@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs0363: (2015-11-30 )
MKQAETLTSLEQVLKQIKYSLDSYYSFCVKKGFVLKVIPVRENIEEVSYLLNMIESQKDTEISTYYVDKLSKQLKEFVKKLNSWEVKPLFTSEQLSKLTTYSTFLENKE
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..--...---.--...-10-----........----.20........30....---...-----.40---....--....--.50..-....---..60----.-...-----..---------...---70......---------..80..--.-..-------.-----..90..--.....-----.100...-....-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MK--
Q
A
E
---
T
--
L
T
S
-
L
------
E
Q
V
L
K
Q
I
K
----
Y
S
L
D
S
Y
Y
S
F
C
V
KKG
F
V
L
---
K
V
I
-----PV----RE
N
I
--
E
E
V
S
--
Y
L
L
N
M
-
I
E
SQ---KDT-----E-
I
S
T
-----
Y
Y
---------
V
D
K
---
L
S
K
Q
L
K
E
F
---------
V
K
K
LNS--W-E
V
-------
K
-----PLF
T
S
E
--
Q
L
S
K
L
-----
T
T
Y
S
T
F
L-ENKE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
Fugue
60.78
18%
-78
- C5 -
1I6Z
-
A:
[85-219]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
S
P
E
F
M
LIGEKSN
P
E
E
E
V
E
L
K
K
L
K
D
--
L
E
V
---
S
--
A
E
K
-
I
------
A
N
H
L
Q
E
L
N
----
K
E
L
S
G
I
Q
Q
G
F
L
A
K
E
L
Q
A
---
E
A
L
C
K
L
D
R
K
V
----
K
A
T
I
--
E
Q
F
M
--
K
I
L
E
E
-
I
D
T
M
V
L
P
E
Q
F
-----
K
-
D
S
R
-----
L
K
---------
R
K
N
---
L
V
K
K
V
Q
V
F
---------
L
A
E
C
D
T
--
V
-
E
Q
-------
Y
-----
I
C
Q
E
T
E
--
R
L
Q
----------
S
T
N
L
-
A
L
A
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
60.49
20%
-46
- C4 -
4D10
-
CSN8_HUMAN
H:
[14-212]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------F
S
F
K
K
L
L
D
Q
C
E
N
Q
E
L
EAPGGIAT
P
P
V
Y
G
Q
L
L
A
L
Y
L
L
H
ND
M
N
N
A
R
Y
L
W
K
R
IP
P
A
I
K
S
--
A
N
S
---
E
--
L
G
G
-
I
------
W
S
V
G
Q
R
I
W
Q
---
R
D
F
P
G
I
Y
T
T
I
N
A
H
Q
W
S
E
---
T
V
Q
-----
P
I
----
M
E
A
L
--
R
D
A
T
R
R
R
A
F
A
L
-
V
S
Q
A
---
Y
T
S
-----
I
-
I
A
D
-----
D
F
---------
A
A
F
---
V
G
L
P
V
E
E
A
---------
V
K
G
I
L
E
Q
G
W
-
Q
A
D
S
TTR
M
V
L
-----
P
R
K
P
E
Q
--
Q
L
A
R
L
-----
T
D
Y
V
A
F
L
-
E
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
Fugue
59.64
16%
-61
- C6 -
3B4Q
1
?
A:
[4-93]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
N
--
S
A
P
---
T
--
P
R
D
V
V
------
A
N
A
P
A
P
V
Q
----
A
A
V
A
G
A
Q
E
Y
A
A
Q
A
G
L
-------------------
N
T
E
E
--
L
A
V
D
--
A
L
Y
N
A
-
I
K
V
R
---
L
A
G
-----
G
-
I
P
-------------------------
P
Q
I
E
A
F
---------
Y
Q
A
N
R
--------------------------------------
T
N
F
N
G
F
Y
M
A
N
R
G
A
I
D
F
I
F
S------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
Fugue
57.59
18%
-67
* C4 *
3HF7
1
?
