@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs0358: (2015-11-30 )
MKLNKIILSTAALTALFLGYNSVTADTYNNYQPHRSNNMDLTEEYNYNNQIELQERIKKLNIPFKEKLALLRKVKSRQDSYVLDTLRKEVENKNSEYSELEQEYQRISALIDAKFPQGKSSLAEKLHKELIWDLDGVKYDEGISKRTALKKLEGKINEYTKKYSYLF
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------.......--------------------..10........20........30........40........50.-.......-60.----.....-----..70..--......80---......-.---..90........100..-.-....------110---..-------------------.....--.120.......130-..-....---..140-----.......150.......160.....-------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------MKL
N
K
I
I
--------------------
L
S
T
A
A
L
T
A
L
F
LGYNSVTADTYNNYQPHRSNNMDL
T
E
EYNYN
N
Q
I
E
-
L
Q
E
R
I
K
K-LNI----
P
F
K
E
K
-----
L
A
L
L
R
K
--
V
K
SRQD
S
----
Y
V
L
D
T
L
-
R
---
K
E
V
ENKN
S
E
Y
S
E
L
E
Q
E
Y
-
Q
-
R
I
S
A
------
L
I
----DA-------------------KFPQ
G
--
K
S
S
L
A
E
K
L
H
K
E
L
I
--
W
D-LDGV---KYDEG-----I
S
K
R
T
A
L
K
K
L
E
G
K
I
N
E
Y
T
K
K
YSYLF-------------------------------------------------------------------------------------------------
27
Fugue
81.43
21%
-6
- C1 -
2CVH
-
RADB_THEKO
A:
[1-220]
-------------------------------------------------------------------------------------------------------------------------------------------------------MLSTGT
K
S
L
D
S
L
L
G
GGFAPG
V
L
T
Q
V
Y
G
P
Y
ASG
K
T
T
L
A
L
Q
T
G
L
L
S
G
K
K
V
A
Y
V
D
T
E
G
G
F
S
P
E
R
L
V
Q
M
A
E
T
R
G
L
N
---
P
E
E
-
A
L
S
R
F
I
L
-
F
T
P
S---
D
F
K
E
Q
-----
R
R
V
I
G
S
--
L
K
K
T
V
D
S
NFA
L
V
V
V
D
S
I
-
T
AHY
R
A
E
E
N
R
S
G
L
I
A
E
L
S
R
Q
L
-
Q
-
V
L
L
W
------
I
A
----
R
K
H
N
I
P
V
I
V
I
N
Q
V
H
FDSRTEM
T
K
P
V
A
--
E
Q
T
L
G
Y
R
C
K
D
I
L
R
--
L
D
K
L
P
K
P
---
G
L
R
V
A
-----
V
L
E
R
H
R
F
R
P
-
E
G
L
M
A
Y
F
R
I
T
E
R
G
I
E
DVE----------------------------------------------------------------------------------------------
25
Fugue
76.41
17%
-11
- C7 -
1FLC
2
?
B:
[4-165]
---------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
D
L
I
--------------------
I
G
V
-----
L
F
V
A
I
V
E
T
G
I
G
G
Y
L
L
G
S
R
K
E
S
G
G
-
G
V
T
K
E
S
A
E
K
G
F
E
K
-
I
G
N
D
I
Q
I
-
L
K
S
----
S
I
N
I
A
-----
I
E
K
L
N
D
--
R
I
S
H
D
E
Q
----
A
I
R
D
-
L
-
T
---
L
E
I
E
N
A
R
S
E
--
A
L
L
G
E
L
-
G
-
I
I
R
A
------
L
L
----
V
G
-------------------
N
I
S
I
G
--
L
Q
E
S
L
W
E
L
A
S
E
I
T
--
N
R
-
A
G
D
L
---
A
V
E
V
S
PG
C
W
I
I
D
N
N
I
C
D
Q
S
C
Q
N
F
I
F
K
F
N
E
T
A
P
V
P
T
I------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
68.49
25%
6
- C7 -
2OLU
-
?
