@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs0346: (2015-11-30 )
MTEQIKLSKSDRQKVWWRSQFLQGSWNYERMQNMGWAYALIPALKKLYTTKEDRAAALERHMEFFNTHPYVAAPIIGVTLALEEEKASGTPVEDKAIQGVKIGMMGPLAGIGDPVFWFTVRPILGALGASLASAGNILGPIIFFVGWNLIRMSFLWYTQELGYKSGKEITKDMSGGILQDITKGASILGMFILAVLVKRWVAINFTVDLPKKTLSEGAYINFPKDHVSGQQLHDILGQVQSGLSLDKMQPQTLQGQLDSLIPGLAGLLLTFFCMWLLKKKVSPITIIIGLFIVGILARLAGVM
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20--........30----.....--...40----------........50........----60........70.....----------...80-.........90........100-..-------.-.....110...-----....120......----.130......--.-140..----.....150.......160.......170.......180.......190.......200..----.....210.......220..---.--....230.......240.......250.......-260......----.270.......280--......-.290.......300.---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MT
E
Q
I
KLSKSD
R
Q
K
V
W
W
R
S
Q
F
--LQGSW
N
Y
E
R
M
----
Q
NMG
W
--
A
Y
A
L
I
----------
P
A
L
K
K
L
YTT
K
E
D
R
A
A
A
L
E
----
R
H
M
E
F
F
NTHPYVAA
P
I
I
----------
G
V
T
L
--
A
L
EEEKASGTPVEDKAIQ
G
V
K
--
I
G-------M-MGPLAGIGD
P
V
-----
F
W
F
T
V
R
P
I
L
G
A
L
G
----
A
S
L
A
SAG
N
I
L
--
G
-
P
I
I
F
F
----
V
G
W
N
L
I
R
M
S
F
L
W
Y
T
Q
E
LGYKS
G
K
E
I
T
K
D
MSG
G
I
L
Q
D
I
T
K
G
A
S
I
L
G
M
F
I
L
A
V
L
V
K
R
W
V
A
I
N
----
F
T
VDL
P
K
K
T
LSEG
A
Y
INF
P
K
---D--HVS
G
Q
Q
L
H
D
I
L
G
Q
V
Q
SGLSLDKMQ
P
Q
T
L
Q
G
Q
L
D
S
-
L
I
P
G
L
A
G
L
L
----
L
T
F
F
C
M
W
L
L
KKKVS--P
I
T
I
I
I
-
G
L
F
I
V
G
I
L
A
R
L
AGVM---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
84.59
17%
-73
- C1 -
3ZPJ
-
?
A:
[1-356]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
T
T
L
E
E
I
N
L
L
V
E
R
GY
Y
E
E
A
L
A
K
V
YEIED
P
I
E
Q
V
Q
V
L
T
K
I
V
V
T
I
Y
Q
H
D
G
P
M
E
W
I
P
S
I
--
M
E
D
A
M
Y
I
A
K
K
LRD
P
A
N
K
A
V
--
A
Y
S
I
I
A
S
T
L
A
I
M
EY
E
E
D
A
M
D
F
F
N
R
A
I
D
E
A
N
E
I
E
----
S
P
I
E
K
G
M
V
L
S
T
L
A
Y
H
L
A
I
A
GY
P
D
N
A
L
E
I
F
N
I
--
A
F
D
T
I
I
G
A
E
T
S
Y
T
H
K
V
D
G
I
L
R
--
I
G
-------
D
-
L
L
E
K
A
G
D
T
L
P
S
NEA
M
D
F
Y
K
M
A
F
D
I
F
D
K
L
H
V
N
Q
R
A
A
I
V
E
K
K
I
E
L
--
A
-
K
T
V
Y
D
----
V
G
L
P
Q
I
R
A
A
L
L
---
K
G
K
N
H
Y
A
L
A
I
I
K
K
K
Y
S
G
--------
V
M
R
L
I
G
E
L
E
V
A
L
W
M
K
R
----------
V
N
N
M
