---
L
Q
K
E
M
E
R
L
Y
P
V
E
---------------------
36
Fugue
55.76
41%
-4
- C4 -
1BB1
1
?
A:
[4-34]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
-----
E
I
A
A
I
E
-----------------
Y
E
Q
A
A
I
K
-------
E
---
E
I
A
A
I
K
D
K
I
A
A
I
K
E
Y
I
A
A
I
--------------
13
PsiBlast_PDB
55.47
50%
-95
- C4 -
2O5J
-
RPOZ_THET8
E:
[2-30]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
P
G
I
D
K
L
F
G
M
V
---
D
S
K
Y
R
L
T
V
V
V
A
K
R
A
Q
---
Q
L
L
R
H
G
F
K
N
T
---------------
V
L
E
P
E
--
E
R
P
K
M
Q
T
L
E
G
----------
L
F
D
D
P
N
A
V
T
W
A
M
K
-
E
L
L
T
-----
G
R
L
V
F
G
-----------------
E
N
L
V
P
E
D
-------
R
---
L
Q
K
E
M
E
R
L
Y
P
V
E
---------------------
20
PsiBlast_PDB
54.92
50%
-92
- C4 -
4G7Z
-
RPOZ_THET8
E:
[2-30]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
P
G
I
D
K
L
F
G
M
V
---
D
S
K
Y
R
L
T
V
V
V
A
K
R
A
Q
---
Q
L
L
R
H
G
F
K
N
T
---------------
V
L
E
P
E
--
E
R
P
K
M
Q
T
L
E
G
----------
L
F
D
D
P
N
A
V
T
W
A
M
K
-
E
L
L
T
-----
G
R
L
V
F
G
-----------------
E
N
L
V
P
E
D
-------
R
---
L
Q
K
E
M
E
R
L
Y
P
V
----------------------
17
PsiBlast_PDB
54.50
50%
-89
- C4 -
3AOI
-
RPOZ_THET8
E:
[2-30]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
P
G
I
D
K
L
F
G
M
V
---
D
S
K
Y
R
L
T
V
V
V
A
K
R
A
Q
---
Q
L
L
R
H
G
F
K
N
T
---------------
V
L
E
P
E
--
E
R
P
K
M
Q
T
L
E
G
----------
L
F
D
D
P
N
A
V
T
W
A
M
K
-
E
L
L
T
-----
G
R
L
V
F
G
-----------------
E
N
L
V
P
E
D
-------
R
---
L
Q
K
E
M
E
R
L
Y
P
-----------------------
18
PsiBlast_PDB
54.26
50%
-85
- C4 -
4G7H
-
RPOZ_THET8
E:
[2-30]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
P
G
I
D
K
L
F
G
M
V
---
D
S
K
Y
R
L
T
V
V
V
A
K
R
A
Q
---
Q
L
L
R
H
G
F
K
N
T
---------------
V
L
E
P
E
--
E
R
P
K
M
Q
T
L
E
G
----------
L
F
D
D
P
N
A
V
T
W
A
M
K
-
E
L
L
T
-----
G
R
L
V
F
G
-----------------
E
N
L
V
P
E
D
-------
R
---
L
Q
K
E
M
E
R
L
Y
P
V
----------------------
1
PsiBlast_PDB
53.95
50%
-87
- C4 -
1IW7
-
RPOZ_THET8
E:
[2-30]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
P
G
I
D
K
L
F
G
M
V
---
D
S
K
Y
R
L
T
V
V
V
A
K
R
A
Q
---
Q
L
L
R
H
G
F
K
N
T
---------------
V
L
E
P
E
--
E
R
P
K
M
Q
T
L
E
G
----------
L
F
D
D
P
N
A
E
T
W
A
M
K
-
E
L
L
T
-----
G
R
L
V
F
G
-----------------
E
N
L
V
P
E
D
-------
R
---
L
Q
K
E
M
E
R
I
Y
P
G
E
---------------------
8
PsiBlast_PDB
53.92
50%
-79
- C4 -
2CW0
-
RPOZ_THET8
E:
[2-30]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
P
G
I
D
K
L
F
G
M
V
---
D
S
K
Y
R
L
T
V
V
V
A
K
R
A
Q
---
Q
L
L
R
H
G
F
K
N
T
---------------
V
L
E
P
E
--
E
R
P
K
M
Q
T
L
E
G
----------
L
F
D
D
P
N
