@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs0361: (2015-11-30 )
MQGLEIVMDIDTLEIYEVIDHDQEMSSDVTEETADHISIQQVSQVTFYQMNLFDEMNLANTS
Atome Classification :
(19 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...----------.-.....10.....----------...20------........--.--30---------.........----40...--...-..50.-..-.....60..---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQG----------
L
-
E
I
V
M
DI
D
T
L
E
I
Y
----------
E
V
ID-------
H
D
Q
E
M
S
SD--
V
--
T
----------
E
E
T
A
D
H
I
S
I
----
Q
Q
V
S
Q
--
V
T
F
-
Y
Q
M
N
L
-FD-EMNLAN-TS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
67.49
19%
-13
- C5 -
2KON
-
?
A:
[1-82]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
N
V
A
H
Y
RG
Y
E
I
E
P
G
----------
H
-
Q
Y
R
D
D
I
R
K
Y
V
P
Y
----------
A
L
I
R
-------
K
V
G
V
P
D
R
T
--
P
--
I
P
T
T
Y
PEFYDL
E
A
D
A
E
R
V
S
I
----
A
C
A
K
I
--
I
I
D
-
S
H
L
D
R
-
H
D
-
Q
-
G
L
A
D
-
L
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
67.39
16%
-32
- C5 -
3NYE
2
DAUA_PSEAE
A:
[1-381]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H
H
H
H
H
H
P
I
E
A
D
Y
L
V
I
G
AG
I
A
G
----------
A
-
S
T
G
Y
W
L
S
A
H
G
R
V
----------
V
V
L
E
-------
R
E
A
Q
P
G
Y
H
--
S
--
T
----------
G
R
S
A
A
H
Y
T
V
AYGT
P
Q
V
R
A
--
L
T
A
-
A
S
R
A
F
-
F
D
-
N
P
P
A
G
F
-
C
E
HPLL
S
P
R
P
E
M
V
V
DFSDD
P
E
E
L
R
R
Q
Y
E
S
G
K
A
L
V
PQ
M
R
L
L
D
A
E
Q
A
C
S
I
V
PVLRRDKVF
G
A
T
Y
D
PT
G
A
D
I
D
T
D
A
L
H
Q
G
Y
L
R
G
I
R
R
N
Q
G
Q
V
L
C
NHEALEIRRVDG
A
W
E
V
R
C
DA
G
S
Y
R
A
AVLVNAAGAW
C
D
A
I
A
G
L
A
GVRPLG
L
Q
P
K
R
R
S
A
F
I
F
A
P
P
PGIDCHDWPMLVSLDES
F
Y
L
K
P
D
AG
M
L
L
G
S
PA
N
A
D
P
V
E
AHD
V
Q
P
E
Q
L
D
I
A
T
G
M
Y
L
I
E
E
A
T
TLTIRRPE
H
T
W
A
G
L
R
S
F
V
ADG
D
L
V
A
G
Y
AANAEGFFWVAAQGGYGIQT
S
A
A
M
G
E
A
S
A
A
L
I
R
HQPLP
A
H
L
R
E
H
GLDEAMLSPRRLSP
1
PsiBlast_PDB
62.43
28%
-50
- C7 -
3LV4
1
?