E
Y
L
D
V
V
D
K
A
F
E
C
C
E
S
PRF
T
--
D
V
N
V
Q
H
I
A
R
L
L
T
E
L
G
N
L
R
R
A
L
K
F
A
K
E
I
Q
N
I
H
K
R
S
E
A
L
K
A
I
A
L
E
L
----
V
R
R
K
K
F
E
E
V
K
K
I
I
E
--
S
I
P
D
---
P
K
I
R
E
E
A
L
N
E
I
G
T
I
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
Fugue
83.04
18%
-69
* C2 *
2PO4
-
RPOLV_BPN4
A:
[11-1104]
G
I
D
A
V
Y
PSLVGTADSKAEGIKN
Y
F
K
L
S
F
TLPEEQKSRTVGSEA
P
L
K
D
V
A
Q
A
L
SS
R
A
R
Y
E
L
F
T
EKETANPAFN
G
E
V
I
K
R
Y
K
E
L
M
E
H
G
E
G
I
A
D
I
L
R
S
R
L
A
K
F
L
N
TKD
V
G
K
R
F
A
Q
GTEANRWVGGKLLNI
V
E
Q
D
GD
T
F
K
Y
N
E
Q
L
L
Q
T
A
V
L
A
G
L
Q
W
R
L
TATSNTAIKD
A
K
D
V
A
A
I
T
GIDQALLP
E
G
L
V
E
Q
F
D
T
G
MT
L
T
E
A
V
S
S
L
A
Q
K
I
E
S
Y
W
GLSRNPNAPLGYT
K
G
I
P
T
A
M
A
A
E
I
L
A
A
F
V
E
S
TD
V
V
E
N
I
V
D
MSEIDPDNK
K
T
I
G
L
Y
T
I
TELDSFD
P
I
N
S
F
PT
A
I
E
E
A
V
L
V
NPT
E
K
M
F
F
GDDIPPVANTQLRNPAVRNT
P
E
Q
K
A
A
L
K
A
E
Q
A
T
E
F
Y
V
H
T
P
M
V
Q
F
Y
E
T
L
G
K
D
R
I
L
E
L
M
G
AGTLNKELLN
D
N
H
A
K
S
L
E
G
K
N
R
S
V
E
D
S
Y
N
Q
L
F
S
V
I
E
Q
V
R
A
Q
SEDIST
V
P
I
H
Y
A
Y
N
M
T
R
V
G
R
M
Q
M
---------
L
G
K
Y
N
P
Q
S
A
----
K
L
V
R
E
--
A
--
I
L
----------
P
T
K
A
T
L
D
L
S
N
Q
N
N
------------
E
D
F
S
A
F
Q
L
G
L
A
Q
A
L
----------
D
I
K
V
--
H
T
M
T
R
E
V
M
S
D
E
L
T
K
L
L
E
G
N
L
K
P
A
I
D
-------
M
-
M
V
E
F
N
T
T
G
S
L
-----------------
P
E
----
N
A
V
D
V
L
N
T
A
L
--
G
-
D
R
K
S
F
----
V
A
L
----
M
A
L
M
E
Y
S
R
Y
L
V
A
E
D
K
S
A
F
V
T
P
L
Y
V
E
A
D
G
V
T
N
G
P
I
N
A
M
M
L
M
T
G
G
L
F
T
P
D
W
I
R
N
I
A
K
G
G
L
F
I
G
S
P
N
K
T
M
N
E
H
R
S
T
A
D
N
N
---
D
L
Y
Q
A
S
T
N
A
L
M
E
S
L
G
K
L
R
S
N
Y
A
S
N
----
M
P
I
Q
S
Q
I
D
S
-
L
L
S
L
M
D
L
F
L
PDIN
L
G
E
N
G
A
L
E
L
K
R
G
I
A
KN
P
L
T
I
T
I
Y
G
S
G
A
R
G
I
A
G
K
L
V
S
S
V
T
D
A
I
Y
E
R
M
S
D
V
L
K
A
R
A
K
DPNIS
A
A
M
A
M
FGKQAAS
E
A
H
A
E
E
L
L
A
R
F
L
K
D
M
E
T
L
T
S
T
V
P
V
K
R
KG
V
L
E
L
Q
S
TGTGAKGKINPK
T
Y
T
I
K
G
E
Q
L
K
A
L
Q
E
N
M
L
H
FF
V
E
P
L
R
N
G
I
T
Q
T
VG
E
S
L
V
Y
S
T
E
Q
L
Q
K
A
T
Q
I
Q
S
V
V
L
E
D
M
F
K
Q
R
V
Q
E
K
L
A
E
K
A
K
DPTWKKGDFLT
Q
K
E
L
N
D
I
Q
A
S
L
NNLAPMIETGSQTFYIA
G
S
E
N
AEVANQVLATNLDDRMRVPMSIYAPAQAGVA
G
I
P
F
M
T
I
G
T
G
D
G
M
M
M
Q
T
L
S
T
MKGAPKNTLKIFD
G
M
N
I
G
LND
I
T
D
A
S
R
K
A
N
E
A
V
Y
T
S
W
Q
GN
P
I
K
N
V
Y
E
S
Y
A
K
F
M
K
N
VDFSKLS
P
E
A
L
E
A
I
