@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs0316: (2015-11-30 )
MEIIVADQIIMGLILNAGDAKQHIYQALKLAKEGNFAESKIEIELADSALLEAHNLQTQFLAQEAGGTRTDISALFIHSQDHLMTSITEINLIKEIIDLRQELHIQK
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20......------..30........40----........50........60........70........80----.........90........100.....----------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
E
I
I
V
A
D
Q
I
I
M
G
L
ILNA
G
D
A
K
Q
H
I
Y
Q
A
------
L
K
L
AKEGNFAE
S
K
I
----
E
I
E
LAD
S
A
L
L
E
A
HN
L
Q
T
Q
F
L
A
Q
EAGGTRT
D
I
S
A
L
F
I
HSQ-----
D
H
L
M
T
S
I
T
E
I
N
L
I
K
E
I
I
D
L
R
Q
E
LHIQK----------------------------------------------
27
HHSearch
94.29
43%
-68
- C3 -
3K1S
5
?
A:
[5-108]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
T
A
E
Q
I
P
F
Q
L
I
L
N
S
G
N
A
R
S
F
A
M
E
A
------
L
Q
F
A
K
Q
G
K
M
A
E
A
D
E
----
A
M
V
K
A
K
E
A
I
N
E
A
H
H
F
Q
T
E
L
I
Q
S
E
A
R
G
E
K
T
E
I
S
V
L
L
I
H
A
Q
-----
D
H
L
M
N
A
I
T
V
K
E
L
A
A
E
F
I
D
L
Y
K
K
L
E
A
K
G
----------------------------------------------
4
PsiBlast_PDB
93.63
44%
-69
- C3 -
3K1S
5
?
A:
[7-105]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
A
E
Q
I
P
F
Q
L
I
L
N
S
G
N
A
R
S
F
A
M
E
A
------
L
Q
F
A
K
Q
G
K
M
A
E
A
D
E
----
A
M
V
K
A
K
E
A
I
N
E
A
H
H
F
Q
T
E
L
I
Q
S
E
A
R
G
E
K
T
E
I
S
V
L
L
I
H
A
Q
-----
D
H
L
M
N
A
I
T
V
K
E
L
A
A
E
F
I
D
L
Y
K
K
L
E
A
K
G
----------------------------------------------
26
HHSearch
91.12
40%
-77
- C3 -
1WCR
-
PTQA_ECOLI
A:
[2-102]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
L
E
E
V
V
M
G
L
I
I
N
S
G
Q
A
R
S
L
A
Y
A
A
------
L
K
Q
A
K
Q
G
D
F
A
A
A
K
A
----
M
M
D
Q
S
R
M
A
L
N
E
A
H
L
V
Q
T
K
L
I
E
G
D
A
G
E
G
K
M
K
V
S
L
V
L
V
H
A
Q
-----
L
H
L
M
T
S
M
L
A
R
E
L
I
T
E
L
I
E
L
H
E
K
L
K
A
------------------------------------------------
25
HHSearch
90.95
34%
-73
* C3 *
2E2A
-
PTLA_LACLL
A:
[1-104]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
R
E
E
M
T
L
L
G
F
E
I
V
A
Y
A
G
D
A
R
S
K
L
L
E
A
------
L
K
A
A
E
N
G
D
F
A
K
A
D
S
----
L
V
V
E
A
G
S
C
I
A
E
A
H
S
S
Q
T
G
M
L
A
R
E
A
S
G
E
E
L
P
Y
S
V
T
M
M
H
G
Q
-----
L
H
L
M
T
T
I
L
L
K
D
V
I
H
H
L
I
E
L
Y
K
R
G
A
-------------------------------------------------
39
Fugue
90.87
35%
-69
- C3 -
1E2A
1
PTLA_LACLL
A:
[1-102]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
R
E
E
M
T
L
L
G
F
E
I
V
A
Y
A
G
D
A
R
S
K
L
L
E
A
------
L
K
A
A
E
N
G
D
F
A
