@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs0312: (2015-11-30 )
MKIGDKLKGTVTGIRPYGAFVSLEDGRTGLIHISEIKTGYIDNIYDVLSVGDEVYVQVIDVDEFTQKASLSLRTLEEERHHIQHRHRFSNNRLKIGFKPLEENLPSWVEEGLAYLNNK
Atome Classification :
(20 SA)
------------------------------------------.........10.....--.--..20...--.---...---.30.......-.40.---------.--......50........60....-....70..--......80...--.---..-------.----.---------90........100..-.....110......------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------MKIGDKL
K
G
T
VTGIRP--Y--
G
A
F
V
S
LE--D---G
R
T
---
G
L
I
H
I
SEIKT-G
Y
I
D
---------
N
--
I
Y
D
V
L
SVG
D
E
V
Y
V
Q
V
I
D
V
D
E
F
T
-
Q
K
ASL
S
L
R
--
T
L
E
E
E
R
H
H
I
Q
H
--
R
---
H
R-------F----S---------NN
R
L
K
I
G
F
K
P
L
E
E
N
L
-
P
S
W
V
E
E
G
L
A
Y
LNNK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
84.91
38%
-109
- C3 -
2K4K
-
GS13_BACSU
A:
[5-122]
------------------------------------------
F
E
V
G
S
V
Y
T
G
K
V
T
G
L
Q
A
--
Y
--
G
A
F
V
A
L
D
--
E
---
E
T
Q
---
G
L
V
H
I
S
E
V
T
H
-
G
F
V
K
---------
D
--
I
N
E
H
L
S
V
G
D
E
V
Q
V
K
V
L
A
V
D
E
E
K
-
G
K
I
S
L
S
I
R
--
A
T
Q
A
A
P
E
K
K
E
S
--
K
PRK
P
K
-------
A
AQVS
E
---------
E
A
S
T
P
Q
G
F
N
T
L
K
D
K
L
-
E
E
W
I
E
M
S
N
R
K
D
L
I
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
83.88
37%
-110
- C3 -
2K4K
-
GS13_BACSU
A:
[5-120]
------------------------------------------
F
E
V
G
S
V
Y
T
G
K
V
T
G
L
Q
A
--
Y
--
G
A
F
V
A
L
D
--
E
---
E
T
Q
---
G
L
V
H
I
S
E
V
T
H
-
G
F
V
K
---------
D
--
I
N
E
H
L
S
V
G
D
E
V
Q
V
K
V
L
A
V
D
E
E
K
-
G
K
I
S
L
S
I
R
--
A
T
Q
A
A
P
E
K
K
E
S
--
K
---
P
R
KPKAAQV
S
----
E
---------
E
A
S
T
P
Q
G
F
N
T
L
K
D
K
L
-
E
E
W
I
E
M
S
N
R
K
D
L
I
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
78.63
36%
-136
- C3 -
3BZK
-
?
A:
[652-724]
------------------------------------------
L
K
P
G
M
V
L
E
G
V
V
T
N
V
T
N
--
F
--
G
A
F
V
D
I
G
--
V
---
H
Q
D
---
G
L
V
H
I
S
A
L
S
E
-
K
F
V
K
---------
D
--
P
Y
E
V
V
K
A
G
D
I
V
K
V
K
V
M
E
V
D
I
P
R
-
N
R
V
G
L
S
M
R
--
M
S
D
T
P
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
77.51
36%
-138
- C3 -
2OCE
-
?
