@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs0342: (2015-11-30 )
MYQELNDYLEFQSMKYIMPEKAGPLKDDMQTFKAKGQLARNSFTELSRALEQRMDGFKMQRVSNWANQAQVGRPHFWVYYRKDTDQLDDVAVALRVYGVKDSFGVSLEVSFVERQKSDKTLEKQARVLSIPIASPLYFMVQRQGETHREEGNEENRQRLMQEIKSGKVRKVLVKYDVLLTENQSLENILQRLLEGFEKVLPYYQVCQTIS
Atome Classification :
(20 SA)
---------------------------------------......-----...--10.----......-----------.--20.-...-----.----...30...--....--.40----..----------.......------50........60.........----70--..-----------...-.-..80.--------.......90----------.......-----.100.......110.-.---------.......120.....-..130.......140----------------.......150....---...160...-----....-170------..-.------..--....180-----------..---------------.--......190..-...-------.------.200.......210-----------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------M
Y
Q
E
L
N
-----
D
Y
L
--
E
F
Q
----
S
M
K
Y
IM-----------P--EKA-GP
L
-----
K
----
D
D
M
Q
T
F
K
A--KGQL--A
R
-----
N
S
----------
F
T
E
L
S
R
A
------
L
E
Q
R
M
D
G
F
K
M
Q
-
R
V
S
NWANQA----QV--GR-----------
P
H
F
-
W
-
V
Y
Y
RK--------DTD
Q
L
D
D
V
A
----------
V
A
L
R
VYG-----VKDSF
G
V
S
L
E
V
S
--
F
-
V
---------
E
RQKSD
K
T
L
E
KQA
R
V
-
L
SIPIAS
P
L
Y
F
M
V
QR----------------QGETHREEG
N
E
E
N
R
---
Q
R
L
M
Q
E
I
KS-----GK
V
R
-
K
--------
V
L
-
V
------
K
Y
--
D
V
L
LT-------------E
N
---------------
Q
--
S
L
E
N
I
L
Q
R
L
L
E
-
G
F
E
-------
K
------
V
L
P
Y
Y
Q
V
C
Q
TIS-------------------------------
21
Fugue
76.59
16%
-34
* C6 *
4UN1
1
?
B:
[21-179]
----------------------------------------
M
S
H
Q
F
-----
S
P
E
--
E
Q
A
----
V
L
R
I
V
Q
-----------
A
--
N
-----
L
-----
P
----
D
S
L
T
P
Y
A
D
--
L
A
E
Q
--
A
G
-----
M
T
----------
E
A
Q
V
L
E
L
------
L
G
R
L
K
A
S
G
A
I
R
-
R
F
G
A
S
I
K
H
Q
----
K
T
--
G
W
-----------
T
H
N
A
M
-
V
A
W
K
V
--------
T
P
D
Q
V
D
D
C
G
----------
R
K
A
A
E
H
S
--------------
H
I
S
--
H
-
V
---------
Y
Y
R
P
S
S
A
P
-----------
D
W
P
Y
E
M
Y
T
M
I
H
G
----------------
R
--------
S
E
A
E
C
---
L
G
V
V
E
D
V
K
R
-----
T
-------------------------------
T
-------------
S
L
---------------
K
--
E
-
H
A
I
L
R
S
L
K
E
-
L
K
K
-------
T
------
S
M
T
Y
F
T
-------------------------------------
23
Fugue
70.28
15%
-48
- C3 -
1PSZ
1
MTSA_STRPN
A:
[18-303]
----------------------KKDTTSGQK
L
K
V
V
A
TN
S
I
I
A
D
I
T
-----
K
N
I
AG
D
K
I
----
D
L
H
S
I
V
-----------
P
--
I
G
Q
-
D
P
H
E
Y
E
P
L
P
----
E
D
V
K
K
T
S
E
--
A
D
L
I
--
F
Y
-----
N
G
INLETGGNA
W
F
T
K
L
V
E
N
------
A
K
K
T
E
N
K
-
D
Y
F
-
A
V
S
D
G
V
D
-------
V
--
I
Y
LEGQNEKGKED
P
H
A
-
W
-
L
N
L
E
N
--------
G
I
I
F
A
K
N
I
A
----------
K
Q
L
S
A
K
D
-----
P
N
N
K
E
F
Y
E
K
N
L
K
--
E
-
Y
---------
T
D
K
L
D
K
L
D
K
E
S
K
D
K
F
-
N
K
I
P
A
E
K
K
L
I
V
T
S
E
G
AF
K
Y
F
S
K
A
Y
G
V
P
S
A
Y
I
W
E
I
N
T
E
E
E
G
T
P
E
Q
I
---
K
T
L
V
E
K
L
R
Q
-----
T
K
V
P
-------------------------
S
L
F
V
-------------
E
S
---------------
S
--
V
D
D
R
P
M
K
T
V
S
Q
-
D
T
------------------
N
I
P
I
Y
A
Q
I
F
T
DSIAEQGKEGDS
Y
Y
S
M
M
K
Y
N
L
D
K
I
A
E
G
L
A
K
24
Fugue
69.99
20%
-17
- C4 -
3GN6
6
?
