@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs0360: (2015-11-30 )
MKKLFNKRRSLFLTQNSKYLRYVFNDHFVLVLMFLSGFLLYQYSQLLKDFPKTHWPIIVIVSIIILMLLAMGGIASYLEPADKQFLLIKEEAIKEIINSAKKRTYIFWLVIQTLFLVLISPILIKLGLSVFMITLLIFGLGIIKWLVITYKVKVFYNNQNLNWDAAINHEQERKQSILKFFSLFTNVKGISTSVKRRSFLDGILKLISKTPSRLWTNLFVRAFLRSSDYLGLTIRLVTLNILSVIFVNETYLALALAFVFNYLLLFQLLALGHHFDYQYMNQLYPVRLNAKASQLKGFLRVLSYAVTVIDSILIRELKPVILLIVLMLIVTEYYIPYKIKVSGKSF
Atome Classification :
(18 SA)
------------------------------------------.........10........20..-.---.....30....-..-----..40....--....50.....----...60.-------....-...70........80.-----------..---.-....90.----------------.......100--...-....110..----.....120...--..-.---.130..------------------.....------140-------.......150....-...160...------------------....170.......180........190..----------......200.-......210.......220-........230...-----------------....240.......250.......260.......--270.......280.......290...----....300..--.....310----.---------......320--..-----.......330.--------......340.....----------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------
M
K
K
L
F
N
K
R
R
S
L
F
LTQNS
K
Y
L
R
Y
V-F---ND
H
F
V
L
V
L
M
F
L
-
S
G
-----
F
L
L
Y
Q
Y
S
Q
--
L
L
K
DFPKTHW
P
----
I
I
V
I
V
S
-------
I
I
I
L
-
M
L
L
A
M
G
G
I
A
S
Y
LEPAD-----------K
Q
---
F
-
L
L
I
K
E
E
A
----------------
I
K
E
I
I
N
S
A
KK--
R
T
Y
-
I
F
W
L
V
I
Q
T
L
----
F
L
V
L
I
S
P
I
L
I
K
--
L
G
-
L
---
S
V
F
M
I
T
------------------
L
L
I
F
G
------
L
G
I
-------
I
K
W
L
V
I
T
Y
K
V
K
V
F
Y
-NNQNLNWDA------------------AI
N
H
E
Q
E
R
K
Q
S
I
L
K
F
-
F
S
L
F
TNVKG
I
S
-
T
S
----------
V
K
R
R
S
F
L
D
G
I
-
L
K
L
I
SK
T
P
S
R
L
W
T
N
L
F
V
R
--
A
F
L
RSSDY
L
G
L
T
I
R
-----------------
L
V
T
L
N
I
L
S
V
I
F
VN
E
T
Y
L
A
L
A
L
A
F
V
F
N
Y
L
L
L
F
Q
L
L
--
A
LGHHF
D
Y
Q
Y
M
N
QLY
P
V
R
LNA
K
A
S
Q
L
----
K
G
F
L
R
V
L
S
Y
--
A
V
T
V
I
D
S
I
----
L
---------
I
R
E
L
K
P
V
----
I
L
-----
L
I
V
L
M
L
I
V
T
EY--------YI
P
Y
K
I
K
V-SGKSF----------------------------
1
PsiBlast_PDB
87.44
50%
-188
- C- -
3J8E
-
RYR1_RABIT
G:
[4548-4579]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
-----------------
V
K
F
L
N
Y
L
S
R
N
F
Y
T
L
R
F
L
A
L
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A
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A
I
N
F
I
L
L
F
Y
K
V
--
S
D
S
P
F
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C
I
I
G
Y
N
C
L
K
V
P
L
V
I
F
K
R
E
K
E
----
L
A
R
K
L
E
F
D
G
--
L
Y
I
T
E
Q
P
G
----
D
---------
D
D
V
K
G
Q
W
----
D
R
-----
L
V
L
N
T
P
S
F
P
S
N
--------
Y
W
D
K
F
V
K
R
-
K
V
L
D
K
----------------------------
19
Fugue