A:
[652-724]
------------------------------------------
L
K
P
G
M
V
L
E
G
V
V
T
N
V
T
N
--
F
--
G
A
F
V
D
I
G
--
V
---
H
Q
D
---
G
L
V
H
I
S
A
L
S
E
-
K
F
V
K
---------
D
--
P
Y
E
V
V
K
A
G
D
I
V
K
V
K
V
M
E
V
D
I
P
R
-
N
R
V
G
L
S
M
R
--
M
S
D
T
P
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
60
Fugue
77.33
31%
-91
- C3 -
4NNG
-
A:
[1-157]
-----------------------------NLY
F
Q
H
M
R
H
F
A
R
T
H
A
I
G
Q
I
V
A
G
K
V
T
K
L
V
P
--
F
--
G
A
F
V
R
V
E
--
E
---
G
I
E
---
G
L
V
H
I
S
E
L
A
E
-
R
H
V
E
---------
V
--
P
D
Q
V
V
A
V
G
D
D
A
M
V
K
V
I
D
I
D
L
E
R
-
R
R
I
S
L
S
L
K
--
Q
A
N
E
D
Y
T
E
E
F
D
--
P
---
A
K
-------
Y
----
G
MADSYDEQG
N
Y
I
F
P
E
G
F
D
A
E
T
N
E
W
-
L
E
G
F
E
K
Q
R
A
E
W
E
A
R
Y
A
E
A
E
R
R
H
K
M
H
T
A
Q
M
E
K-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
76.04
43%
-136
- C3 -
2EQS
-
DHX8_HUMAN
A:
[264-341]
--------------------------------------------
I
G
D
I
Y
N
G
K
V
T
S
I
M
Q
--
F
--
G
C
F
V
Q
L
E
--
G
---
L
R
K
R
W
E
G
L
V
H
I
S
E
L
R
R
E
G
R
V
A
---------
N
--
V
A
D
V
V
S
K
G
Q
R
V
K
V
K
V
L
S
---
F
T
G
T
K
T
S
L
S
M
K
--
D
V
D
Q
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
51
HHSearch
75.04
35%
-116
- C3 -
3BZC
-
?
A:
[652-728]
------------------------------------------
L
K
P
G
M
V
L
E
G
V
V
T
N
V
T
N
--
F
--
G
A
F
V
D
I
G
--
V
---
H
Q
D
---
G
L
V
H
I
S
A
L
S
E
-
K
F
V
K
---------
D
--
P
Y
E
V
V
K
A
G
D
I
V
K
V
K
V
M
E
V
D
I
P
R
-
N
R
V
G
L
S
M
R
--
M
S
D
T
P
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
74.94
36%
-126
- C3 -
3BZC
-
?
A:
[652-724]
------------------------------------------
L
K
P
G
M
V
L
E
G
V
V
T
N
V
T
N
--
F
--
G
A
F
V
D
I
G
--
V
---
H
Q
D
---
G
L
V
H
I
S
A
L
S
E
-
K
F
V
K
---------
D
--
P
Y
E
V
V
K
A
G
D
I
V
K
V
K
V
M
E
V
D
I
P
R
-
N
R
V
G
L
S
M
R
--
M
S
D
T
P
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
74.41
31%
-85
- C3 -
3AEV
-
IF2A_PYRHO
A:
[12-124]
---------------------------------------------
G
E
F
V
V
A
T
V
K
R
I
H
N
--
Y
--
G
A
F
L
E
L
D
--
E
YP-
G
K
E
---
A
F
M
H
I
S
E
V
A
S
-
T
W
V
R
---------
N
--
I
R
D
Y
L
K
E
G
Q
K
V
V
A
K
V
I
R
V
D
P
R
K
-
G
H
I
D
L
S
L
R
RV
T
Q
Q
Q
R
K
A
K
L
Q
E
F
K
R
---
A
Q
-------
K
----
A
---------
E
N
L
L
R
L
A
A
E
K
L
G
K
D
F
E
A
A
W
R
E
V
W
V
P
L
E
E
E
W
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
HHSearch
74.23
34%
-119
- C3 -
3AEV