A:
[343-385]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
----------
L
-
E
K
V
K
K
S
D
V
I
G
D
Y
----------
E
L
V
R
-------
H
G
K
D
I
S
A
D
--
I
--
K
----------
E
--
S
K
E
I
R
L
----
N
Q
N
G
K
--
I
T
G
-
A
V
A
G
T
-
W
K
-
N
T
G
H
N
K
-
I
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
58.35
22%
8
- C5 -
4OY2
1
TAF1_YEAST
A:
[10-502]
NL
N
I
Q
H
S
Q
P
A
I
N
LQSPFYKVAVP
R
Y
Q
L
R
H
FHRENFGSHIRPG
T
K
I
V
F
S
K
L
K
A
RKRKRDKGKD
V
K
E
S
F
STSQDLTIGDTA
P
V
Y
L
M
E
Y
SEQTPV
A
L
S
K
F
G
M
A
N
K
LIN
Y
Y
R
K
ANEQDT
L
R
P
K
L
PV
G
E
T
H
V
L
G
VQDKSPFWNF
G
F
V
E
PG
H
I
V
P
T
L
Y
N
NM
I
R
A
P
V
F
K
H
D
I
SGT
D
F
L
L
T
K
S
S
G
FGI
S
N
R
F
Y
L
R
N
IN
H
L
F
T
V
G
QTFPV
E
E
I
P
G
PNS
R
K
V
T
S
M
K
A
T
R
L
K
M
I
I
Y
R
I
L
N
H
N
HSKAISI
D
P
I
A
K
H
F
PDQD
Y
G
Q
N
R
Q
K
V
K
E
----------
F
M
K
Y
Q
R
D
G
P
E
K
G
L
W
----------
R
L
K
D
-------
D
E
K
L
L
D
-------
N
----------
E
A
V
K
S
L
I
T
P
----
E
Q
I
S
Q
--
V
E
S
M
S
Q
G
L
Q
-
F
Q
-
E
D
N
E
A
Y
-
N
F
D
S
K
L
K
S
L
E
E
N
L
L
P
W
N
I
T
K
N
F
I
N
S
T
Q
MRAMIQIHGVGDPTGCGEGFSF
L
K
T
S
M
KHS
Y
N
V
A
Q
Q
Q
K
A
Y
D
E
E
I
A
K
T
W
Y
T
H
T
K
S
L
S
ISNPFEEMTNPDEIN
Q
T
N
K
H
VKTDRDDK
K
I
L
K
I
V
R
K
K
RDENG
I
I
Q
R
Q
T
I
F
I
RD
P
R
V
I
Q
G
Y
I
K
I
K
E
Q
D
K
EDVN------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
57.50
16%
-21
- C5 -
1XEQ
12
NS1_INBLE
A:
[15-103]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
A
T
N
----------
A
-
T
I
N
F
E
A
G
I
L
E
C
Y
----------
E
R
F
S
W
Q
RALD
Y
P
G
Q
D
R
L
H
R
--
L
--
K
----------
R
K
L
E
S
R
I
K
T
----
H
N
K
S
E
--
P
E
N
-
K
R
M
S
L
-
E
E
-
R
K
A
I
G
V
-
K
M
M
K
V
L
L
FMDPSAGIEGFEPY--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
54.96
27%
41
- C5 -
4OWT
-
INT3_HUMAN
A:
[1-466]
----------------------------------GGRL
L
L
S
T
SLDAKD
E
L
E
E
R
L
E
R
C
M
S
I
V
T
S
M
T
AGVS
E
R
E
A
N
D
A
L
N
A
Y
V
C
KG
L
P
Q
H
E
E
I
C
L
G
L
F
T
L
I
L
T
E
PAQ
A
Q
K
C
Y
R
D
L
A
L
V
SRDGM
N
I
V
L
N
K
I
N
Q
I
L
M
EKYLKLQ
D
T
C
R
T
Q
L
V
W
L
V
R
E
L
V
K
S
GVLG
A
D
G
V
C
M
T
F
M
K
Q
IAGGDVT
A
K
N
I
W
L
A
E
S
V
L
D
I
L
T
E
Q
R
E
W
V
L
K
S
S
I
L
I
A
M
A
V
Y
T
Y
L
R
L
I
V
D
HHGT
A
Q
L
Q
A
L
R
Q
K
E
V
D
F
C
I
S
L
L
R
E
R
F
M
E
C
L
MIG
R
D
L
V
R
L
----------
L
-
Q
N
V
A
R
I
P
E
F
E
L
L
W
K
--------
D
I
I
H
-------
N
P
Q
A
L
S
P
Q
--
F
--
T
----------
G
---
I
L
Q
L
L
----
Q
S
R
T
S
--
R
K
F
-
L
A
C
R
L
T
P
D
M
E
T
K
L
L
F
M
T
S
RVRFGQQ
K
R
Y
Q
D
W
F
Q
R
Q
YLSTPDS
Q
S
L
R
C
D
L
I
R
Y
I
C
GV
V
H
P
S
N
E
V
L
S
SDILP
R
W
A
I
I
G
W
L
L
T
T
CTS
N
V
A
A
S
N
A
K
L
A
L
F
Y
DWLFFSPDKDSIMNI
E
P
A
I
L
V
M
H
H
S
MKPH
P
A
I
T
A
T
L
L
D
F
M
C
R
I
I
P
N
FYPPL
E
G
H
V
R
Q
G
V
F
S
S
L
N
H
I
V
E
K
RVLAHL
A
P
L
F
D
NPKLD
K
E
L
R
A
M
L
R
E
K
FPEFCS---------------------------------------------------------------------------------------------------------------------
17
Fugue
54.00
17%
-42
* C4 *
3GGQ
2
A:
[6-149]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SRPFSVLRAN
D
V
L
W
L
S
L
T
A
A
E
Y
D
QSTY
G
S
S
----------
T
-
G
P
V
Y
V
S
D
S
V
T
L
V
----------
N
V
A
T
-------
G
A
Q
A
V
A
R
S
--
L
DW
T
----------
K
V
T
L
D
G
R
P
L
----
S
T
I
Q
Q
HS
K
T
F
-
F
V
L
P
L
-
R
G
-
K
L
S
F
W
E
-
A
G
TTK
A
G
Y
P
YNYNTT
A
S
D
Q
L
L
V
E
NAAGH
R
V
A
I
S
T
YTTSLGAGPV
S
I
S
A
V
A
V
L
A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
49.61
20%
26
* C5 *
2QDQ
-
A:
[2496-2529]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
G
I
A
----------
Q
I
I
A
-------
A
Q
E
E
M
L
R
K
--
E
--
R
----------
E
L
E
E
A
R
K
K
L
----
A
Q
I
R
Q
--
Q
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
49.50
14%
19
- C5 -
1Y66
7
?