A
E
T
W
A
M
K
-
E
L
L
T
-----
G
R
L
V
F
G
-----------------
E
N
L
V
P
E
D
-------
R
---
L
Q
K
E
M
E
R
I
Y
P
G
E
---------------------
19
PsiBlast_PDB
53.10
50%
-84
- C4 -
4G7O
-
RPOZ_THET8
E:
[2-30]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
P
G
I
D
K
L
F
G
M
V
---
D
S
K
Y
R
L
T
V
V
V
A
K
R
A
Q
---
Q
L
L
R
H
G
F
K
N
T
---------------
V
L
E
P
E
--
E
R
P
K
M
Q
T
L
E
G
----------
L
F
D
D
P
N
A
V
T
W
A
M
K
-
E
L
L
T
-----
G
R
L
V
F
G
-----------------
E
N
L
V
P
E
D
-------
R
---
L
Q
K
E
M
E
R
L
Y
P
V
----------------------
5
PsiBlast_PDB
52.73
50%
-94
- C4 -
2A69
-
RPOZ_THET8
E:
[2-30]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
P
G
I
D
K
L
F
G
M
V
---
D
S
K
Y
R
L
T
V
V
V
A
K
R
A
Q
---
Q
L
L
R
H
G
F
K
N
T
---------------
V
L
E
P
E
--
E
R
P
K
M
Q
T
L
E
G
----------
L
F
D
D
P
N
A
E
T
W
A
M
K
-
E
L
L
T
-----
G
R
L
V
F
G
-----------------
E
N
L
V
P
E
D
-------
R
---
L
Q
K
E
M
E
R
I
Y
P
G
E
---------------------
11
PsiBlast_PDB
52.30
50%
-91
- C4 -
3WOD
-
RPOZ_THET8
E:
[2-30]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
P
G
I
D
K
L
F
G
M
V
---
D
S
K
Y
R
L
T
V
V
V
A
K
R
A
Q
---
Q
L
L
R
H
G
F
K
N
T
---------------
V
L
E
P
E
--
E
R
P
K
M
Q
T
L
E
G
----------
L
F
D
D
P
N
A
E
T
W
A
M
K
-
E
L
L
T
-----
G
R
L
V
F
G
-----------------
E
N
L
V
P
E
D
-------
R
---
L
Q
K
E
M
E
R
I
Y
P
G
E
---------------------
9
PsiBlast_PDB
52.26
50%
-93
- C4 -
2BE5
-
RPOZ_THET8
E:
[2-30]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
P
G
I
D
K
L
F
G
M
V
---
D
S
K
Y
R
L
T
V
V
V
A
K
R
A
Q
---
Q
L
L
R
H
G
F
K
N
T
---------------
V
L
E
P
E
--
E
R
P
K
M
Q
T
L
E
G
----------
L
F
D
D
P
N
A
E
T
W
A
M
K
-
E
L
L
T
-----
G
R
L
V
F
G
-----------------
E
N
L
V
P
E
D
-------
R
---
L
Q
K
E
M
E
R
I
Y
P
G
E
---------------------
2
PsiBlast_PDB
51.98
50%
-95
- C4 -
1SMY
-
RPOZ_THET8
E:
[2-30]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
P
G
I
D
K
L
F
G
M
V
---
D
S
K
Y
R
L
T
V
V
V
A
K
R
A
Q
---
Q
L
L
R
H
G
F
K
N
T
---------------
V
L
E
P
E
--
E
R
P
K
M
Q
T
L
E
G
----------
L
F
D
D
P
N
A
E
T
W
A
M
K
-
E
L
L
T
-----
G
R
L
V
F
G
-----------------
E
N
L
V
P
E
D
-------
R
---
L
Q
K
E
M
E
R
I
Y
P
G
E
---------------------
4
PsiBlast_PDB
51.51
50%
-93
- C4 -
2A68
-
RPOZ_THET8
E:
[2-30]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
P
G
I
D
K
L
F
G
M
V
---
D
S
K
Y
R
L
T
V
V
V
A
K
R
A
Q
---
Q
L
L
R
H
G
F
K
N
T
---------------
V
L
E
P
E
--
E
R
P
K
M
Q
T
L
E
G
----------
L
F
D
D
P
N
A
E
T
W
A
M
K
-
E
L
L
T
-----
G
R
L
V
F
G
-----------------
E
N
L
V
P
E
D
-------
R
---
L
Q
K
E
M
E
R
I
Y
P
G
E
---------------------