G
K
S
A
L
EYDQRENAT
V
D
D
I
A
N
A
A
S
L
I
E
R
N
L
R
N
I
A
L
G
V
D
I
R
H
K
V
L
D
K
V
N
L
S
I
DQMAAVG
A
P
Y
Q
NNGKIDLSNMT
P
E
Q
Q
A
D
E
L
N
K
L
F
R
E
E
L
E
A
R
K
Q
K
V
A
K
18
PsiBlast_PDB
61.45
24%
-78
- C1 -
1TMO
2
TORA_SHEMA
A:
[208-363]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
H
S
D
T
I
V
L
W
S
N
D
P
Y
K
N
L
Q
V
G
W
N
A
E
T
H
----
E
------
S
F
A
Y
L
----------
A
Q
L
K
E
K
V
K
Q
G
K
I
R
V
I
S
I
D
PVVT
K
T
Q
A
Y
L
G
C
E
Q
L
Y
V
N
P
Q
T
----------
D
V
T
L
M
L
A
I
A
H
E
M
I
S
K
K
L
Y
D
D
K
F
I
Q
G
Y
S
--
L
G
F
E
E
F
V
P
Y
V
-
M
G
T
K
D
G
V
A
K
T
P
-----
E
W
--
A
A
P
I
C
G
V
E
A
----
H
V
I
R
D
L
A
K
T
L
V
K
G
-
R
T
Q
F
M
----
M
G
W
C
I
Q
R
Q
Q
H
G
E
Q
P
Y
W
M
A
A
V
L
A
T
M
I
G
Q
I
G
L
P
G
G
G
I
S
Y
G
H
H
Y
S
S
I
G
V
P
S
S
G
A
A
A
P
G
A
F
P
R
N
----
L
D
E
N
Q
K
P
L
F
D
S
S
D
F
K
G
A
S
S
T
---
I
--
P
V
A
R
W
I
D
A
I
L
E
P
G
K
T
I
D
A
N
G
S
K
V
V
Y
P
D
I
K
M
M
I
F
S
-
G
N
N
P
W
N
H
H
Q
----
D
R
N
R
M
K
Q
A
F
H
K
L
E
C
--
V
V
T
V
D
V
-
N
W
T
A
T
C
R
F
S
D
I
V
L
P
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
43.59
22%
-
- C1 -
3B5Y
-
MSBA_SALTY
A:
[106-221]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
H
M
M
--
G
M
P
V
A
F
F
DKQS
T
G
T
L
L
S
R
I
T
Y
----------
D
S
E
Q
V
A
S
S
S
S
G
A
L
I
T
V
V
R
E
G
A
S
I
I
G
L
F
I
M
M
F
Y
Y
S
W
Q
L
S
I
I
----
L
V
V
L
A
P
--
I
V
S
I
A
I
R
V
V
S
K
R
---
F
--
R
S
I
S
K
N
M
Q
N
T
M
G
Q
V
T
T
S
A
E
------
Q
M
L
K
G
H
K
E
V
-
L
I
F
G
G
Q
E
V
E
----
T
K
R
F
D
K
V
S
N
K
M
R
L
Q
--
G
M
K
M
V
S
-
A
S
S
I
S
D
P
I
I
Q
L
I
A
S
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
41.91
28%
-86
- C3 -
2Z5U
1
KDM1A_HUMAN
A:
[479-532]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
V
Q
R
M
G
--
F
G
-------
N
-
L
N
K
V
V
L
C
F
D
R
V
-----
F
W
D
P
S
V
N
L
F
G
H
V
G
----
S
T
T
A
S
R
G
E
L
---------
F
----
L
F
W
N
L
Y
K
A
P
I
L
L
A
L
V
A
G
E
A
A
G
I
M
E
N
I
S
D
D
V
I
V
G
R
C
L
A
I
L
K
G
I
F
G
S
S
A
V
P
Q
P
K
E
T
V
V
S
R
W
R
----
A
D
P
W
A
R
G
S
Y
S
Y
V
A
A
G
S
S
G
N
D
---
Y
--
D
L
M
A
Q
P
I
T
P
P
I
P
R
L
F
F
A
G
E
H
T
I
R
N
Y
P
A
T
V
H
G
A
L
L
-
S
G
L
R
E
A
G
R
I
----
A
D
Q
F
L
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
41.89
28%
-85
- C3 -
3ABU
1
KDM1A_HUMAN
A:
[479-532]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