A:
[22-321]
FNPWT
D
A
A
L
D
T
IVNQALTL
Y
A
E
M
R
V
V
PAH
H
D
A
F
L
A
A
I
D
T
V
S
A
K
L
R
-----
V
L
P
--
G
F
L
----
S
L
A
L
K
Q
MSGDSTMVKNY
P
--
E
T
Y
K
G
V
L
-----
A
----
T
A
Y
L
D
G
V
A
--
A
G
T
Q
--
P
Y
F
Y
---
N
L
----------
F
V
R
F
A
D
G
------
R
A
A
R
A
A
G
F
E
A
L
-
F
E
T
H
I
H
P
L
L
----
H
A
M-
A
D
-----------
G
P
E
-
L
-
L
A
Y
R
A
V
L
Q
SV
V
A
G
D
R
H
A
I
Y
R
G
A
----------
E
E
I
R
S
F
L
R
R
PVE
L
P
E
R
E
T
V
T
V
E
N
H
--
V
M
V
---------
P
E
D
K
H
A
A
W
E
P
Q
V
A
I
L
-
L
Q
V
A
Q
D
T
---
F
E
P
Q
D
----------------
E
P
S
G
V
G
L
P
G
A
R
D
N
R
Y
Y
R
K
A
L
S
T
E
I
L
R
N
AHAD
G
G
L
R
-
A
--------
Y
I
M
H
------
G
V
W
E
S
V
W
D
H
-------------
E
N
---------------
S
--
H
L
D
P
R
F
L
A
A
A
G
-
P
V
G
-------
A
AAVVGP
V
E
P
F
Y
L
T
R
R
L
V
V
A
D-----------------------------
20
Fugue
69.86
17%
-9
- C4 -
3ZF8
2
MNN9_YEAST
A:
[5-304]
-H
I
A
H
Y
DLNKLHSTSEAAVNK
E
H
I
L
I
L
T
PMQTFH
Q
Q
Y
W
D
N
L
L
Q
L
N
-----
Y
P
R
--
E
L
I
----
E
L
G
F
I
T
-----------
P
RT
A
T
G
-
D
L
A
-----
L
----
K
K
L
E
N
A
I
K
--
K
V
Q
T
DK
K
T
-----
Q
R
----------
F
S
K
I
T
I
L
R
Q
NSA
L
D
V
Q
K
E
R
R
A
A
M
A
-
L
A
R
N
E
L
L
F
S
----
T
I
--
G
P
-----------
H
T
S
-
W
-
V
L
W
L
N
ADIIET--
P
P
S
L
I
Q
D
M
T
K
HNKA
I
L
A
A
N
I
Y
Q
R
F
Y
D
-----
E
E
K
K
Q
P
S
I
R
P
Y
D
--
F
-
N
---------
N
W
Q
E
S
D
T
G
L
E
I
A
S
Q
M
-
G
D
D
E
I
I
V
E
G
Y
A
E
I
A
T
----------------
Y
R
P
L
M
A
H
F
Y
D
A
N
G
V
---
P
G
E
E
M
A
L
D
G
-----
V
G
G
G
-
C
--------
T
L
-
V
------
K
A
--
E
V
H
R
D
GAMFPNFPFYHLI
E
T
---------------
E
--
G
F
A
K
M
A
K
R
L
---
N
Y
D
V
------
F
------
G
L
P
N
Y
L
V
Y
H
I
E
E
EN-----------------------------
12
HHSearch
61.87
13%
-59
- C5 -
3FPN
-
?
