@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs0374: (2015-11-30 )
MVVLGKLPDGIFTLLRFNDEGGQLTHISESEALWLTLELAPEKMDCI
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.....-..-..10.......------------.20---..-......-30-----........40....--..-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
VLG-KL-P
D
G
I
F
T
L
L
R
FN------------DEG---G
Q
-
L
T
HISE-S
E
-----
A
L
W
L
T
L
E
LAPEKMD--CI-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
84.29
21%
-75
* C7 *
1IMU
-
RAIA_HAEIN
A:
[1-107]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
T
L
N
I
T
S
K
Q
M
D
I
T
P
A
I
R
E
H
L
E
E
R
L
A
K
L
G
KWQTQLI
S
P
H
F
V
L
N
-
K
V
-
P
N
G
F
S
V
E
A
S
I
G
------------
T
P
L
---
G
N
-
L
L
A
S
A
T
-
S
D
-----
D
M
Y
K
A
I
N
E
V
E
E
K
L
E
--
R
Q
L
N
K
L
Q
H
KSESRRADERLKDSFEN------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
81.35
35%
-126
- C7 -
4ZOX
-
SQT1_YEAST
A:
[3-381]
----------------------------------------------------------------------------------------------------------------------------------------MSNNSL
T
Y
F
D
KHTDSVF
A
I
G
H
H
PNLP
L
V
C
T
G
GGDN
L
A
H
L
W
T
SHSQPPKFA
G
T
L
T
GYGESVI
S
C
S
F
T
SEGG
F
L
V
T
A
D
MSG
K
V
L
V
H
M
G
Q
KGGAQWKLA
S
Q
M
Q
EVEEIV
W
L
K
T
HPTIAR
T
F
A
F
G
A
TDG
S
V
W
C
Y
Q
I
N
EQDG
S
L
E
Q
L
M
S
G
F
VHQQDCS
M
G
E
F
I
NTDKGENT
L
E
L
V
T
C
-
S
L
-
D
S
T
I
V
A
W
N
C
F
T
--------------
G
---
Q
Q
-
L
F
K
I
T
Q
-
A
E
IKGLE
A
P
W
I
S
L
S
L
A
P
E
T
L
T
--
K
G
NS
G
V
V
A
C
G
S
NNG
L
L
A
V
I
N
CNNGGAIL
H
L
S
T
V
I
E
L
K
PEQDELDASIE
S
I
S
W
S
SKFS
L
M
A
I
G
L
VCG
E
I
L
L
Y
DTSAWRVR
H
K
F
V
L
EDSVT
K
L
M
F
D
ND
D
L
F
A
S
C
ING
K
V
Y
Q
F
NARTGQEK
F
V
C
V
GHNMGVL
D
F
I
L
L
H
PVANTG
T
E
Q
K
R
K
V
I
T
A
G
DEG
V
S
L
V
F
E
V
P
N-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
79.73
27%
-131
- C7 -
1IKP
4
TOXA_PSEAE
A:
[2-606]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EEAFDLWNECAK
A
C
V
L
D
LKD
G
V
R
S
S
R
M
S
V
D
P
A
I
A
D
TN
G
Q
G
V
L
H
Y
S
M
V
L
E
GGND
A
L
K
L
A
IDNA
L
S
I
T
S
DGL
T
I
R
L
E
G
G
VEPNKPV
R
Y
S
Y
T
R
QAR
G
S
W
S
L
N
W
L
V
P
I
G
H
E
K
-
P
S
N
I
K
V
F
I
H
E
L
------------
N
A
G
---
