@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs0364: (2015-11-30 )
MGSKATFHIGTIIKTHYLFNFFRKQGIVAMTQEEIDQMIEDWISNGFPDELKRLIPDEE
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------.........10.-...----....20.....-.----..-------30.-----........40..--.-.----.----..-.50......-----..-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------MGS
K
A
T
F
H
I
G
T
I
-
I
K
T
----
H
Y
L
F
N
F
F
R
KQG-
I
----
V
A-------M-
T
-----
Q
E
E
I
D
Q
M
I
E
D
W
I
--S-N----G----F
P
-
D
E
L
K
R
LIPD-----EE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
73.16
22%
-178
- C3 -
1QZM
-
LON_ECOLI
A:
[503-548]
---------------------------------------------------------------------------------------------------------------------------------------------
K
R
----
H
L
L
P
K
Q
I
E
R
N
A
-
L
KKGE
L
T
-------
V
-
D
-----
D
S
A
I
I
G
I
I
R
Y
Y
T
R-
E
-
A
----
G
----
V
R
--
G
L
E
R
E
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
68.78
22%
-109
- C3 -
2JVE
-
?
A:
[18-88]
-----------------------------------------------------------------------------------------------------------------------M
A
L
K
C
F
T
R
N
G
D
D
R
T
V
T
T
C
A
E
-
E
Q
T
----
R
C
L
F
V
Q
L
P
Y
S
E
-
I
----
Q
E
-------
C
K
T
-----
V
Q
Q
C
A
E
V
L
E
E
V
T
--
A
-
I
----
G
----
Y
P
---
A
K
C
C
C
E
D
LCNRS
E
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
66.85
31%
-91
- C3 -
3FFZ
-
BXE_CLOBO
A:
[789-834]
--------------------------------------------------------------------------------------------------------------------------------------------
V
K
T
-----
Y
L
L
N
Y
I
I
Q
H
G
S
I
----
L
G
-------
E
-
S
-----
Q
Q
E
L
N
S
M
V
T
D
T
L
--
N
-
N
----
S
----
I
P
-
F
K
L
S
S
Y
T
D
D
-----
K
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
65.87
42%
-88
- C3 -
3LLR
-
DNM3A_HUMAN
A:
[130-152]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
K
P
M
I
-
E
W
A
--
L
-
G
----
G
----
F
Q
P
S
G
P
K
G
L
E
P
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
64.69
21%
-58
- C3 -
2KSW
-
?
A:
[1-66]
-----------------------------------------------------------------------------------------------------------------------------VP
V
G
S
D
C
E
P
K
L
C
T
M
D
L
V
P
----
H
C
F
L
N
--
P
E
K
G
-
I
----
V
V
-------
V
-
H
-----
G
G
C
A
L
S
K
Y
K
C
Q
N
--
P
-
N
HEKL
G
----
Y
T
-
H
E
C
E
E
A
I
K
N
-----
A
P
RP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
64.52
19%
-92
- C3 -
1EJ5
-
A:
[1-107]
---------------------------------------------------------------------------------------------------------------------SG
F
K
H
V
S
HVG
W
D
P
Q
N
G
F
D
V
N
N
---
L
D
----
P
D
L
R
S
L
F
S
R
A
G
-
I
S
E
--
A
Q
-------
L
-
T
-----
D
A
E
T
S
K
L
I
Y
D
F
I
--
E
D
Q
----
G
----
G
L
-
E
A
V
R
Q
E
M
R
R
-----
Q
G
G
SGGSQSSEG
L
V
G
A
L
M
H
V
M
Q
KRSRAIHSSDEGEDQAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
62.49
15%
-87
- C3 -
2QSR
-
?