A:
[146-177]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
-
K
--------
M
Q
-
I
------
L
A
--
P
I
V
S
G
-------------
K
K
---------------
G
--
T
H
A
K
T
L
E
D
I
R
K
Q
G
Y
V
-------
R
------
V
R
I
D
R
E
M
R
E
L
T
G
-------------------------------
19
Fugue
58.09
14%
-35
- C2 -
3DUP
4
?
A:
[2-285]
---------------------------------SLS
F
L
K
H
V
Q
D
C
N
THDLS
N
F
V
--
R
F
V
I
EGR
R
V
G
W
V
R
-----------
K
--
A
L
A
-
Q
R
L
-----
K
----
A
H
G
R
V
F
D
V
--
T
R
D
A
--
V
L
L
S
ASL
R
T
----------
P
Q
S
R
T
R
A
------
V
A
D
V
V
D
R
L
A
D
E
G
V
V
P
A
P
R
G
E
L
Y
R
V
N
Q
S
--
W
G
-----------
E
P
T
-
L
M
L
L
D
R
A
--------
V
V
P
T
F
G
V
R
A
----------
Y
G
V
H
L
N
G
-----
Y
V
G
A
-
G
A
D
L
H
L
W
--
I
-
G
---------
R
R
S
P
D
K
S
V
A
P
G
K
L
D
N
M
V
A
G
G
Q
P
A
D
L
S
L
R
Q
N
L
----------------
I
K
E
C
A
E
E
A
D
L
P
E
A
L
---
A
R
Q
A
I
P
V
G
A
-----
I
T
Y
C
M
E
S
PA
G
I
K
P
D
T
L
-
F
------
L
Y
--
D
L
A
L
P
-------------
E
D
F
R
P
H
NTDGEMA
D
F
M
L
W
--
P
A
A
K
V
V
E
A
V
R
T
-
T
E
A
FK
F
N
V
N
L
T
------
V
I
D
F
A
I
R
H
G
L
I
D
PDNEPD
Y
Q
E
I
L
A
G
L
R
GR--------------
4
PsiBlast_PDB
52.71
21%
19
- C5 -
4A1F
2
?
A:
[222-323]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
K
D
S
G
G
I
E
Q
D
A
D
--
I
-
V
L
F
L
Y
R
G
Y
I
Y
Q
M
R
A
E
D
N
K
I
D
K
L
K
K
E
-
G
K
I
E
E
A
Q
E
L
Y
L
K
V
N
E
----------------
E
R
R
I
H
K
Q
N
G
S
I
E
E
A
---
E
I
I
V
A
K
N
R
N
-----
G
A
T
G
-
T
--------
V
Y
-
T
------
R
F
--
N
A
P
F
T
-------------
R
Y
---------------
E
--
D
M
P
-
I
D
S
H
L
---------------------------------------------------------------
2
PsiBlast_PDB
52.49
37%
-44
- C5 -
3AL3
1
A:
[120-170]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
---
K
K
I
Q
Q
R
Q
E
S
-----
G
I
V
E
-
G
--------
A
F
-
S
------
G
W
--
K
V
I
L
H
-------------
V
D
---------------
Q
--
S
R
E
A
G
F
K
R
L
L
Q
S
G
G
A
-------
K
------
V
L
P
G
H
S
V
P
L
F
K
E
-------------------------------
1
PsiBlast_PDB
52.01
37%
-40
- C5 -
3AL2
1
A:
[120-170]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
---
K
K
I
Q
Q
R
Q
E
S
-----
G
I
V
E
-
G
--------
A
F
-
S
------
G
W
--
K
V
I
L
H
-------------
V
D
---------------
Q
--
S
R
E
A
G
F
K
R
L
L
Q
S
G
G
A
-------
K
------
V
L
P
G
H
S
V
P
L
F
K
E
-------------------------------
22
Fugue
46.39
17%
37
- C6 -
1RLH
1
?