A:
[1-127]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KVSVNDI
M
V
--
P
R
N
---
E
--
I
V
G
-
I
DINDD
W
K
S
I
V
R
Q
L
T
----
H
S
--
P
H
G
R
I
V
L
Y
R
D
S
L
D
---
D
A
I
-----
S
M
----
L
R
-
V
--
R
E
A
Y
--
R
L
M
T
E
-
K
K
E
F
---
T
K
E
-----
I
-
M
L
R
A
ADE
I
Y
F
---------
V
P
E
GTP
L
S
T
Q
L
V
K
F
---------
Q
R
N
K
K
K
-------------
V
-----
G
L
V
V
D
E
YG
D
I
Q
G
L
-----
V
T
V
E
D
I
L
-
E
E
I
V
G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
56.55
25%
-49
- C6 -
4YBG
2
MAEL_DROME
A:
[105-197]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
N
M
T
K
L
Y
----
R
N
I
V
D
Y
L
S
K
C
Q
G
K
G
K
T
L
---
V
V
F
-----
T
P
----
A
E
N
I
--
T
M
V
K
--
S
C
F
R
Y
-
L
E
-----
D
D
F
-----
R
-
D
G
-------
K
---------
I
Q
V
---
F
D
I
Q
Y
L
L
F
---------
I
L
K
K
E
V
--
M
-
N
V
-------
A
-----
D
L
-
N
D
E
--
K
I
N
K
F
-----
A
T
D
A
F
F
K
-
K
D
F
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
54.81
43%
45
- C2 -
3WCY
-
INAR1_MOUSE
A:
[149-191]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
D
---
K
K
T
-----
I
-
N
S
T
-----
Y
Y
---------
V
E
K
---
I
P
E
L
L
P
E
T
---------
T
Y
C
L
------
E
V
-------
K
-----
A
I
H
P
S
----
L
K
K
H
-----
S
N
Y
S
T
V
Q
-
C
I
S
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
Fugue
52.98
18%
-35
- C6 -
2LSE
-
?
A:
[1-101]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Q
EE
R
K
K
---
L
--
L
E
K
-
L
------
E
K
I
L
D
E
V
T
----
D
G
A
P
D
-----
E
A
R
E
R
I
E
---
K
L
A
-----
K
D
----
V
K
D
E
--
L
E
E
G
--
D
A
K
N
M
-
I
E
K
F
---
R
D
------
E
-
M
E
Q
-----
M
Y
---------
K
D
A
---
P
N
A
V
M
E
Q
L
---------
L
E
E
I
E
K
--
L
-
L
K
-------
K
-----
A
----
G
--
S
L
V
P
R
-----
G
S
Y
L
E
H
H
-
H
H
H
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
52.79
33%
-52
- C6 -
2PV4
2
?
A:
[59-126]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
L
P
----
D
S
A
S
S
L
F
E
R
C
V
F
H
G
F
Y
L
---
A
N
A
-----
W
I
----
Q
L
S
I
V
A
R
D
I
S
--
E
L
Q
D
T
-
D
E
A
I
---
A
E
Q
-----
E
-
Y
S
G
-----
L
Y
---------
V
R
V
---
A
E
A
A
L
K
E
S
---------
V
K
K
L
K
K
--
A
-
R
T
-------
D
-----
R
S
M
Y
N
S
--
M
R
E
V
M
-----
G
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
Fugue
52.00
20%
-66
- C6 -
3F2E
1
?
A:
[8-90]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
T
A
---
V
--
A
E
Q
-
V
------
S
A
V
L
S
Q
Y
G
----
I
T
G
P
N
R
A
I
Y
---
Q
G
F
G
L
---
K
V
A
-----
R
A
----
L
N
R
L
--
G
G
G
P
--
A
L
V
N
M
-
I
N
G
L
---
K
A
Y
-----
Y
-
I
S
A
-----
F
N
---------
A
N
-----
P
T
V
L
D
A
V
---------
T
D
I
I
T
G
--
S
----------
P
-----
T
G
Y
V
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
50.38
33%
-4
- C6 -
5BV1
-
?