K
A
D
S
----
L
V
V
E
A
G
S
C
I
A
E
A
H
S
S
Q
T
G
M
L
A
R
E
A
S
G
E
E
L
P
Y
S
V
T
M
M
H
G
Q
-----
D
H
L
M
T
T
I
L
L
K
D
V
I
H
H
L
I
E
L
Y
K
R
---------------------------------------------------
22
PsiBlast_CBE
90.68
41%
-76
- C3 -
2LRL
1
PTQA_ECOLI
C:
[5-101]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
V
V
M
G
L
I
I
N
S
G
Q
A
R
S
L
A
Y
A
A
------
L
K
Q
A
K
Q
G
D
F
A
A
A
K
A
----
M
M
D
Q
S
R
M
A
L
N
E
A
H
L
V
Q
T
K
L
I
E
G
D
A
G
E
G
K
M
K
V
S
L
V
L
V
H
A
Q
-----
L
H
L
M
T
S
M
L
A
R
E
L
I
T
E
L
I
E
L
H
E
K
L
K
A
------------------------------------------------
1
PsiBlast_PDB
90.06
41%
-75
- C3 -
1WCR
-
PTQA_ECOLI
A:
[5-101]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
V
V
M
G
L
I
I
N
S
G
Q
A
R
S
L
A
Y
A
A
------
L
K
Q
A
K
Q
G
D
F
A
A
A
K
A
----
M
M
D
Q
S
R
M
A
L
N
E
A
H
L
V
Q
T
K
L
I
E
G
D
A
G
E
G
K
M
K
V
S
L
V
L
V
H
A
Q
-----
L
H
L
M
T
S
M
L
A
R
E
L
I
T
E
L
I
E
L
H
E
K
L
K
A
------------------------------------------------
3
PsiBlast_PDB
89.89
41%
-75
- C3 -
2LRL
1
PTQA_ECOLI
A:
[5-101]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
V
V
M
G
L
I
I
N
S
G
Q
A
R
S
L
A
Y
A
A
------
L
K
Q
A
K
Q
G
D
F
A
A
A
K
A
----
M
M
D
Q
S
R
M
A
L
N
E
A
H
L
V
Q
T
K
L
I
E
G
D
A
G
E
G
K
M
K
V
S
L
V
L
V
H
A
Q
-----
L
H
L
M
T
S
M
L
A
R
E
L
I
T
E
L
I
E
L
H
E
K
L
K
A
------------------------------------------------
2
PsiBlast_PDB
89.68
41%
-79
- C3 -
2WY2
1
PTQA_ECOLI
A:
[5-101]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
V
V
M
G
L
I
I
N
S
G
Q
A
R
S
L
A
Y
A
A
------
L
K
Q
A
K
Q
G
D
F
A
A
A
K
A
----
M
M
D
Q
S
R
M
A
L
N
E
A
H
L
V
Q
T
K
L
I
E
G
D
A
G
E
G
K
M
K
V
S
L
V
L
V
H
A
Q
-----
L
H
L
M
T
S
M
L
A
R
E
L
I
T
E
L
I
E
L
H
E
K
L
K
A
------------------------------------------------
6
PsiBlast_PDB
89.03
40%
-77
- C3 -
2LRK
-
PTQA_ECOLI
A:
[5-101]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
V
V
M
G
L
I
I
N
S
G
Q
A
R
S
L
A
Y
A
A
------
L
K
Q
A
K
Q
G
D
F
A
A
A
K
A
----
M
M
D
Q
S
R
M
A
L
N
E
A
H
L
V
Q
T
K
L
I
E
G
D
A
G
E
G
K
M
K
V
S
L
V
L
V
E
A
Q
-----
L
H
L
M
T
S
M
L
A
R
E
L
I
T
E
L
I
E
L
H
E
K
L
K
A
------------------------------------------------
5
PsiBlast_PDB
88.89
40%
-83
- C3 -
2WWV
-
PTQA_ECOLI
A:
[5-101]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
V
V
M
G
L
I
I
N
S
G
Q
A
R
S
L
A
Y
A
A
------
L
K
Q
A
K
Q
G
D
F
A
A
A
K
A
----
M
M
D
Q
S
R
M
A
L
N
E
A
H
L
V
Q
T
K
L
I
E
G
D
A
G
E
G
K
M
K
V
S
L
V
L
V
E
A
Q
-----