V
Q
R
M
G
--
F
G
-------
N
-
L
N
K
V
V
L
C
F
D
R
V
-----
F
W
D
P
S
V
N
L
F
G
H
V
G
----
S
T
T
A
S
R
G
E
L
---------
F
----
L
F
W
N
L
Y
K
A
P
I
L
L
A
L
V
A
G
E
A
A
G
I
M
E
N
I
S
D
D
V
I
V
G
R
C
L
A
I
L
K
G
I
F
G
S
S
A
V
P
Q
P
K
E
T
V
V
S
R
W
R
----
A
D
P
W
A
R
G
S
Y
S
Y
V
A
A
G
S
S
G
N
D
---
Y
--
D
L
M
A
Q
P
I
T
P
P
I
P
R
L
F
F
A
G
E
H
T
I
R
N
Y
P
A
T
V
H
G
A
L
L
-
S
G
L
R
E
A
G
R
I
----
A
D
Q
F
L
G
A
M
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
41.34
22%
-
- C1 -
3B5Z
-
MSBA_SALTY
A:
[106-221]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
H
M
M
--
G
M
P
V
A
F
F
D
KQS
T
G
T
L
L
S
R
I
T
Y
----------
D
S
E
Q
V
A
S
S
S
S
G
A
L
I
T
V
V
R
E
G
A
S
I
I
G
L
F
I
M
M
F
Y
Y
S
W
Q
L
S
I
I
----
L
V
V
L
A
P
--
I
V
S
I
A
I
R
V
V
S
K
R
---
F
--
R
S
I
S
K
N
M
Q
N
T
M
G
Q
V
T
T
S
A
E
------
Q
M
L
K
G
H
K
E
V
-
L
I
F
G
G
Q
E
V
E
----
T
K
R
F
D
K
V
S
N
K
M
R
L
Q
--
G
M
K
M
V
S
-
A
S
S
I
S
D
P
I
I
Q
L
I
A
S
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
41.19
28%
-85
- C3 -
2Z3Y
1
KDM1A_HUMAN
A:
[479-532]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
V
Q
R
M
G
--
F
G
-------
N
-
L
N
K
V
V
L
C
F
D
R
V
-----
F
W
D
P
S
V
N
L
F
G
H
V
G
----
S
T
T
A
S
R
G
E
L
---------
F
----
L
F
W
N
L
Y
K
A
P
I
L
L
A
L
V
A
G
E
A
A
G
I
M
E
N
I
S
D
D
V
I
V
G
R
C
L
A
I
L
K
G
I
F
G
S
S
A
V
P
Q
P
K
E
T
V
V
S
R
W
R
----
A
D
P
W
A
R
G
S
Y
S
Y
V
A
A
G
S
S
G
N
D
---
Y
--
D
L
M
A
Q
P
I
T
P
P
I
P
R
L
F
F
A
G
E
H
T
I
R
N
Y
P
A
T
V
H
G
A
L
L
-
S
G
L
R
E
A
G
R
I
----
A
D
Q
F
L
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
41.14
28%
-77
- C3 -
2UXX
3
KDM1A_HUMAN
A:
[480-533]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
V
Q
R
M
G
--
F
G
-------
N
-
L
N
K
V
V
L
C
F
D
R
V
-----
F
W
D
P
S
V
N
L
F
G
H
V
G
----
S
T
T
A
S
R
G
E
L
---------
F
----
L
F
W
N
L
Y
K
A
P
I
L
L
A
L
V
A
G
E
A
A
G
I
M
E
N
I
S
D
D
V
I
V
G
R
C
L
A
I
L
K
G
I
F
G
S
S
A
V
P
Q
P
K
E
T
V
V
S
R
W
R
----
A
D
P
W
A
R
G
S
Y
S
Y
V
A
A
G
S
S
G
N
D
---
Y
--
D
L
M
A
Q
P
I
T
P
G
P
S
I
P
G
A
P
Q
P
I
P
R
L
F
F
A
G
E
H
T
I
R
N
Y
-
P
A
T
V
H
G
A
L
L
----
S
G
L
R
E
A
G
R
I
A
D
Q
F
L
--
G
A
M
Y
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
40.77
28%
-87
- C3 -
2EJR
1
KDM1A_HUMAN
A:
[479-532]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
V
Q
R
M
G
--
F
G
-------
N
-
L
N
K
V
V
L
C
F
D
R
V
-----
F
W
D
P
S
V
N
L
F
G
H
V
G
----
S
T
T
A
S
R
G
E
L
---------
F
----
L
F
W
N
L
Y
K
A
P
I
L
L
A
L
V
A
G
E
A
A
G
I
M
E
N
I
S
D
D
V
I
V
G
R
C
L
A
I
L
K
G
I
F
G
S
S
A
V
P
Q
P
K
E
T
V
V
S
R
W
R
----
A
D
P
W
A
R
G
S
Y
S
Y
V
A
A
G
S
S
G
N
D
---
Y
--
D
L
M
A
Q
P
I
T
P
P
I
P
R
L
F
F
A
G
E
H
T
I
R
N
Y
P
A
T
V
H
G
A
L
L
-
S
G
L
R
E
A
G
R
I
----
A
D
Q
F
L
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
40.58
28%
-82
- C3 -
3ABT
1
KDM1A_HUMAN
A:
[479-532]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
V
Q
R
M
G
--
F
G
-------
N
-
L
N
K
V
V
L
C
F
D
R
V
-----
F
W
D
P
S
V
N
L
F
G
H
V
G
----
S
T
T
A
S
R
G
E
L
---------
F
----
L
F
W
N
L
Y
K
A
P
I
L
L
A
L
V
A
G
E
A
A
G
I
M
E
N
I
S
D
D
V
I
V
G
R
C
L
A
I
L
K
G
I
F
G
S
S
A
V
P
Q
P
K
E
T
V
V
S
R
W
R
----
A
D
P
W
A
R
G
S
Y
S
Y
V
A
A
G
S
S
G
N
D
---
Y
--
D
L
M
A
Q
P
I
T
P
P
I
P
R
L
F
F
A
G
E
H
T
I
R
N
Y
P
A
T
V
H
G
A
L
L
-
S
G
L
R
E
A
G
R
I
----
A
D
Q
F
L
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
40.48
28%
-70
- C3 -
2DW4
1
KDM1A_HUMAN
A:
[479-532]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
V
Q
R
M
G
--
F
G
-------
N
-
L
N
K
V
V
L
C
F
D
R
V
-----
F
W
D
P
S
V
N
L
F
G
H
V
G
----
S
T
T
A
S
R
G
E
L
---------
F
----
L
F
W
N
L
--
A
P
I
L
L
A
L
V
A
G
E
A
A
G
I
M
E
N
I
S
D
D
V
I
V
G
R
C
L
A
I
L
K
G
I
F
G
S
S
A
V
P
Q
P
K
E
T
V
V
S
R
W
R
----
A
D
P
W
A
R
G
S
Y
S
Y
V
A
A
G
S
S
G
N
D
---
Y
--
D
L
M
A
Q
P
I
T
P
P
I
P
R
L
F
F
A
G
E
H
T
I
R
N
Y
P
A
T
V
H
G
A
L
L
-
S
G
L
R
E
A
G
R
I
----
A
D
Q
F
L
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
40.12
28%
-83
- C3 -
2IW5
3
KDM1A_HUMAN
A:
[480-533]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
V
Q
R
M
G
--
F
G
-------
N
-
L
N
K
V
V
L
C
F
D
R
V
-----
F
W
D
P
S
V
N
L
F
G
H
V
G
----
S
T
T
A
S
R
G
E
L
---------
F
----
L
F
W
N
L
Y
K
A
P
I
L
L
A
L
V
A
G
E
A
A
G
I
M
E
N
I
S
D
D
V
I
V
G
R
C
L
A
I
L
K
G
I
F
G
S
S
A
V
P
Q
P
K
E
T
V
V
S
R
W
R
----
A
D
P
W
A
R
G
S
Y
S
Y
V
A
A
G
S
S
G
N
D
---
Y
--
D
L
M
A
Q
P
I
T
P
G
P
S
I
P
G
A
P
Q
P
I
P
R
L
F
F
A
G
E
H
T
I
R
N
Y
-
P
A
T
V
H
G
A
L
L
----
S
G
L
R
E
A
G
R
I
A
D
Q
F
L
--
G
A
M
Y
T
