@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs0365: (2015-11-30 )
MGTVNIQVEIDPEAYVTGLEHAKETKLMPEELLEGENNG
Atome Classification :
(19 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........-10.---.--------.....-----.--20....-....30---.........-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGTVNIQVE-IDP---E--------AYVTG-----L--EHAKET-KLMPE----ELLEGENNG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
86.14
18%
-47
- C5 -
4EYT
-
?
A:
[10-106]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KQNC
L
I
K
I
I
NIPQGTL
K
A
E
V
V
L
A
V
R
H
L
G
Y
-
E
F
Y
C
D
-
Y
I
D
---
G
--------
Q
A
M
I
R
-----
F
--
Q
N
S
D
E
Q
-
R
L
A
I
Q
----
K
L
L
N
H
N
N
N
K
L
Q
I
E
I
RG
Q
I
C
D
V
I
STIP
E
D
E
E
K
N
Y
W
N
Y
I
K
F
KKN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
81.35
23%
-8
- C5 -
4UIR
3
OLHYD_ELIME
A:
[2-646]
NPITSKF
D
K
V
L
N
A
SSEYGHVNHEPDSSKEQ
Q
R
N
T
PQKSMPFSDQIGNYQR
N
K
G
I
P
VQSYDN
S
K
I
Y
I
I
G
SG
I
A
G
M
S
A
A
Y
Y
F
I
R
DGHVPAKN
I
T
F
L
E
QLHIDGGSL
D
G
A
G
N
PTD
G
Y
I
I
R
G
G
R
E
M
D
MTY
E
N
L
W
D
M
FQDIPALEMPAPYS
V
L
D
E
Y
R
L
I
N
D
N
D
S
N
Y
S
KARLINNK
G
E
I
K
DFSKFGLN
K
M
D
Q
L
A
I
I
R
L
L
L
KNKEELDDLTIEDYFS
E
S
F
L
K
S
N
F
W
T
F
W
R
T
M
F
AFENWHS
L
L
E
L
K
L
Y
M
H
R
F
L
HAIDGLNDLSS
L
V
F
P
KYNQYDTF
V
T
P
L
R
K
F
L
Q
E
K
G
V
N
I
H
L
NTLVK
D
L
D
I
H
I
N
TE
G
K
V
V
E
G
I
I
T
EQDG
K
E
V
K
I
P
V
G
KN
D
Y
V
I
V
TTGSMTED
T
F
Y
G
NNKTAPIIGIDNSTSGQSA
G
W
K
L
W
K
N
L
A
A
K
SEIFGKPEKFCSNIEKS
A
W
E
S
A
T
L
TCKPS
A
L
I
D
K
L
K
E
Y
SVNDPYSGKTVTG
G
I
I
T
ITDSNWL
M
S
F
T
C
N
RQPHFPEQPDD
V
L
V
L
W
V
Y
A
LFMDKEGNYIKKTMLECT
G
D
E
I
L
A
E
L
C
Y
H
L
GIEDQ
L
E
N
V
Q
K
N
T
I
V
R
T
A
F
M
PYITSMFMPRAKGD
R
P
R
VVPEGCKN
L
G
L
V
G
QFVETN
N
D
V
V
FT
M
E
S
S
V
R
T
A
R
I
A
V
Y
K
L
L
N
L
N
K
Q
V
P
D
I
N
P
---
L
--------
Q
Y
D
I
R
-----
H
--
L
L
K
A
A
K
-
T
L
N
D
D
----
K
P
F
V
G
E
G
L
L
R
K
V
LKGTYFEHVLPAGEEHESF
I
A
E
H
V
N
K
F
R
E
W
V
K
G
IRG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
73.54
23%
-48
- C5 -
3POH
1
?
A:
[17-451]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GIYEN
N
A
Y
L
R
DGKSNLV
S
K
V
V
E
L
HGE
T
Y
A
T
T
V
K
M
G
L
SKTP
N
T
A
T
S
A
K
V
K
-
I
D
A
---
A
--------
Y
L
E
T
Y
-----
N
--
K
A
H
N
T
D
F
A
L
Y
P
Q
----
D
L
V
T
F
A
N
E
G
I
L
T
V
N
ANTK
S
A
E
V
E
M
T
I
R
A
G
E
GLQED
K
T
Y
A
I
P
V
A
I
S
DQSSDITIKD
E
D
A
K
H
C
I
Y
L
V
K
D
MRNAGDAYKGEG
V
M
Q
G
Y
L
F
F
EVNDVNPLNTLSFQLENGKLLWDVVVLF
A
A
N
I
N
Y
DAEAG
R
P
R
V
Q
C
N
P
N
V
Q
Y
L
L
D
N
NETLL
Q
P
L
R
R
R
G
V
K
V
L
L
G
L
L
G
N
HDITGLA
Q
L
S
E
Q
G
A
K
D
F
A
R
E
V
A
Q
Y
C
K
A
Y
NLD
G
V
N
Y
D
DEYSNSPDLSNPSLTNPS
T
A
A
A
A
R
L
C
Y
E
T
K
Q
A
MPD
K
L
V
T
V
FDWGQMYGVATVDGVDAKEWID
I
V
V
A
N
YG
S
A
A
Y
P
I
GQMTKKQCSGISMEFNLGGGGSLS
A
S
K
A
Q
S
M
I
D
G
GYG
W
F
M
G
F
APSPAK
Y
G
S
V
F
S
R
L
QG
G
G
E
V
L
YGSNVAAPT
I
F
Y
K
K
NDP
T
P
Y
K
Y
PDDL
12
Fugue
70.51
10%
-69
- C5 -
4E1P
-
LSR2_MYCTU
A:
[4-58]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KVTVTLVDDFDGSG
A
A
D
E
T
V
E
F
G
-
L
D
G
---
V
--------
T
Y
E
I
D
-----
L
S
T
K
N
A
T
K
L
-
R
G
D
L
K
----
Q
W
V
A
A
G
R
R
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
64.90
17%
6
- C3 -
1R75
-
?