A:
[1005-1165]
--------------------------------------------------------------------------------------------------------------------------SLRT
K
G
N
A
E
L
I
L
Q
I
D
A
Y
-
L
P
D
----
T
Y
I
S
D
Q
R
H
K
I
E
-
I
----
Y
K
-------
K
-
I
R
Q
IDN
R
V
N
Y
E
E
L
Q
E
E
L
I
--
D
-
R
FG--
E
----
Y
P
-
D
V
V
A
Y
L
L
E
I
-----
G
L
V
K
S
Y
L
D
K
V
FVQ
R
V
E
R
K
DN
K
I
T
I
Q
F
E
KVTQRLFL
A
Q
D
Y
F
K
A
L
S
V
TN
L
K
A
G
I
A
E
N
KG
L
M
E
L
V
F
DVQNKK
D
Y
E
I
L
E
G
L
L
I
F
G
E
S
L
L
E
I
K
E
SKE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
58.63
16%
-90
- C3 -
4R4E
1
GLNR_BACSU
A:
[1-83]
--------------------------------------------------------------------------------------------------------------------------M
S
D
N
I
R
R
S
M
P
L
F
P
I
G
I
V
-
M
Q
L
TELS
A
R
Q
I
R
Y
Y
E
E
N
G
-
L
----
I
F
-------
P
-
A
-----
R
T
E
G
N
R
R
L
F
S
F
H
--
D
-
V
----
D
----
K
L
-
L
E
I
K
H
L
I
E
Q
-----
G
V
N
M
A
G
I
K
Q
I
L
A
K
A
E
A
E--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
49.36
22%
0
- C2 -
1N7V
3
P2_BPPRD
A:
[1-555]
A
N
F
N
V
P
KL
G
V
F
P
VA
A
V
F
D
IDNVPEDSSATGSRWLPSIYQGGNYWGGGP
Q
A
L
H
A
Q
V
S
NFDSSNRLPY
N
P
R
T
ENNPAGNCA
F
A
F
N
P
F
G
Q
YISN
I
S
S
A
Q
S
V
H
R
R
I
Y
GIDLN
D
E
P
L
F
S
P
N
A
A
S
I
T
NGGNP
T
M
S
Q
D
T
G
Y
H
N
I
G
P
-
I
N
T
----
A
Y
K
A
E
I
F
R
P
V
N
-
P
----
L
P
-------
M
-
S
-----
D
T
A
P
D
P
--------
E
-
T
----
L
----
E
P
-
G
Q
T
E
P
L
I
K
S
-----
D
G
V
Y
S
N
S
G
I
A
S
F
I
F
DRPVTEPNPNWPPLPPPVIPIIYPTPALG
I
G
A
A
A
A
Y
GF
G
Y
Q
V
T
V
Y
R
W
E
E
I
P
V
E
FLNPE
G
S
P
C
A
Y
E
A
G
I
I
L
V
R
QTSNPMN
A
V
A
G
R
L
V
P
Y
V
E
D
I
A
V
D
I
F
L
T
G
K
F
F
T
L
N
P
P
L
R
I
T
N
N
Y
F
A
DD
E
V
K
E
N
T
V
T
I
G
NYTTTLSSAY
Y
A
V
Y
K
T
DGYG
G
A
T
C
F
I
A
SGGAGISAL
V
Q
L
Q
DNSVL
D
V
L
Y
Y
S
L
P
LSLGGS
K
A
A
I
D
E
W
V
A
N
N
CGLFPMSGG
L
D
K
T
T
L
L
E
I
P
R
R
Q
L
E
AINPQDGPGQY
D
L
F
I
L
D
DSGAYASF
S
S
F
I
G
Y
P
E
AAYYVAGAATFMDVEN
P
D
E
I
I
F
I
L
RNGA
G
W
Y
A
C
E
IGDALKIADD
E
F
D
S
V
D
Y
F
A
Y
R
GG
V
M
F
I
G
S
A
R
Y
T
EGGDPL
P
I
K
Y
R
A
I
I
P
GLP
31
Fugue
44.83
36%
-29
- C3 -
5CMZ
-
?