68.73
17%
-134
- C6 -
3THI
1
THI1_PANTH
A:
[1-362]
-----------------------------------------I
T
L
K
V
A
I
Y
P
Y
V
P
D
P
A
R
F
Q
A
A
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Q
-
W
---
Q
R
Q
E
P
G
V
K
L
E
F
-
T
D
-----
W
D
S
Y
S
A
D
--------
P
P
D
D
L
D
----
V
F
V
L
D
S
-------
I
F
L
S
-
H
F
V
D
A
G
----
Y
L
L
P
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G
-----------
S
Q
---
D
-
I
D
Q
A
E
D
V
----------------
L
P
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A
L
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A
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NG
E
V
Y
G
L
P
Q
I
L
C
T
N
L
----
L
F
Y
R
K
G
D
L
K
I
G
--
Q
V
-
D
---
N
I
Y
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L
Y
K
K
IGTSHSEQIPPPQN
K
G
L
L
I
N
M
------
A
G
G
-------
T
T
K
A
S
M
Y
L
E
A
L
I
D
V
-
T
G
Q
Y
T
E
Y
D
L
-------------------
L
P
P
L
D
P
L
N
D
K
V
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-
L
R
L
L
I
N
M
A
G
E
K
-
P
S
Q
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V
R
A
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W
F
A
Q
G
S
G
R
A
F
I
G
Y
S
E
S
M
M
R
M
G
D
Y
A
E
Q
V
R
F
K
P
I
S
S
S
A
G
Q
D
I
P
-----------------
L
F
Y
S
D
V
V
S
V
N
--
S
K
T
A
H
P
E
L
A
K
K
L
A
N
V
M
A
S
A
D
T
V
E
Q
A
L
R
P
Q
A
D
G
Q
Y
P
Q
Y
L
L
P
A
R
H
Q
V
Y
E
A
L
M
----
Q
D
Y
P
I
Y
S
E
L
--
A
Q
I
V
---------------------
N
K
P
S
----
N
R
-----
V
F
R
L
G
P
E
V
R
T
W
--------
L
K
D
A
K
Q
V
L
-
P
E
A
L
G
----------------------------
14
Fugue
64.97
16%
-147
* C7 *
4TXD
1
?
A:
[21-369]
--------------------------------------KRD
V
L
A
E
L
G
L
G
D
L
R
P
Y
L
R
S
I
G
D
K
D
R
I
F
-
P
---
K
A
H
R
I
E
V
V
F
L
V
-
R
A
A
N
Y
--
L
L
L
R
T
E
G
A
--
G
T
I
N
M
T
T
L
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Y
S
G
G
A
M
E
V
P
V
I
Q
-------
P
Q
K
L
-
M
A
V
T
R
R
Q
M
L
Q
L
L
R
E
Y
R
-----------
D
S
---
L
D
E
V
S
K
R
W
L
----------------
V
Q
E
V
I
G
K
A
K
D
------
L
G
F
K
K
V
S
E
E
----
W
N
C
T
I
Q
--------
G
-
M
---
D
G
F
C
P
H
------------------
C
T
I
F
G
------
A
A
L
T
EQHNEK
F
G
G
L
S
I
G
I
K
T
R
V
R
F
-
D
P
A
F
A
T
-
Q
R
------------------
R
I
T
P
E
T
H
N
K
V
T
E
-
G
H
-
L
S
M
T
G
Q
A
L
F
S
E
-
V
H
----------
V
E
P
G
T
V
F
I
G
R
-
A
E
L
V
D
L
T
E
P
E
L
V
A
T
L
Y
S
L
--
A
T
L
R
E
L
G
G
R
S
G
I
Y
G
-----------------
T
V
R
V
E
I
L
G
V
K
A
G
K
-----------
Y
A
S
T
T
A
Y
D
L
A
--
A
E
N
A
G
K
G
Y
E
E
V
K
K
N
L
K
E
R
L
E
K
L
---------
G
F
T
P
V
--
D
--
N
S
K
L
L
A
A
V
----
D
---------
H
K
D
P
N
G
L
----
F
K
D
----
L
W
R
S
S
I
D
F
A
E
K
--------
M
V
K
W
V
E
E
L
-
K
G
G
G
-----------------------------
13
Fugue
60.33
15%
-116
* C6 *
4XFK
4
?