A:
[318-365]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
F
--
A
I
V
G
--
S
L
L
N
T
-
V
A
R
R
---
L
K
S
-----
D
-
Y
E
S
-----
R
H
---------
N
T
K
---
T
T
A
E
L
K
E
F
---------
V
K
K
L
---------------------
P
G
Y
Q
A
E
--
Q
Q
S
L
K
-----
I
H
S
N
I
A
E
-
E
I
I
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
50.05
16%
-35
- C6 -
3N1E
-
VPS54_MOUSE
A:
[2-80]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
--
Q
W
S
---
M
--
L
R
H
-
F
------
D
H
I
T
K
D
Y
H
----
D
H
---------
I
A
E
I
S
A
---
K
L
V
-----
A
I
----
M
D
S
L
--
F
D
K
L
----
L
S
K
-
Y
E
V
-----
K
A
-----
P
-
V
P
S
-----
P
C
---------
F
R
N
---
I
C
K
Q
M
T
K
M
---------
H
E
A
I
F
--------------------
D
L
L
P
E
E
--
Q
T
Q
M
L
-----
F
L
R
I
N
A
S
-
Y
K
L
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
49.59
18%
-59
- C6 -
3VR4
-
NTPA_ENTHA
A:
[517-590]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
---
T
--
F
T
S
-
R
------
E
K
Q
F
N
M
L
K
----
V
I
L
T
-
F
G
K
E
A
R
K
--
A
L
S
---
L
G
A
-----
Y
F
----
N
E
I
M
--
E
G
T
V
--
A
V
R
E
R
-
I
S
R
S
---
K
Y
I
-----
P
E
E
E
L
-----
A
K
---------
I
S
S
---
I
N
E
E
I
K
E
T
---------
I
Q
L
I
V
S
--
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
47.88
22%
-38
- C4 -
4IY4
-
CNNM2_HUMAN
A:
[1-152]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K
E
E
L
N
I
I
--
Q
G
A
L
E
L
R
--
T
K
T
-
V
------
E
D
V
M
T
P
L
R
DCFM
I
T
G
E
A
I
L
D
F
N
T
M
S
E
I
M
E
S
GY
T
R
I
-----
P
V
F
E
GE
R
S
N
I
--
V
D
L
L
--
F
V
K
D
L
-
A
F
V
D
---
P
D
D
CTP
L
K
T
-
I
T
K
-----
F
Y
N
H
P
L
H
F
V
F
N
D
T
K
---
L
D
A
M
L
E
E
F
K
K
G
KSH
L
A
I
V
Q
R
V
N
N
--
E
G
E
G
-------
D
-----
P
F
Y
E
V
L
--
G
I
V
I
L
-----
E
D
V
I
E
E
I
-
I
K
S
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
46.86
33%
3
- C6 -
4JC8
-
?
A:
[318-365]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
F
--
A
I
V
G
--
S
L
L
N
T
-
V
A
R
R
---
L
K
S
-----
D
-
Y
E
S
-----
R
-----------------
T
A
E
L
K
E
F
---------
V
K
K
L
---------------------
P
G
Y
Q
A
E
--
Q
Q
S
L
K
-----
I
H
S
N
I
A
E
-
E
I
I
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
Fugue
46.83
16%
-36
* C5 *
2A10
-
CCMK4_SYNY3
A:
[4-107]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q
S
A
V
G
--
S
I
E
---
T
I
G
F
P
G
-
I
------
L
A
A
A
D
A
M
V
----
K
A
G
R
I
T
I
V
G
Y
I
R
A
G
S
A
R
---
F
T
L
-----
N
I
----
R
G
D
V
--
Q
E
V
K
--
T
A
M
A
A
G
I
D
A
I
---
N
R
T
-----
E
-
G
A
D
------------------------------------------
V
K
T
--
W
-
V
I
-------
I
-----
P
R
P
H
E
N
--
V
V
A
V
L
PIDFS
P
E
V
E
P
F
R
-
E
A
A
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
46.34
33%
-3
- C6 -
5BUZ
-
?
A:
[318-365]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
F
--
A
I
V
G
--
S
L
L
N
T
-
V
A
R
R
---
L
K
S
-----
D
-
Y
E
S
-----
R
H
---------
N
T
K
---
T
T
A
E
L
K
E
F
---------
V
K
K
L
---------------------
P
G
Y
Q
A
E
--
Q
Q
S
L
K
-----
I
H
S
N
I
A
E
-
E
I
I
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
45.86
33%
-12
- C6 -
5BV0
-
?