A:
[3-52]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
W
S
E
E
V
E
R
K
L
K
----------
E
F
V
R
-------
R
H
Q
E
I
T
Q
E
--
T
--
L
----------
H
E
Y
A
Q
K
L
G
L
----
N
Q
Q
A
I
--
E
Q
F
-
F
R
E
F
E
-
Q
R
-
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
48.86
17%
-7
- C4 -
2HEQ
-
YORP_BACSU
A:
[1-84]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
G
DPLPKYWSYP
V
-
G
L
A
V
E
I
N
N
N
A
R
Y
GCPHHVG
R
K
G
K
I
I
E
-------
H
L
H
S
A
T
Y
D
Y
A
V
--
S
----------
D
E
T
G
D
I
T
Y
F
----
K
E
H
E
L
--
T
P
L
-
K
G
G
L
A
-
Y
V
-
L
E
H
H
H
H
-
H
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
46.15
15%
12
- C5 -
2JZ1
-
DSX_DROME
A:
[36-76]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
A
D
A
N
I
E
--
E
--
A
----------
S
R
R
I
E
E
G
Q
Y
----
V
V
N
E
Y
--
S
R
Q
-
H
N
L
N
I
-
Y
D
-
G
G
E
L
R
N
-
T
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
40.80
14%
-116
- C7 -
3SC7
-
INU2_ASPFI
X:
[460-473]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
----------
I
-
R
V
L
V
D
T
C
S
V
E
V
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
40.74
33%
-85
- C6 -
3WA2
2
PAOX_ARTGO
X:
[165-183]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
G
----------
L
-
V
A
Y
V
D
V
V
S
K
E
V
T
----------
R
V
I
D
-------
T
G
V
F
P
V
P
A
--
E
--
H
----------
G
N
Y
T
D
P
E
L
T
----
G
P
L
R
T
--
T
Q
K
-
P
I
S
I
T
-
Q
P
-
E
G
P
S
F
T
-
V
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
40.29
14%
-167
* C7 *
1W2T
-
BFRA_THEMA
A:
[380-393]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
----------
I
-
R
A
F
L
D
S
C
S
V
E
F
F
----------
F
N
D
S
-------
I
A
F
S
F
R
I
H
--
P
--
E
----------
N
V
Y
N
I
L
S
V
K
----
S
N
Q
V
K
--
L
E
V
-
F
E
L
E
N
-
I
W
-
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
34.67
63%
400
- C2 -
1UVQ
-
OREX_HUMAN
C:
[6-11]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
L
P
S
-
T
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
34.63
25%
14
* C6 *
2KD2
-
FAIM1_MOUSE
A:
[110-121]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
V
L
E
K
D
T
M
D
V
W
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
25.82
7%
17
- C5 -
2FTX
-
B:
[7-21]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
E
N
I
-
L
K
L
K
L
-
Y
R
-
S
L
G
V
I
L
-
D
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
24.17
36%
16
- C3 -
2EBE
-
?
A:
[54-64]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
--
Q
R
F
-
Y
Q
L
T
L
-
L
V
-
L
T
E
E
P
P
-
E
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
19.15
22%
217
- C1 -
1UNN
-
DPO4_ECOLI
C:
[107-115]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
-
R
Q
L
V
L
-
G
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------