A:
[9-399]
---------------------------A
E
P
L
K
I
A
L
V
E
TLSGP
Q
A
S
T
G
L
L
Y
R
A
A
V
L
Y
Q
L
G
K
I
N
E
A
G
G
F
---
N
G
E
K
I
Q
I
L
E
Y
D
-
N
Q
-----
G
G
P
V
G
A
A
D
--
R
V
K
A
A
I
A
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G
A
Q
----
I
I
V
Q
G
S
-------
S
S
A
V
-
A
G
Q
I
T
E
D
V
R
K
Y
N
L
R
N
K
-----------
G
K
E
V
L
Y
-
L
N
L
G
A
E
A
----------------
L
E
L
T
G
S
K
C
H
F
--
Y
H
F
-
R
F
S
P
N
A
A
I
R
----
F
K
T
V
A
Q
G
M
K
D
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GI
L
G
-
E
---
R
A
Y
S
I
N
------------------
Q
N
--------------------
Y
S
W
G
V
D
V
E
N
T
V
V
A
-
N
A
K
E
I
G
Y
E
V
------------------
V
D
K
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L
H
E
V
N
K
-
I
Q
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F
-
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A
K
I
Q
A
A
N
V
D
T
----------
V
F
T
G
N
W
S
N
D
L
-
L
L
L
M
K
A
A
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A
G
L
K
A
K
F
A
T
--
S
F
L
D
Q
P
G
N
I
G
N
A
G
A
-----------------
I
A
E
G
H
I
V
S
T
P
F
N
P
E
A
N
G
E
A
S
M
A
F
A
E
D
Y
K
K
V
T
-------
G
H
Y
P
S
Y
V
E
P
A
A
V
F
G
L
Q
L
F
G
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A
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K
N
VKPG
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K
I
N
T
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I
--
A
L
A
I
E
N
A
S
----
V
---------
K
T
P
M
G
D
Y
----
S
M
R
SDDH
Q
A
K
F
P
M
V
V
Q
E
V
--------
S
K
K
A
R
I
K
A
-
D
G
T
E
Y
G
F
L
P
F
K
TFTGDESIDPVQES
C
S
M
K
R
PG-
17
Fugue
57.41
11%
-174
- C6 -
1DDZ
2
?
A:
[9-489]
VMS
D
L
E
K
K
F
I
E
L
E
A
K
L
V
A
Q
PAGQAMPGKSN
I
F
A
N
N
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A
W
R
Q
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L
K
Q
D
P
E
F
F
N
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PAGE
V
F
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A
N
--
Q
C
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H
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----
V
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Q
Y
A
V
QYLKVK
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G
H
Y
G
C
G
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A
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A
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D
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L
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---
V
-
R
R
M
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A
K
Y
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C
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E
--
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L
T
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Q
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G
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V
Y
G
------
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G
D
-------
G
K
L
R
D
L
G
V
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V
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S
D
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D
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SDSGALKAGNPNAPLVQV
T
K
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T
A
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V
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E
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A
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E
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DSRVP
A
N
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I
I
NLPAGE
V
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Q
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I
H
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M
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R
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--
V
C
G
H
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----
A
C
G
G
C
A
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A
L
G
D
S
R
L
G
L
I
----
D
N
W
L
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--
V
R
R
H
N
Q
A
E
----
L
S
R
I
TD
P
K
D
S
L
N
R
L
I
E
I
----
N
V
-----
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Q
M
H
N
V
C
A
T
S
--------
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V
Q
D
A
W