A:
[5-155]
----------------------------------------------------------------------------------------------------
H
H
H
H
H
H
S
--
S
G
L
V
--
P
R
-----
G
S
----------
H
M
V
I
P
A
E
------
A
------------------
N
I
----
I
V
--
G
Y
-----------
S
H
F
------
I
K
--------
T
V
E
D
L
N
E
I
-----------
I
R
T
H
V
P
G
-----
S
K
Y
G
I
G
F
S
E
A
S
G
DR
L
-
I
---------
R
Y
D
G
N
D
D
D
L
V
K
A
C
I
E
-
N
I
R
R
I
S
A
G
H
T
F
V
I
L
I
----------------
R
N
A
Y
P
I
N
I
L
N
A
V
K
M
---
C
Q
E
V
G
S
I
F
A
-----
A
T
A
N
-
P
--------
L
Q
-
I
------
I
V
--
Y
K
G
E
R
-------------
G
N
---------------
G
--
V
L
G
V
I
D
G
Y
S
P
V
-
G
V
E
-------
S
-------------------------------------------------
25
Fugue
45.57
9%
-7
* C4 *
4M6G
3
?
A:
[8-221]
---------------------------------IAG
M
V
V
F
I
D
P
G
H
-----
N
G
A
--
N
D
A
----
S
I
G
R
Q
V
-----------
P
--
T
G
R
-
G
G
T
-----
K
----
N
C
Q
A
S
G
T
S
T
N
S
G
Y
P
--
E
H
-----
T
F
----------
T
W
E
T
G
L
R
------
L
R
A
A
L
N
A
L
G
V
R
-
T
A
L
S
R
G
N
D
N
----
A
L
--
G
P
-----------
C
-----
V
D
E
R
A
--------
N
M
A
N
A
L
R
P
N
----------
A
I
V
S
L
H
A
-----
D
G
G
P
A
S
G
R
G
F
H
V
--
N
-
Y
---------
S
A
P
P
L
N
A
I
Q
A
G
P
S
V
Q
-
F
A
R
I
M
R
D
Q
L
Q
A
S
G
I
P
----------------
K
A
N
Y
I
G
Q
D
G
L
Y
G
R
S
---
D
L
A
G
L
N
L
A
Q
-----
Y
P
S
I
-
L
--------
V
E
-
L
GNMKN
P
A
D
--
S
A
L
M
E
-------------
S
A
---------------
E
--
G
R
Q
K
Y
A
N
A
L
V
R
-
G
V
A
-------
G
------
F
L
A
T
Q
--------------------------------------
15
HHSearch
43.44
8%
-83
* C5 *
1X52
-
A:
[43-81]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
---
K
Q
V
E
K
A
N
E
A
-----
M
A
I
D
-
T
--------
L
L
-
I
------
S
D
--
E
L
F
R
H
-------------
Q
D
---------------
V
--
A
T
R
S
R
Y
V
R
L
V
D
-
S
V
K
-------
E
------
N
A
G
T
V
R
I
F
S
S
L
H
-------------------------------
3
PsiBlast_PDB
41.03
24%
15
- C5 -
1TZ9
-
UXUA_ENTFA
A:
[80-172]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
-----------
D
H
Y
-
I
-
D
N
Y
R
Q
--------
T
L
R
N
L
G
K
C
G
----------
I
S
L
V
C
Y
S
-----
F
K
P
I
F
G
W
A
K
T
D
L
--
A
-
Y
---------
E
N
E
D
G
S
L
S
L
L
F
D
Q
A
V
-
V
E
N
M
Q
P
E
D
M
Y
Q
L
I
H
S
-------------------------
W
E
E
E
R
---
L
Q
Q
F
Q
E
L
K
A
-----
M
Y
A
G
-
V
--------
T
E
-
E
------
D
L
--
V
E
N
L
R
-------------
Y
F
---------------
L
--
E
R
V
I
P
V
C
E
E
E
N
-
I
K
M
-------
G
------
I
H
P
D
D
P
P
W
E
I
F
G
-------------------------------
5
PsiBlast_PDB
37.33
38%
35
- C5 -
1Z6M
-
?