A:
[224-310]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
R
T
P
E
E
R
Q
N
I
D
T
N
Q
D
S
E
Y
N
S
Y
V
N
-
F
V
K
S
E
L
M
-
N
N
K
----
A
F
K
D
E
N
L
G
N
V
L
Q
S
G
I
K
--
I
Y
T
N
M
D
K
----
D
V
Q
K
T
L
-
Q
---
N
D
V
D
N
-
G
S
F
Y
K
N
K
D
Q
---
Q
-
V
G
A
T
------
I
L
----
D
S
-------------------
K
T
G
G
L
--
V
A
I
S
G
G
R
D
F
K
D
V
V
--
N
R
-
N
Q
A
T
---
D
P
H
P
T
-----
G
S
S
L
K
P
F
L
A
Y
G
P
A
I
E
N
M
K
W
A
T
N
H
A
I
-------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
66.93
25%
10
- C7 -
2OLV
-
?
A:
[224-310]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
R
T
P
E
E
R
Q
N
I
D
T
N
Q
D
S
E
Y
N
S
Y
V
N
-
F
V
K
S
E
L
M
-
N
N
K
----
A
F
K
D
E
N
L
G
N
V
L
Q
S
G
I
K
--
I
Y
T
N
M
D
K
----
D
V
Q
K
T
L
-
Q
---
N
D
V
D
N
-
G
S
F
Y
K
N
K
D
Q
---
Q
-
V
G
A
T
------
I
L
----
D
S
-------------------
K
T
G
G
L
--
V
A
I
S
G
G
R
D
F
K
D
V
V
--
N
R
-
N
Q
A
T
---
D
P
H
P
T
-----
G
S
S
L
K
P
F
L
A
Y
G
P
A
I
E
N
M
K
W
A
T
N
H
A
I
-------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
66.48
26%
-1
- C7 -
4D2U
-
CLPB_ECOLI
A:
[406-488]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
S
K
P
E
-
E
L
D
R
L
D
R
-
R
I
I
----
Q
L
K
L
E
-----
Q
Q
A
L
M
K
--------------
R
L
D
M
L
-
N
---
E
E
L
S
D
K
E
R
Q
Y
S
E
L
E
E
E
W
-
K
-
A
E
K
A
S
L
S
G
T
Q
T
I
----
K
A
-------------------
E
L
E
Q
A
--
K
I
A
I
E
Q
A
R
R
M
S
E
L
--
Q
Y
-
G
K
I
P
---
E
L
E
K
Q
-----
L
E
A
A
T
Q
L
E
G
K
T
M
R
L
L
R
N
K
V
T
D
A
E
I
A
-------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
65.09
26%
5
- C7 -
4D2Q
-
CLPB_ECOLI
A:
[406-488]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
S
K
P
E
-
E
L
D
R
L
D
R
-
R
I
I
----
Q
L
K
L
E
-----
Q
Q
A
L
M
K
--------------
R
L
D
M
L
-
N
---
E
E
L
S
D
K
E
R
Q
Y
S
E
L
E
E
E
W
-
K
-
A
E
K
A
S
L
S
G
T
Q
T
I
----
K
A
-------------------
E
L
E
Q
A
--
K
I
A
I
E
Q
A
R
R
M
S
E
L
--
Q
Y
-
G
K
I
P
---
E
L
E
K
Q
-----
L
E
A
A
T
Q
L
E
G
K
T
M
R
L
L
R
N
K
V
T
D
A
E
I
A
-------------------------------------------------------------------------------------------------
33
Fugue
64.39
8%
-20
- C2 -
1K3K
-
?
A:
[1-146]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
E
D
V
L
P
--------------------
G
E
V
L
A
I
E
G
I
F
M
--
A
C
G
L
N
E
P
E
Y
L
Y
H
P
L
L