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--
A
G
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E
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V
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Y
G
VGDG
K
L
R
D
MGVVAKANDDIG
18
Fugue
52.77
14%
-149
- C4 -
4I6M
6
ARP9_YEAST
B:
[3-439]
---------------------------------------------
P
F
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NQDAFEAELS
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Y
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M
I
---
S
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Q
N
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------------------
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TH
H
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--
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L
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L
D
N
----------------
I
D
D
I
N
K
A
K
A
V
W
E
N
-
I
I
I
V
G
G
T
T
S
I
S
G
F
K
E
A
L
L
G
Q
--
L
L
K
D
H
L
I
I
E
P
-----
E
E
E
K
S
K
R
E
E
E
A
----
K
S
F
V
P
T
I
E
Y
VQ
C
P
T
V
I
K
L
A
KYPD
Y
---------
F
P
E
W
K
K
S
GYSE
I
I
-----
F
L
G
A
Q
I
V
S
K
Q
I
F
T
H
PKDTF
Y
I
T
R
E
K
Y
N
M
K
G
P
A
A
LWDVQF----------------------
9
HHSearch
38.96
8%
171
- C7 -
2KE4
-
A:
[349-384]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
Q
L
E
E
R
S
R
------------------
E
L
Q
K
E
V
D
Q
R
E
A
L
K
K
M
-
K
D
V
Y
E
K
T
P
Q
M
G
-
D
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
37.35
19%
265
- C7 -
3NKZ
1
FLIT_YERE8
A:
[27-52]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
T
E
G
N
W
D
A
------------------
L
V
D
L
E
M
T
Y
L
K
A
V
E
S
T
-
A
N
I
T
I
S
S
C
S
S
L
-
M
L
----------
Q
D
L
L
R
E
K
L
R
A
-
I
L
D
N
E
I
E
I
K
R
L
L
Q
L
R
L
D
R
--
L
S
D
L
V
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
36.26
38%
565
- C7 -
2QFA
-
INCE_HUMAN
C:
[29-44]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
D
L
V
W
L
E
------------------
E
I
Q
E
E
A
E
R
M
F
T
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
36.21
26%
250
- C7 -
3A7M
-
FLIT_SALTY
A:
[24-50]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
Q
R
G
E
W
D
L
------------------
L
L
Q
Q
E
V
S
Y
L
Q
S
I
E
T
V
-
M
E
K
Q
T
P
P
G
I
T
R
-
S
I
----------
Q
D
M
V
A
G
Y
I
K
Q
-
T
L
D
N
E
Q
L
L
K
G
L
L
Q
Q
R
L
D
E
--
L
S
S
L
I
G
Q
S
T
R
Q
K
S
L
-----------------
N
N
A
Y
G
R
L
S
G
M
L
L
V
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
35.35
25%
392
- C7 -
2LQC
-
B:
[1-24]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-
T
G
A
A
L
S
W
Q
A
------------------
A
I
D
A
A
R
Q
A
K
L
M
G
S
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
33.30
21%
462
- C7 -
4JHJ
1
?
C:
[2-20]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
T
D
S
W
A
Q
------------------
A
V
D
E
Q
E
A
A
A
E
S
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
31.46
27%
765
- C1 -
1Q2F
-
?
A:
[18-28]
----------------------------------------------
W
K
M
R
R
N
Q
F
W
V
K
V
Q
R
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
30.47
31%
483
- C7 -
1ZRV
-
SPING_PSEUS
A:
[5-20]
------------------------------------------------------------------------------------------------------------------------------------------------
K
V
A
D
-----------
K
V
---
L
-
L
L
K
Q
L
R
I
----------------
M
R
L
L
T
R
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
19.24
27%
988
- C3 -
1WN8
-
A:
[5-15]
-----------------------------------------------------------------------------------------------------------------------------------------------
S
E
T
T
L
-----------
T
M
---
F
-
L
K
E
M
Q
L
K
----------------
G
L
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
17.72
42%
286
- C5 -
2LX0
-
?
A:
[10-29]
-----------------------------------------------------------------------
A
G
L
V
A
L
L
T
F
L
A
F
G
-----
F
W
L
F
K
Y
L
Q
--
K
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
15.45
33%
820
- C7 -
1WN4
-
A:
[10-21]
----------------------------------------------------------------------------------------------------------------------------------------------
L
L
E
E
A
L
-----------
V
A
---
F
-
A
K
K
G
N
L
G
----------------
G
L
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
1.43
33%
2302
- C2 -
2L2T
-
ERBB4_HUMAN
A:
[74-79]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
V
R
R
K
S
------------------------------------