-
IF2A_PYRHO
A:
[9-93]
------------------------------------------
P
E
E
G
E
F
V
V
A
T
V
K
R
I
H
N
--
Y
--
G
A
F
L
E
L
D
EY
P
---
G
K
E
---
A
F
M
H
I
S
E
V
A
S
-
T
W
V
R
---------
N
--
I
R
D
Y
L
K
E
G
Q
K
V
V
A
K
V
I
R
V
D
P
R
K
-
G
H
I
D
L
S
L
R
--
R
V
T
Q
Q
Q
R
K
A
K
L
--
Q
---
E
F
-------
K
----
R
---------
A
Q
K
A
E
N
L
L
R
L
A
A
E
K
L
-
G
K
D
F
E
A
A
W
R
E
V
W
V
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
46
HHSearch
73.48
39%
-106
- C3 -
2EQS
-
DHX8_HUMAN
A:
[262-348]
------------------------------------------
P
T
I
G
D
I
Y
N
G
K
V
T
S
I
M
Q
--
F
--
G
C
F
V
Q
L
E
--
G
LRK
R
W
E
---
G
L
V
H
I
S
E
L
R
R
E
G
R
V
A
---------
N
--
V
A
D
V
V
S
K
G
Q
R
V
K
V
K
V
L
S
F
T
G
---
T
K
T
S
L
S
M
K
--
D
V
D
Q
E
T
G
E
D
L
N
--
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
72.73
42%
-126
- C3 -
4NNK
-
A:
[18-93]
--------------------------------------------
I
G
Q
I
V
P
G
K
V
T
K
L
V
P
--
F
--
G
A
F
V
R
V
E
--
E
---
G
I
E
---
G
L
V
H
I
S
E
L
A
E
-
R
H
V
E
---------
V
--
P
D
Q
V
V
A
V
G
D
D
A
M
V
K
V
I
D
I
D
L
E
R
-
R
R
I
S
L
S
L
K
--
Q
A
N
E
D
Y
T
E
E
F
D
--
P
---
A
K
-------
Y
----
G
---------
M
A
D
S
Y
D
E
Q
G
N
Y
I
F
P
E
-
G
F
D
A
E
T
N
E
W
L
E
G
F
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
72.19
42%
-118
- C3 -
4NNG
-
A:
[16-91]
--------------------------------------------
I
G
Q
I
V
A
G
K
V
T
K
L
V
P
--
F
--
G
A
F
V
R
V
E
--
E
---
G
I
E
---
G
L
V
H
I
S
E
L
A
E
-
R
H
V
E
---------
V
--
P
D
Q
V
V
A
V
G
D
D
A
M
V
K
V
I
D
I
D
L
E
R
-
R
R
I
S
L
S
L
K
--
Q
A
N
E
D
Y
T
E
E
F
D
--
P
---
A
K
-------
Y
----
G
---------
M
A
D
S
Y
D
E
Q
G
N
Y
I
F
P
E
-
G
F
D
A
E
T
N
E
W
L
E
G
F
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
70.84
33%
-93
- C3 -
1YZ6
-
IF2A_PYRAB
A:
[12-114]
---------------------------------------------
G
E
F
V
V
A
T
V
K
R
I
H
N
--
Y
--
G
A
F
L
E
L
D
--
E
YP-
G
K
E
---
A
F
M
H
I
S
E
V
A
S
-
T
W
V
R
---------
N
--
I
R
D
Y
L
K
E
G
Q
K
V
V
A
K
V
I
R
V
D
P
R
K
-
G
H
I
D
L
S
L
R
RV
T
Q
Q
Q
R
K
A
K
L
Q
E
F
K
R
---
A
Q
-------
K
----
A
---------
E
N
L
L
K
L
A
A
E
K
L
G
K
D
F
-
E
T
A
W
R
E
V
W
V
P
L
E
E
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
PsiBlast_CBE
69.78
42%
-118
- C3 -
4NNI
2
B:
[16-91]
--------------------------------------------
I
G
Q
I
V
P
G
K
V
T
K
L
V
P
--
F
--
G
A
F
V
R
V
E
--
E
---
G
I
E
---
G
L
V
H
I
S
E
L
A
E