S
P
I
K
L
Y
I
T
G
L
M
R
D
K
E
S
L
-
F
E
A
M
L
A
N
-
V
R
F
----
H
S
T
T
G
-----
I
D
Q
L
G
L
-----------------
S
M
-
L
---
Q
V
S
G
D
G
N
M
N
W
G
R
A
L
A
I
L
-
T
-
F
G
S
F
------
V
A
----
Q
K
---------------------
L
S
N
--
E
P
H
L
R
D
F
A
L
A
V
L
P
--
A
Y
-
A
Y
E
A
---
I
G
P
Q
W
-----
F
R
A
R
G
G
W
R
G
L
K
A
Y
C
T
Q
V
L
T
-------------------------------------------------------------------------------------------------------
28
Fugue
61.15
16%
4
- C6 -
4C0H
-
CLP1_YEAST
A:
[19-445]
GDN
E
W
H
K
L
V
I
P
KGSDW
Q
I
D
L
K
A
E
G
K
L
I
V
K
V
N
S
G
I
V
E
IFG
T
E
L
A
V
D
D
E
Y
T
F
Q
N
W
K
F
P
I
Y
A
VEE
T
E
L
L
W
K
C
PDLTTNT
I
T
V
K
P
N
HT
M
K
Y
I
Y
N
L
H
F
M
L
E
K
I
R
M
S
NFEGPR
V
V
I
V
G
G
S
QTRKTSL
S
R
T
L
C
S
Y
A
L
K
F
N
A
Y
Q
P
L
Y
I
N
LDPQQPIFTVPG
C
I
S
A
T
P
I
S
D
I
L
--------------------
D
A
Q
L
P
----
T
W
G
Q
S
L
T
S
G
A
T
L
L
H
N
K
Q
P
M
V
K
N
F
G
L
-
E
R
I
N
E
N
K
D
L
--
Y
L
E
C
I
S
Q
-
L
G
Q
----
V
V
G
Q
R
-----
L
H
L
D
P
Q
--
V
--
R
R
S
G
----
C
I
V
D
T
P
S
I
---
S
Q
L
D
E
N
L
A
E
L
H
H
I
I
E
K
L
-
N
V
N
I
M
L
------
V
L
C
S
ET
D
P
-------------------
L
W
E
K
V
--
K
K
T
F
G
P
E
L
G
N
N
N
I
--
F
F
-
I
P
K
L
VD
D
V
Y
K
R
S
-----
L
Q
R
T
S
I
R
E
Y
F
Y
G
S
L
D
T
A
L
S
P
Y
A
I
G
V
D
YED
L
T
I
W
K
P
S
N
VFDNEVGRV
E
L
F
P
V
T
ITPSNLQH
A
I
I
A
I
T
FAERRAD
Q
A
T
V
I
K
SPIL
G
F
A
L
ITEVNEKRR
K
L
R
V
L
L
PVPGRLPS
K
A
M
I
L
T
S
Y
R
Y
L
E
29
Fugue
60.28
10%
14
* C7 *
3H6P
1
?
A:
[31-90]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
F
A
A
K
-----
A
G
L
M
R
H
--
T
I
G
Q
A
E
Q
----
Q
A
M
S
A
Q
-
A
---
F
H
Q
G
E
S
A
A
A
F
Q
G
A
H
A
R
F
-
V
-
A
A
A
A
------
K
V
----
N
T
-------------------
L
L
D
I
A
--
Q
A
N
L
---------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
58.96
23%
68
- C7 -
3J6D
-
PRGH_SALTY
A:
[179-242]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
E
K
E
R
F
-
Q
V
L
----
P
G
R
D
K
-----
M
L
Y
V
A
A
--
Q
N
E
R
D
T
L
----
W
A
R
Q
V
L
-
A
---
R
G
D
Y
D
K
N
A
R
V
I
N
E
N
E
E
N
-
K
-
R
I
S
I
------
W
L
----
D
T
-------------------
Y
Y
P
Q
L
--
A
Y
Y
R
I
H
F
D
E
P
R
K
P
--
V
F
-
W
L
S
R
---
Q
R
N
T
M
-----
S
K
K
E
L
E
V
L
S
Q
K
L
R
A
L
M
P
Y
A
D
S
V
N
I
T
-------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
57.41
30%
7
- C7 -
2DC4
2
?