A:
[47-77]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
S
E
---
E
L
L
A
Q
S
V
K
S
-----
G
K
V
E
-
R
--------
I
I
-
K
------
L
F
--
D
---
K
-------------
E
K
---------------
E
--
S
L
Q
R
G
N
V
M
H
H
Y
-
I
D
Y
-------
S
------
A
P
E
Q
A
L
S
A
L
H
K
M
-------------------------------
18
Fugue
31.56
16%
17
- C5 -
1KVE
-
?
?:
[19-81]
---------------------------------------------------------
W
----
S
L
R
W
R
M
-----------
Q
--
K
S
T
-
T
I
A
-----
A
I
A
G
C
S
G
A
A
T
F
-----
G
G
L
--
A
G
-----
G
I
----------
V
G
C
I
A
A
G
------
I
L
A
I
L
Q
G
F
E
V
N
-
W
H
N
G
G
G
G
D
R
----
S
N
P
V-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
30.83
28%
51
- C5 -
2VVY
-
B14_VACCW
A:
[27-66]
----------------------------------------
R
Q
C
L
T
-----
E
Y
I
--
Y
W
S
----
S
Y
A
Y
R
N
-----------
R
--
Q
C
A
-
G
Q
L
-----
Y
----
S
T
L
L
S
F
R
D
--
D
-----
A
E
-----
L
V
----------
F
I
D
I
R
E
L
------
V
K
N
M
P
W
D
D
V
K
D
-
C
A
E
I
I
R
C
Y
I
----
P
D
--
E
Q
-----------
K
T
I
-
R
-
E
I
S
A
I
--------
I
G
L
C
A
Y
A
A
T
----------
Y
W
G
G
E
D
H
-----
P
T
S
N
S
L
N
A
L
F
V
M
--
L
-
E
---------
M
L
N
Y
V
D
Y
N
I
I
F
R
R
M
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
27.64
18%
46
- C5 -
3QB2
2
?
A:
[7-66]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
E
H
Y
Q
---
K
M
F
Q
K
E
V
T
V
-----
N
D
L
K
-
K
--------
Y
L
-
I
------
G
S
--
D
K
E
Y
R
-------------
I
T
---------------
R
RD
S
Y
M
G
D
I
S
D
P
E
V
-
I
L
E
Y------
G
------
V
Y
P
A
F
I
K
G
Y
T
Q
L
-------------------------------
7
HHSearch
25.82
18%
113
- C5 -
2X43
-
?
S:
[20-64]
-------------------------------------------------------------------
V
-----------
H
--
D
K
I
-
Q
E
L
-----
K
-------
D
D
V
G
N
--
K
A
A
E
--
V
R
-----
D
A
----------
V
S
S
T
V
E
S
------
I
K
D
K
L
S
G
G
S
S
S
-
R
A
S
S
Y
T
L
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
25.69
31%
75
- C5 -
1BM4
-
A:
[7-32]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
Q
G
-------------
P
N
---------------
E
--
S
P
S
A
F
L
E
R
L
K
E
-
A
Y
R
-------
R
------
Y
T
P
Y
---------------------------------------
9
HHSearch
20.90
33%
200
- C5 -
3M1F
-
?
V:
[2-16]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
N
E
D
H
---
S
K
L
M
E
Q
I
R
Q
-----
G
V
K
L
-
K
--------
S
A
--------------------------------------------------------------------------------------------------------------------------