N
Q
-
L
S
H
M
S
P
----------
I
Y
T
I
E
M
G
D
E
L
L
A
--
K
L
A
R
D
A
T
F
F
V
R
A
H
ESNEM
Q
P
T
L
A
I
S
H
A
G
V
S
V
V
M
A
QKRW
S
E
W
A
S
GKVLCLLDQLDG
V
Y
N
Y
L
A
QQRCNLD
D
T
W
E
G
K
I
Y
R
V
LAGNPAKHDLDIKPT
V
I
S
H
R
L
H
F
PEGG
S
L
A
A
L
T
A
H
Q
A
C
HLPLETFTRH
R
Q
P
R
GA
E
Q
L
E
Q
C
G
Y
P
V
Q
R
L
V
A
L
Y
L
A
A
RLSWNQ
V
D
Q
V
I
R
N
A
L
A
S
PGSGG
D
L
G
E
A
I
R
E
Q
P
E
Q
A
R
L
A
L
T
L
A
A
A
E
S
E
R
F
V
R
QGTGND
E
A
G
A
A
N
A
D
V
V
S
L
TCPVAA
G
E
C
A
G
P
ADSGD
A
L
L
E
R
N
Y
PTGAEFLGDG
G
D
V
S
F
S
TRGTQNWT
V
E
R
L
L
Q
A
H
R
Q
L
E
E
R
GYVFV
G
Y
H
G
T
F
L
E
A
A
Q
S
I
V
FG
G
V
R
A
R
S
Q
DLDAIWR
G
F
Y
I
A
GD
P
A
L
A
Y
G
Y
AQDQEPDARG
R
I
R
N
G
A
L
L
R
V
Y
V
PRSSLPG
F
Y
R
T
SLTLAAPE
A
A
G
E
V
E
R
L
I
GHPLPLRL
D
A
I
T
G
P
EEEG
G
R
L
E
T
I
L
G
W
P
L
A
E
R
T
V
V
I
P
S
A
I
P
T
D
PRNVGGDLDPSSIP
D
K
E
Q
A
I
SALPDYASQPGK
34
Fugue
69.30
27%
-92
- C7 -
1I8N
2
LAPP_HAEOF
A:
[37-125]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ETITAGNE
D
C
W
S
K
R
P
G
W
-
K
L
-
P
D
N
L
L
T
K
T
E
F
T
S
V
----------
D
E
C
---
R
K
-
M
C
E
E
S
A
-
V
E
-----
P
S
C
Y
I
L
Q
I
N
T
E
T
N
E
--
C
Y
R
NNEGDVTWSSLQYDQPN
V
V
Q
W
H
L
H
A
C
S-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
67.69
25%
-43
- C7 -
4F0L
2
?
A:
[11-458]
-------------Q
H
F
I
H
A
R
Q
A
L
L
PDGWAEN
V
R
I
G
I
A
GGVIC
S
I
E
T
GVLAGPD
D
E
R
Q
S
V
V
V
A
GMANLHSHAFQYGMAGLAERRGPSADSF
W
S
W
R
E
I
M
Y
K
F
A
L
T
MT
P
E
Q
A
E
A
V
A
L
R
L
Y
V
D
M
L
E
A
GFTRVGEFHYLHHDCDGTPYANLS
E
M
A
D
R
I
A
A
A
A
T
T
A
GMGLT
L
L
P
V
F
Y
A
H
SGFGGAAANEGQRRFIND
P
E
R
F
A
R
L
I
E
G
C
R
K
T
L
EGFEG
A
V
L
G
V
A
PHSLRAVT
P
D
E
L
D
S
V
T
Q
L
LPD
A
P
V
H
I
H
V
AEQ
V
K
E
V
E
D
C
I
A
W
SGKR
P
V
E
W
L
L
D
H
Q
DVTAR
W
C
L
I
HATHMS
D
E
E
T
K
H
M
A
K
A
GAIAGLC
P
V
T
E
A
-
N
L
-
G
D
G
T
F
N
A
T
E
F
A
------------
A
A
G
---
G
K
-
F
G
I
G
S
D
-
S
N
--------
V
L
I
G
I
G
D
E
L
R
Q
--
L
E
Y
S
Q
R
L
Y
H
RARNVLAANEGS
T
G
R
A
L
F
D
G
A
V
L
G
G
N
I
A
M
GRPEDGLKKGASA
D
F
V
S
L
DVERLPHAK
G
D
V
V
L
D
G
W
I
FAGR
A
H
V
C
D
VWVRGVKQVEGGRHRL
R
D
E
A
E
R
A
F
Q
K
A
L
G
E
L
L
A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
65.34
21%
-127
- C7 -
4P5F
1
?