L
H
L
M
T
S
M
L
A
R
E
L
I
T
E
L
I
E
L
H
E
K
L
K
A
------------------------------------------------
21
PsiBlast_CBE
88.82
41%
-77
- C3 -
2WY2
1
PTQA_ECOLI
C:
[5-101]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
V
V
M
G
L
I
I
N
S
G
Q
A
R
S
L
A
Y
A
A
------
L
K
Q
A
K
Q
G
D
F
A
A
A
K
A
----
M
M
D
Q
S
R
M
A
L
N
E
A
H
L
V
Q
T
K
L
I
E
G
D
A
G
E
G
K
M
K
V
S
L
V
L
V
H
A
Q
-----
L
H
L
M
T
S
M
L
A
R
E
L
I
T
E
L
I
E
L
H
E
K
L
K
A
------------------------------------------------
7
PsiBlast_PDB
88.29
39%
-56
- C3 -
1E2A
1
PTLA_LACLL
A:
[13-101]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
A
Y
A
G
D
A
R
S
K
L
L
E
A
------
L
K
A
A
E
N
G
D
F
A
K
A
D
S
----
L
V
V
E
A
G
S
C
I
A
E
A
H
S
S
Q
T
G
M
L
A
R
E
A
S
G
E
E
L
P
Y
S
V
T
M
M
H
G
Q
-----
D
H
L
M
T
T
I
L
L
K
D
V
I
H
H
L
I
E
L
Y
K
R
---------------------------------------------------
23
PsiBlast_CBE
87.72
39%
-58
- C3 -
1E2A
1
PTLA_LACLL
C:
[13-101]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
A
Y
A
G
D
A
R
S
K
L
L
E
A
------
L
K
A
A
E
N
G
D
F
A
K
A
D
S
----
L
V
V
E
A
G
S
C
I
A
E
A
H
S
S
Q
T
G
M
L
A
R
E
A
S
G
E
E
L
P
Y
S
V
T
M
M
H
G
Q
-----
D
H
L
M
T
T
I
L
L
K
D
V
I
H
H
L
I
E
L
Y
K
R
---------------------------------------------------
24
PsiBlast_CBE
87.05
39%
-55
- C3 -
1E2A
1
PTLA_LACLL
B:
[13-101]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
A
Y
A
G
D
A
R
S
K
L
L
E
A
------
L
K
A
A
E
N
G
D
F
A
K
A
D
S
----
L
V
V
E
A
G
S
C
I
A
E
A
H
S
S
Q
T
G
M
L
A
R
E
A
S
G
E
E
L
P
Y
S
V
T
M
M
H
G
Q
-----
D
H
L
M
T
T
I
L
L
K
D
V
I
H
H
L
I
E
L
Y
K
R
---------------------------------------------------
8
PsiBlast_PDB
85.87
38%
-62
- C3 -
2E2A
-
PTLA_LACLL
A:
[13-101]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
A
Y
A
G
D
A
R
S
K
L
L
E
A
------
L
K
A
A
E
N
G
D
F
A
K
A
D
S
----
L
V
V
E
A
G
S
C
I
A
E
A
H
S
S
Q
T
G
M
L
A
R
E
A
S
G
E
E
L
P
Y
S
V
T
M
M
H
G
Q
-----
L
H
L
M
T
T
I
L
L
K
D
V
I
H
H
L
I
E
L
Y
K
R
G
A
-------------------------------------------------
28
HHSearch
85.00
30%
-76
- C3 -
3L8R
-
?
A:
[1-102]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
T
E
E
L
Q
V
A
A
F
E
I
I
L
N
S
G
N
A
R
S
I
V
H
E
A
------
F
D
A
M
R
E
K
N
Y
I
L
A
E
Q
----
K
L
Q
E
A
N
D
E
L
L
K
A
H
Q
A
Q
T
D
L
L
Q
E
Y
A
S
G
T
E
I
K
I
E
I
I
M
V
H
A
Q
-----
D
H
L
M
T
T
M
T
L
R
E
V
A
I
E
M
L
E
L
Y
K
K
---------------------------------------------------
9
PsiBlast_PDB
83.20
34%
-75
- C3 -
3L8R
-
?