B:
[2-33]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
-
T
-----
W
E
E
W
D
K
K
I
E
E
L
I
K
K
S
-
E
----
E
----
L
I
-
K
K
I
E
E
Q
I
K
K
-----
Q
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
43.97
20%
-102
- C3 -
3RGC
-
?
A:
[54-88]
-----------------------------------------------------------------------------------------------------------------------------------------
V
L
-
I
N
E
----
K
M
E
I
S
Q
M
K
Q
L
G
-
I
----
V
V
---------
N
-----
D
L
E
L
D
D
A
I
N
K
M
L
--
A
-
Q
----
N
----
K
T
-
T
L
N
A
F
K
A
N
L
-----
K
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
40.83
24%
-33
- C3 -
1VAZ
-
A:
[16-59]
---------------------------------------------------------------------------------------------------------------------------------------------------------
L
W
K
T
G
-
F
----
S
L
D
NGDLRS
Y
-
Q
-----
D
P
S
N
A
Q
F
L
E
S
I
R
--
R
-
G
----
E
----
V
P
-
A
E
L
R
R
L
A
H
G
-----
G
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
40.44
18%
-74
- C- -
2I5U
-
?
A:
[1-28]
----------------------------------------------------------------------------------------------------------------------------------------------------
A
I
R
S
I
W
E
N
N
G
-
F
----
G
L
-------
M
-
S
-----
S
K
T
M
-
T
D
F
D
Y
W
I
--
S
-
D
----
F
----
E
K
-
I
G
A
S
Q
K
E
A
E
-----
Q
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
40.31
23%
-73
- C3 -
1J5Y
-
NIAR_THEMA
A:
[162-183]
---------------------------------------------------------------------------------------------------------------------------------------------------------------
I
----
E
A
-------
P
-
D
-----
E
E
T
M
E
R
I
M
R
E
L
K
--
K
-
K
----
G
----
F
L
-
I
E
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
37.91
20%
-51
- C3 -
2KRX
-
?
A:
[22-55]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
F
-------
L
-
T
-----
T
I
E
L
L
E
K
L
K
G
E
L
--
E
-
K
----
I
SFSD
L
P
-
L
E
L
Q
K
L
D
S
L
-----
P
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
37.30
36%
-39
- C3 -
2PL9
-
CHEZ_SALTY
D:
[1-19]
------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
-
V
----
V
A
---------
S
-----
Q
D
Q
V
D
D
L
L
D
S
------
L
----
G
----
F
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
30.64
38%
-38
- C1 -
3ZDL
-
AB1IP_HUMAN
B:
[7-17]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
I
D
Q
M
F
S
T
L
L
--
G
-
E
----
M
----
D
L
-
L
T
Q
S
L
G
V
D
T
-----
L
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
27.08
33%
-39
- C3 -
2HSA
-
OPR3_SOLLC
B:
[158-175]
---------------------------------------------------------------------------------------------------------------------------------------------------------------
P
----
R
A
-------
I
-
G
-----
T
Y
E
I
S
Q
V
V
E
D
Y
R
--
R
-
S
----
A
----
L
N
-
A
I
E
A
G
F
D
G
I
-----
E
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
25.32
26%
-31
- C3 -
2R14
-
?
A:
[152-170]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
T
-
P
----
R
A
-------
L
-
E
-----
T
D
E
I
P
G
I
V
E
D
Y
R
--
Q
-
A
----
A
----
Q
R
-
A
K
R
A
G
F
D
M
V
-----
E
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
23.79
20%
-19
- C3 -
1ICP
1
OPR1_SOLLC
A:
[153-172]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
R
-
P
----
R
R
-------
L
-
T
-----
T
D
E
I
P
Q
I
V
N
E
F
R
--
V
-
A
----
A
----
R
N
-
A
I
E
A
G
F
D
G
V
-----
E
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------