-
R
H
V
E
---------
V
--
P
D
Q
V
V
A
V
G
D
D
A
M
V
K
V
I
D
I
D
L
E
R
-
R
R
I
S
L
S
L
K
--
Q
A
N
E
D
Y
T
E
E
F
D
--
P
---
A
K
-------
Y
----
G
---------
M
A
D
S
Y
D
E
Q
G
N
Y
I
F
P
E
-
G
F
D
A
E
T
N
E
W
L
E
G
F
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
69.51
42%
-117
- C3 -
4NNI
2
RS1_MYCTU
A:
[16-91]
--------------------------------------------
I
G
Q
I
V
P
G
K
V
T
K
L
V
P
--
F
--
G
A
F
V
R
V
E
--
E
---
G
I
E
---
G
L
V
H
I
S
E
L
A
E
-
R
H
V
E
---------
V
--
P
D
Q
V
V
A
V
G
D
D
A
M
V
K
V
I
D
I
D
L
E
R
-
R
R
I
S
L
S
L
K
--
Q
A
N
E
D
Y
T
E
E
F
D
--
P
---
A
K
-------
Y
----
G
---------
M
A
D
S
Y
D
E
Q
G
N
Y
I
F
P
E
-
G
F
D
A
E
T
N
E
W
L
E
G
F
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
HHSearch
69.31
33%
-112
- C3 -
2K52
-
A:
[3-74]
------------------------------------------
V
E
P
G
K
F
Y
K
G
V
V
T
R
I
E
K
--
Y
--
G
A
F
I
N
L
N
--
E
---
Q
V
R
---
G
L
L
R
P
R
D
M
I
S
-
L
R
---------------
L
E
N
L
N
V
G
D
E
I
I
V
Q
A
I
D
V
R
P
E
K
-
R
E
I
D
F
K
Y
I
--
P
L
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
64
Fugue
69.03
23%
-64
- C3 -
2BX2
4
RNE_ECOLI
L:
[1-517]
AHIEGRHMKRMLINATQQEELRVALVDGQRLYDLDIESPGHE
Q
K
K
A
N
I
Y
K
G
K
I
T
R
I
E
P
SL
E
--
A
A
F
V
D
Y
G
--
A
---
E
R
H
---
G
F
L
P
L
K
E
I
A
R
-
E
Y
F
P
---------
R
PN
I
K
D
V
L
R
E
G
Q
E
V
I
V
Q
I
D
K
E
E
R
G
N
-
K
G
A
A
L
T
T
F
--
I
S
L
A
G
S
Y
L
V
L
M
--
P
---
N
N
-------
P
----
R
---------
A
G
G
I
S
R
R
I
E
L
K
E
A
L
A
-
S
L
E
L
P
E
G
M
G
L
I
V
R
T
AGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAM
63
Fugue
68.77
32%
-97
- C3 -
1SMX
-
RNE_ECOLI
A:
[39-125]
---------------------------------------------
A
N
I
Y
K
G
K
I
T
R
I
E
P
--
S
LE
A
A
F
V
D
Y
G
--
A
---
E
R
H
---
G
F
L
P
L
K
E
I
A
R
-
E
Y
F
P
A
N
Y
S
AHGRP
N
--
I
K
D
V
L
R
E
G
Q
E
V
I
V
Q
I
D
K
E
E
R
G
N
-
K
G
A
A
L
T
T
F
--
I
S
L
A
G
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
68.53
42%
-123
- C3 -
4NNH
-
RS1_MYCS2
A:
[16-91]
--------------------------------------------
I
G
Q
I
V
P
G
K
V
T
K
L
V
P
--
F
--
G
A
F
V
R
V
E
--
E
---
G
I
E
---
G
L
V
H
I
S
E
L
S
E
-
R
------------
V
--
P
D
Q
V
V
Q
V
G
D
D
A
M
V
K
V
I
D
I
D
L
E
R
-
R
R
I
S
L
S
L
K
--
Q
A
N
E
D
Y
T
E
E
F
D
--
P
---
S
K
-------
Y
----
G
---------
M
A
D
S
Y
D
E
Q
G
N
Y
I
F
P
E
-
G
F
D
P
E
T
N
E
W
L
E
G
F
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------