A:
[318-365]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
F
--
A
I
V
G
--
S
L
L
N
T
-
V
A
R
R
---
L
K
S
-----
D
-
Y
E
S
-----
R
H
---------
N
T
K
---
T
T
A
E
L
K
E
F
---------
V
K
K
L
---------------------
P
G
Y
Q
A
E
--
Q
Q
S
L
K
-----
I
H
S
N
I
A
E
-
E
I
I
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
Fugue
45.35
16%
-23
- C6 -
4XDN
5
SCC4_YEAST
A:
[24-640]
G
D
K
L
S
I
S
Q
V
Y
H
L
A
Q
E
Y
R
D
H
A
Y
S
I
A
NKIGS
E
E
G
L
K
Q
Y
Y
G
L
M
N
M
S
I
Q
M
F
Q
L
L
K
T
KCTLS
V
L
E
D
S
K
V
T
F
E
M
V
E
L
L
I
Q
ETYN
F
D
L
A
E
L
Y
I
S
S
L
K
E
R
L
Q
T
H
QSDTDL
V
E
E
I
M
R
C
E
F
L
L
L
H
D
L
P
L
M
R
DS
K
F
H
Y
K
I
A
L
R
N
C
N
E
L
V
Q
Y
M
V
N
LQD
E
L
Y
Q
N
W
A
S
V
F
Q
Y
V
G
V
M
L
C
I
K
L
KQ
H
R
R
V
K
T
S
F
H
G
L
L
S
Q
CREKS
Q
W
K
W
F
L
N
L
C
Y
V
N
Y
L
L
N
E
RFPIP
E
D
A
L
Q
E
L
R
S
TELHTVG
P
E
L
Y
A
W
K
L
A
L
E
M
V
I
Q
L
C
--
K
D
G
---
N
--
I
T
D
-
H
------
L
N
E
F
K
N
F
F
----
D
T
N
K
Q
S
L
V
T
N
E
G
K
G
C
V
I
---
K
I
M
-----
P
R
----
I
A
L
K
--
V
E
L
P
--
M
I
F
H
-------------------
Y
K
E
-----
L
K
---------
N
I
L
---
L
L
L
Q
S
V
S
Y
---------
I
V
--
N
C
--
Y
-
D
E
-------
K
-----
G
N
F
S
R
K
--
F
L
P
K
V
-----
Y
S
T
T
Q
K
L
-
I
K
N
I
A
A
G
GVS
M
N
E
L
D
S
R
I
Q
T
Y
K
S
I
L
E
F
C
E
F
Y
K
V
W
E
Q
T
L
L
K
GAVVLGPSPG
Y
V
R
L
L
Q
A
M
K
V
Q
F
E
GGGA
V
E
E
Y
T
R
L
A
Q
SGGTS
S
E
V
K
M
I
S
L
L
N
C
Y
T
V
Q
A
A
R
V
S
R
CSGDK
Q
G
E
L
V
E
Q
C
N
K
V
W
L
Q
V
E
K
L
L
Q
E
T
DLQFN
P
I
W
E
C
T
V
T
I
L
W
L
F
S
H
F
EPFSWNPLPCS
D
K
Q
R
A
E
Y
V
S
K
L
R
E
F
Y
S
S
N
KFVNRFKLKKA
L
L
L
Q
I
L
V
N
Y
L
G
G
R
M
LEHD
L
G
E
I
Y
A
I
S
A
K
C
F
D
M
C
R
QQGGM
R
K
V
Q
Y
V
I
G
I
W
H
L
M
N
C
T
V
A
MR
G
K
D
V
A
L
T
N
A
K
L
E
A
L
V
K
Q
I
T
S
30
HHSearch
42.92
22%
-24
- C6 -
1SZ9
-
PCF11_YEAST
A:
[101-132]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
R
T
K
L
---------
I
N
M
F
K
L
--
W
-
L
N
-------
P
NDTGL
P
L
F
E
G
S
--
A
L
E
K
I
-----
E
Q
F
L
I
K
A
-
S
A
A
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
42.25
23%
-12
- C6 -
2XF7
-
?
A:
[22-43]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
L
R
V
A
---------
V
N
-----------------
A
-----
G
D
L
T
Q
E
--
E
A
D
K
I
-----
M
S
Y
P
W
G
A
-
W
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------