A:
[12-132]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VTFKNGKPTVKGT
K
T
Y
P
M
FSNI
L
Y
R
I
A
D
TEAR
R
W
A
F
Y
N
DSKE
L
I
I
H
V
A
V
L
F
D
YD
S
Q
I
V
P
L
GD
T
T
A
F
R
I
G
K
Y
L
C
E
V
D
-
V
R
P
L
E
T
Q
--------
M
F
V
E
G
-----
S
--
V
T
G
W
R
V
-
D
T
L
E
A
----
R
T
A
E
D
E
R
G
Y
R------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
58.14
13%
-9
- C4 -
2EQP
-
TNR12_HUMAN
A:
[1-50]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
S
G
S
S
G
E
-
Q
A
P
---
G
TAPCSRG
S
S
W
S
A
D
-----
L
--
D
K
C
M
D
C
-
A
S
C
R
A
R
PHS
D
F
C
L
G
C
A
A
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
56.13
24%
19
* C5 *
2E74
3
PETN_MASLA
H:
[1-29]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
-
I
D
V
---
L
--------
G
W
V
A
L
-----
L
--
V
V
F
T
W
S
-
I
A
M
V
V
----
W
G
R
N
G
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
54.77
18%
52
- C5 -
2DCO
-
A:
[1-34]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
Y
D
------
A
Y
---
R
--------
T
D
C
E
E
-----
L
--
S
G
A
R
T
F
-
R
L
A
P
A
----
Q
W
S
C
R
E
T
F
Q
A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
49.96
33%
-54
- C5 -
3AXJ
-
?
A:
[135-146]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
-
L
D
V
---
E
--------
D
Y
L
L
G
-----
I
--
L
Q
L
A
S
E
-
L
S
R
F
A
----
T
N
S
V
T
M
G
D
Y
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
49.32
10%
-51
- C5 -
3J9T
-
VA0D_YEAST
Q:
[11-31]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
F
I
E
G
-----
V
--
V
R
G
Y
R
N
-
G
L
L
S
N
----
N
Q
Y
I
N
L
T
Q
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
Fugue
49.29
12%
-15
- C5 -
1G5J
-
B:
[1-25]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
L
W
A
A
-----
Q
--
R
Y
G
R
E
L
-
R
R
M
S
D
----
E
F
V
D
S
F
K
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
49.15
20%
-58
- C5 -
1V9M
-
VATC_THET8
A:
[6-25]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
Y
L
N
A
-----
R
--
V
R
V
R
R
G
-
T
L
L
K
E
----
S
F
F
Q
E
A
L
D
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
46.91
22%
-22
- C5 -
2JRF
-
TPPP3_HUMAN
A:
[68-85]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
-
I
N
Y
---
E
--------
E
F
K
K
A
-----
L
--
E
E
L
A
T
K
-
R
F
K
G
K
----
S
K
E
E
A
F
D
A
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
46.45
31%
-61
- C6 -
3HLU
-
?
A:
[61-75]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
L
L
K
E
-
V
D
P
---
D
--------
A
F
M
I
V
-----
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
40.43
31%
-49
- C5 -
3ZC0
-
?
A:
[104-116]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
-
V
T
P
---
A
--------
A
F
L
N
G
-----
F
--
A
A
A
V
G
E
-
L
R
R
Y
A
----
L
T
K
L
I
E
G
D
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
39.34
32%
-4
* C6 *
1ZR6
1
?
A:
[459-481]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
K
A
K
-
Y
D
P
---
E
--------
D
V
F
G
N
VVSVE
P
--
I
A
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
35.61
54%
58
- C1 -
2R41
-
?
A:
[94-105]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
R
E
T
-
I
L
L
P
A
----
E
M
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
27.70
5%
89
- C5 -
1M2S
-
KA162_MESMA
A:
[1-37]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
G
L
I
D
V
K
C
F
-
A
S
S
---
E
--------
C
W
T
A
C
-----
K
--
K
V
T
G
S
G
-
Q
-
G
K
C
----
Q
N
N
Q
C
R
C
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
6.18
7%
47
- C2 -
1I3J
2
A:
[20-31]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
--
F
C
K
C
G
V
-
R
I
Q
T
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------