A:
[13-99]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
I
L
N
S
G
N
A
R
S
I
V
H
E
A
------
F
D
A
M
R
E
K
N
Y
I
L
A
E
Q
----
K
L
Q
E
A
N
D
E
L
L
K
A
H
Q
A
Q
T
D
L
L
Q
E
Y
A
S
G
T
E
I
K
I
E
I
I
M
V
H
A
Q
-----
D
H
L
M
T
T
M
T
L
R
E
V
A
I
E
M
L
E
L
Y
K
K
---------------------------------------------------
11
PsiBlast_PDB
59.08
27%
-14
- C3 -
1S5T
-
DAPA_ECOLI
A:
[205-276]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
T
A
N
V
A
A
R
D
M
A
Q
M
------
C
K
L
A
A
E
G
H
F
A
E
A
R
V
I
N
Q
R
L
M
P
L
H
N
K
L
F
V
E
P
N
P
I
P
V
K
W
A
C
K
E
L
G
L
V
A
T
D
T
L
R
L
------------
P
M
T
P
I
T
D
S
G
R
E
T
V
R
A
A
L
K
H
A
G
L
L
------------------------------------------------
40
Fugue
57.87
16%
-37
- C3 -
3MKQ
-
?
A:
[2-812]
KLDIKKT
F
S
N
R
S
D
RVK
G
I
D
F
H
PTEP
W
V
L
T
T
L
YSG
R
V
E
I
W
NYETQVEVRSIQVTETPVR
A
G
K
F
IARKN
W
I
I
V
G
S
DDF
R
I
R
V
F
NYNTGEKV
V
D
F
E
AHPDYIR
S
I
A
V
H
PTKP
Y
V
L
S
G
S
DDL
T
V
K
L
W
N
WENNWALE
Q
T
F
E
GHEHFVM
C
V
A
F
NPKDPS
T
F
A
S
G
C
LDR
T
V
K
V
W
S
LGQSTPN
F
T
L
T
TGQERGVN
Y
V
D
Y
YPLPDKP
Y
M
I
T
A
SDDL
T
I
K
I
W
DYQTKSCV
A
T
L
E
GHMSNVS
F
A
V
F
HPTLP
I
I
I
S
G
S
EDG
T
L
K
I
W
NSSTYKVE
K
T
L
N
VGLERSW
C
I
A
T
HPTGRKN
Y
I
A
S
G
F
DN
G
F
T
V
L
S
LGND
E
P
T
L
S
L
D
PV
G
K
L
V
W
S
GGKNAAAS
D
I
F
T
A
V
IRGNEEVEQDEPLSLQ
T
K
E
L
GSVDVFPQ
S
L
A
H
SPNGR
F
V
T
V
V
G
DG
E
Y
V
I
Y
TALAWRNK
A
F
G
K
C
Q
D
F
V
W
G
PDSN
S
Y
A
L
IDETG
Q
I
K
Y
Y
K
NFKEVTS
W
S
V
P
M
HSAID
R
L
F
S
G
A
L
L
G
V
K
S
DG
F
V
Y
F
F
D
WDNGTLVRRIDVNAK
D
V
I
W
S
DNGE
L
V
M
I
V
N
TNSNGDEAS
G
Y
T
L
L
F
N
K
D
A
Y
L
E
A
A
N
N
GNIDDSEGVDEAFDVLYELSESIT
S
G
K
W
VGD
V
F
I
F
T
T
ATN
R
L
N
Y
F
V
GG
K
T
Y
N
LAHYT
K
E
M
Y
L
LGYLARDN
K
V
Y
L
A
D
REV
H
V
Y
G
Y
E
I
S
L
E
V
L
E
F
Q
T
L
T
L
R
GE
I
E
E
A
I
E
NVLPNVEG
K
D
S
L
T
K
I
A
R
F
L
E
G
Q
EY
Y
E
E
A
L
N
I
S
P
D
Q
D
Q
K
F
E
L
A
L
K
V
G
Q
L
T
L
A
R
D
L
L
TDESA
E
M
K
W
R
A
L
G
D
A
S
L
Q
R
F
----
N
F
K
L
A
I
E
A
F
T
N
A
H
D
L
E
S
L
F
L
L
H
S
S
F
N
N
K
E
G
L
V
T
L
A
K
D
A
E
T
T
GK
F
N
L
A
F
N
A
Y
W
I
A
G
D
I
Q
G
A
K
D
L
L
I
K
S
Q
R
F
S
E
A
A
F
L
G
S
T
Y
GLG
D
N
E
V
N
D
I
V
T
K
W
K
E
N
L
I
L
N
GK
N
T
V
S
E
R
VCGAEGLP