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
40.10
19%
-90
- C1 -
1X1I
-
XANLY_BACGL
A:
[68-109]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
N
A
V
Y
E
R
L
----
R
T
M
A
L
--
A
A
T
T
V
------------
G
S
S
L
Y
G
N
A
-
D
L
K
E
D
I
L
----
D
A
L
D
W
L
Y
V
N
S
Y
N
S
T
R
S
R
----------
S
A
Y
N
--
W
W
H
W
Q
L
G
I
P
M
S
L
N
D
I
A
V
L
L
Y
D
--
D
I
-------
S
-
A
A
R
M
A
T
Y
M
D
T
I
-----
D
Y
F
T
P
S
I
G
L
T
G
A
A
----
R
A
W
Q
A
I
V
V
G
V
--
R
-
A
V
I
V
K
----
D
A
V
K
L
A
A
A
R
N
G
L
S
G
T
G
I
F
P
Y
A
T
G
G
D
G
F
Y
A
D
G
S
F
V
Q
H
T
T
F
A
Y
T
G
G
Y
G
S
S
V
L
E
T
T
A
N
L
M
Y
L
L
----
S
G
S
T
W
S
V
S
D
P
N
Q
S
N
V
W
Q
W
I
Y
---
E
--
A
Y
R
P
L
L
Y
K
G
A
M
M
D
M
V
R
G
R
E
I
S
R
S
Y
A
Q
D
H
A
V
G
H
G
I
-
V
A
S
I
V
R
L
A
Q
----
F
A
P
A
P
H
A
A
A
F
K
Q
I
A
--
K
R
V
I
Q
E
-
D
T
F
S
S
F
Y
G
D
V
S
T
D
T
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
40.04
16%
-51
- C1 -
2WCO
-
?
A:
[86-129]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
T
F
A
Y
G
R
L
----
W
T
M
T
E
--
A
Y
V
Q
E
------------
G
T
G
A
T
G
D
P
-
A
L
L
A
D
I
L
----
R
G
L
D
H
L
S
A
T
V
Y
H
P
A
T
T
R
----------
Y
G
N
W
--
W
E
W
Q
I
G
S
P
R
L
L
M
D
I
T
A
A
L
Y
D
H
--
L
G
-------
A
-
D
R
V
A
A
A
C
A
A
V
D
-----
H
F
V
P
D
A
M
L
G
A
Y
T
G
----
T
S
T
G
A
N
R
V
D
L
--
C
-
R
S
V
A
L
----
R
G
V
L
G
R
A
P
A
K
I
A
L
A
R
D
A
L
S
P
V
F
P
Y
V
T
K
G
D
G
L
Y
A
D
G
S
F
V
Q
H
T
W
V
A
Y
S
G
T
Y
G
Q
V
M
L
D
G
L
G
R
L
----
F
T
L
L
A
G
S
E
W
E
V
T
D
P
G
R
Q
L
V
L
---
D
--
S
V
E
H
A
Y
A
P
L
I
H
D
G
L
V
M
D
T
V
N
G
R
A
I
S
R
G
Y
L
K
S
D
D
L
-
H
V
M
R
S
D
H
F
H
----
G
Q
Q
L
I
A
A
M
A
V
L
A
G
G
--
A
S
N
A
E
R
-
E
R
W
H
A
R
I
K
G
W
I
E
R
D
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
39.99
28%
-73
- C3 -
2HKO
1
KDM1A_HUMAN
A:
[479-532]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
V
Q
R
M
G
--
F
G
-------
N
-
L
N
K
V
V
L
C
F
D
R
V
-----
F
W
D
P
S
V
N
L
F
G
H
V
G
----
S
T
T
A
S
R
G
E
L
---------
F
----
L
F
W
N
L
Y
K
A
P
I
L
L
A
L
V
A
G
E
A
A
G
I
M
E
N
I
S
D
D
V
I
V
G
R
C
L
A
I
L
K
G
I
F
G
S
S
A
V
P
Q
P
K
E
T
V
V
S
R
W
R
----
A
D
P
W
A
R
G
S
Y
S
Y
V
A
A
G
S
S
G
N
D
---
Y
--
D
L
M
A
Q
P
I
T
P
G
P
S
Q
P
I
P
R
L
F
F
A
G
E
H
T
I
R
N
Y
P
A
T
V
H
-
G
A
L
L
S
G
L
R
E
----
A
G
R
I
A
D
Q
F
L
G