A:
[8-374]
LT
P
T
E
A
A
V
L
R
E
L
R
L
H
RPQLPL
D
T
L
L
F
T
D
P
NKDP
D
D
V
V
T
Y
T
I
A
K
Q
L
Q
A
D
GFLRLT
D
V
V
V
T
L
G
D
A
D
M
R
S
Q
R
A
Q
L
A
K
G
V
F
D
R
L
ALPD
V
R
V
A
R
G
Q
D
Y
P
MT
S
T
Q
A
R
E
H
S
KFLAEGAALRAAPDAVHTDGV
R
A
M
C
E
R
L
A
T
SP
H
K
L
G
M
V
V
IAGM
T
D
A
S
A
L
L
A
E
A
G
D
L
V
R
E
K
VA
S
I
T
I
MGGIDPARDADG
L
V
Q
P
D
TRAYNNATD
I
H
A
A
R
A
L
Y
R
R
A
Q
Q
L
GI
P
L
R
I
L
T
KEAAYKAAVP
P
A
F
Y
E
G
I
A
R
NGH
P
V
G
E
Y
L
R
D
V
Q
K
N
A
L
K
G
L
W
E
G
I
Q
A
NLIPGLD
T
A
W
F
F
R
T
FVAGALS
F
D
A
I
W
P
Q
VT
K
L
N
L
Y
D
P
L
T
L
L
A
A
L
P
-
G
T
-
A
R
L
L
F
Q
P
T
P
M
H
------------
R
E
G
---
A
S
P
V
E
H
V
G
H
-
A
E
-----
V
V
------
R
P
E
K
A
R
--
L
L
L
S
A
L
A
K
A
A
L
V-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
59.67
34%
5
- C6 -
1JDH
-
TF7L2_HUMAN
B:
[12-49]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
G
-
A
N
-
D
E
----
L
I
S
F
K
------------
D
E
G
---
E
Q
-
E
E
K
S
S
E
-
N
S
-----
S
A
--
E
R
D
L
A
D
V
K
S
S
--
L
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
58.15
17%
-61
- C7 -
4PWU
1
MZRA_KLEP7
A:
[3-78]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q
Q
Q
E
A
T
L
A
I
R
P
V
G
Q
G
-
I
G
M
P
D
G
F
S
V
W
H
H
L
D
------------
A
N
G
---
I
R
-
F
K
S
I
T
P
Q
K
D
-----
G
L
L
I
K
F
D
S
T
A
Q
G
A
A
--
A
K
E
V
L
G
R
A
LP
H
G
Y
I
I
A
L
L
E------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
58.15
24%
-63
- C8 -
3BFM
3
?
A:
[16-59]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
A
G
-
P
G
-
Q
D
P
F
D
L
A
C
Q
K
A
------------
E
L
G
VDA
G
L
-
V
V
Y
E
L
G
-
T
D
-----
V
L
R
A
A
L
V
L
A
P
E
V
P
L
--
A
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
57.95
24%
-89
- C8 -
1EU1
1
DSTOR_RHOSH
A:
[56-90]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
Y
P
M
V
R
R
E
F
L
E
KGVNADRST
R
G
N
---
G
D
-
F
V
R
V
T
W
-
D
E
-----
A
L
D
L
V
A
R
E
L
K
R
V
Q
E
--
S
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
48.77
24%
-8
* C8 *
1CE4
-
A:
[1-35]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
T
R
P
N
------------
N
N
T
---
R
K
-
S
I
H
I
G
P
-
G
R
-----
A
F
Y
T
T
G
E
I
I
G
D
I
R
Q
A
H
C
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
47.30
24%
-65
- C8 -
2VPZ
-
?
A:
[96-123]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
R
P
L
I
R
V
E
GSQ---------
R
G
E
---
G
K
-
Y
R
V
A
T
W
-
E
E
-----
A
L
D
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
45.26
40%
-114
- C8 -
1A79
-
ENDA_METJA
A:
[32-46]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
N
-
F
L
S
L
S
L
-
V
E
-----
A
L
Y
L
I
N
L
G
W
L
E
V
K
Y
--
K
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
44.61
15%
-81
- C8 -
3A35
-
?
A:
[106-132]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
T
-
V
D
N
I
T
E
E
E
D
-----
R
L
K
V
Y
I
K
I
P
K
D
L
I
E
--
N
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
43.31
12%
-73
- C8 -
2F3O
-
?
A:
[274-306]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
M
G
-
R
I
-
D
Q
Y
L
Y
P
F
F
K
K
D
------------
I
G
E
---
G
R
----
I
N
R
-
E
L
-----
A
F
D
I
L
A
N
L
W
I
K
T
N
E
--
I
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
41.86
40%
-103
- C8 -
1R0V
-
ENDA_ARCFU
A:
[176-190]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
D
-
L
V
T
L
S
L
-
I
E
-----
S
L
Y
L
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
40.94
55%
-37
- C3 -
2LCN
-
?
A:
[2-12]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
W
L
A
L
A
L
A
P
A
L
A
L
--
A
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
40.63
45%
-39
- C1 -
3IEY
-
?
B:
[21-31]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
K
I
S
E
-
P
E
-----
L
L
F
V
L
R
N
K
P
Q
I
K
D
R
--
L
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
35.17
27%
-61
- C8 -
3AJV
1
ENDA_AERPE
B:
[51-65]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
G
-
P
L
R
L
S
L
-
I
E
-----
S
L
Y
L
A
E
K
G
V
L
E
V
A
K
--
P
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
34.74
27%
-85
- C8 -
2ZYZ
-
ENDA_PYRAE
B:
[45-59]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
-
P
L
I
L
G
L
-
Y
E
-----
A
L
Y
L
A
E
K
G
R
L
K
V
M
G
--
E
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------