A:
[28-107]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
E
-
E
Q
E
D
V
Y
--
F
E
L
----
P
-
S
P
K
-----
L
L
R
V
R
K
--
I
N
N
T
G
K
S
----
Y
I
--
T
Y
-
K
---
E
I
L
D
K
R
N
E
E
F
Y
E
L
E
F
E
V
-
Q
-
D
--------------------------------------
P
E
G
------
A
I
E
L
F
K
R
L
G
--
F
K
-
V
Q
G
V
-------------
V
K
K
R
R
W
I
Y
K
L
N
N
V
T
F
E
L
N
R
V
E
K
A
G
D
-------------------------------------------------------------------------------------------------
26
Fugue
55.95
19%
43
- C7 -
1KIL
-
CPLX1_RAT
E:
[9-49]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
E
E
----
E
R
Q
E
A
L
-
R
---
Q
A
E
E
E
R
K
A
K
Y
A
K
M
E
A
E
R
-
E
-
V
M
R
Q
------
G
I
----
R
D
-------------------
K
Y
G
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
55.47
35%
63
- C7 -
1GO4
-
MD1L1_HUMAN
E:
[494-547]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
R
E
E
A
-------
D
T
L
-
R
---
L
K
V
E
E
L
E
G
E
R
S
R
L
E
E
E
K
-
R
-
M
L
E
A
------
Q
L
----
E
R
-------------------
R
A
L
Q
G
DY
D
Q
S
R
T
K
V
L
H
M
S
L
-------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
55.00
36%
-23
- C7 -
1ZFJ
-
IMDH_STRPY
A:
[76-124]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
M
----
S
I
T
E
Q
-----
A
E
E
V
R
K
--
V
K
R
S
E
N
G
----
V
I
I
D
P
F
-
F
---
L
T
P
E
H
K
V
S
E
A
E
E
L
M
Q
R
Y
---
R
I
S
G
------
V
P
----
I
V
-------------------
E
T
L
A
N
--
R
K
L
V
G
I
I
T
N
R
D
M
R
--
F
I
-
S
D
Y
N
---
A
P
I
S
E
-----
H
M
T
S
E
H
L
V
T
A
A
V
G
T
D
L
E
T
A
E
R
I
L
H
E
-------------------------------------------------------------------------------------------------
20
HHSearch
54.29
22%
8
- C7 -
2HFI
-
YPPE_BACSU
A:
[69-123]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
V
H
K
E
Q
I
E
A
V
K
D
N
F
L
E
-
L
V
L
Q
S
Y
V
H
H
I
H
K
-----
K
R
F
K
D
I
--
T
E
S
V
L
------
Y
T
L
H
A
V
-
K
---
D
E
I
A
R
E
D
S
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
54.11
16%
-14
- C7 -
2DGJ
-
EBHA_STAAM
A:
[201-251]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
N
L
R
N
A
K
T
S
-
A
T
N
T
I
N
G
L
P
N
L
----
T
Q
L
Q
K
-----
D
N
L
K
H
Q
--
V
E
Q
A
Q
N
V
----
V
G
V
N
G
V
-
K
---
D
K
G
N
L
E
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
53.68
24%
3
- C7 -
2ETS
4
?
A:
[73-122]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
M
N
S
R
K
F
E
L
L
I
A
N
I
E
Q
-
L
S
V
E
C
H
F
K
R
T
S
R
-----
K
L
F
I
E
K
--
L
K
S
V
Q
------
Y
D
L
Q
N
I
-
L
---
D
G
V
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
52.51
23%
45
- C7 -
3GR1
-
PRGH_SALTY
A:
[179-242]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
E
K
E
R
F
-
Q
V
L
----
P
G
R
D
K
-----
M
L
Y
V
A
A
--
Q
N
E
R
D
T
L
----
W
A
R
Q
V
L
-
A
---
R
G
D
Y
D
K
N
A
R
V
I
N
E
N
E
E
N
-
K
-
R
I
S
I
------
W
L
----
D
T
-------------------
Y
Y
P
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
51.98
23%
52
- C7 -
2Y9J
-
PRGH_SALTY
A:
[179-242]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
E
K
E
R
F
-
Q
V
L
----
P
G
R
D
K
-----
M
L
Y
V
A
A
--
Q
N
E
R
D
T
L
----
W
A
R
Q
V
L
-
A
---
R
G
D
Y
D
K
N
A
R
V
I
N
E
N
E
E
N
-
K
-
R
I
S
I
------
W
L
----
D
T
-------------------
Y
Y
P
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
51.38
8%
-18
- C5 -
1FIO
2
SSO1_YEAST
A:
[1-196]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
M
H
D
F
V
G
F
--------------------
M
N
K
I
S
Q
I
N
R
D
L
D
K
Y
D
H
T
I
N
Q
V
D
S
L
H
K
R
L
L
T
E
V
N
E
E
Q
A
S
H
L
R
H
S
L
D
N
F
V
A
Q
A
T
D
-
L
Q
F
----
K
L
K
N
E
-----
I
K
S
A
Q
R
D
G
I
H
D
T
N
K
Q
----
A
Q
A
E
N
S
-
R
---
Q
R
F
L
K
L
I
Q
D
Y
R
I
V
D
S
N
Y
K
E
-
E
N
K
E
------
Q
A
----
K
R
-------------------
Q
Y
M
I
I
--
Q
P
E
A
T
E
D
E
V
E
A
A
I
S
D
V
G
-
G
Q
Q
I
---
F
S
Q
A
L
-----
L
E
A
K
T
A
L
A
E
V
Q
A
R
H
Q
E
L
L
K
L
E
K
S
M
A
E
L
T
Q
L
F
N
D
M
E
ELVIEQQ--------------------------------------------------------------------------------