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
39.75
28%
-82
- C3 -
2H94
1
KDM1A_HUMAN
A:
[479-532]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
V
Q
R
M
G
--
F
G
-------
N
-
L
N
K
V
V
L
C
F
D
R
V
-----
F
W
D
P
S
V
N
L
F
G
H
V
G
----
S
T
T
A
S
R
G
E
L
---------
F
----
L
F
W
N
L
Y
K
A
P
I
L
L
A
L
V
A
G
E
A
A
G
I
M
E
N
I
S
D
D
V
I
V
G
R
C
L
A
I
L
K
G
I
F
G
S
S
A
V
P
Q
P
K
E
T
V
V
S
R
W
R
----
A
D
P
W
A
R
G
S
Y
S
Y
V
A
A
G
S
S
G
N
D
---
Y
--
D
L
M
A
Q
P
I
T
P
G
I
P
R
L
F
F
A
G
E
H
T
I
R
N
Y
P
A
T
V
H
G
A
L
L
-
S
G
L
R
E
A
G
R
I
----
A
D
Q
F
L
G
A
M
Y
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
39.68
28%
-80
- C3 -
2UXN
2
KDM1A_HUMAN
A:
[480-533]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
V
Q
R
M
G
--
F
G
-------
N
-
L
N
K
V
V
L
C
F
D
R
V
-----
F
W
D
P
S
V
N
L
F
G
H
V
G
----
S
T
T
A
S
R
G
E
L
---------
F
----
L
F
W
N
L
Y
K
A
P
I
L
L
A
L
V
A
G
E
A
A
G
I
M
E
N
I
S
D
D
V
I
V
G
R
C
L
A
I
L
K
G
I
F
G
S
S
A
V
P
Q
P
K
E
T
V
V
S
R
W
R
----
A
D
P
W
A
R
G
S
Y
S
Y
V
A
A
G
S
S
G
N
D
---
Y
--
D
L
M
A
Q
P
I
T
P
G
P
S
I
P
G
A
P
Q
P
I
P
R
L
F
F
A
G
E
H
T
I
R
N
Y
-
P
A
T
V
H
G
A
L
L
----
S
G
L
R
E
A
G
R
I
A
D
Q
F
L
--
G
A
M
Y
T
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
Fugue
39.61
22%
22
- C2 -
1XEQ
12
NS1_INBLE
A:
[15-103]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
A
T
N
A
T
I
N
----
F
E
A
G
I
L
E
C
Y
E
R
F
----------
S
W
Q
R
A
L
D
Y
P
G
Q
D
R
L
H
R
L
K
----
R
K
L
E
S
R
I
K
T
H
N
K
S
E
P
--------------------
E
N
K
R
M
S
L
E
E
R
K
A
I
G
V
K
M
M
K
--
V
L
-------
L
F
M
D
P
S
A
G
I
E
G
F
E
-----
P
Y
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
39.31
28%
-80
- C3 -
4BAY
1
KDM1A_HUMAN
A:
[484-537]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
V
Q
R
M
G
--
F
G
-------
N
-
L
N
K
V
V
L
C
F
D
R
V
-----
F
W
D
P
S
V
N
L
F
G
H
V
G
----
S
T
T
A
S
R
G
E
L
---------
F
----
L
F
W
N
L
Y
K
A
P
I
L
L
A
L
V
A
G
E
A
A
G
I
M
E
N
I
S
D
D
V
I
V
G
R
C
L
A
I
L
K
G
I
F
G
S
S
A
V
P
Q
P
K
E
T
V
V
S
R
W
R
----
A
D
P
W
A
R
G
S
Y
S
Y
V
A
A
G
S
S
G
N
D
---
Y
--
D
L
M
A
Q
P
I
T
P
G
P
S
I
P
G
A
P
Q
P
I
P
R
L
F
F
A
G
E
H
T
I
R
N
Y
-
P
A
T
V
H
G
A
L
L
----
S
G
L
R
E
A
G
R
I
A
D
Q
F
L
--
G
A
M
Y
T
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------