@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs0389: (2015-11-30 )
MKNRLTHYFRKMRTRGKGCLLSLSLFLSGLLTNTAYAEDPFAKTQNLAQQGITKVQGIGIVTFGFVAVATGLVYGFGGRELKAAIKKYWIAIALAIVAVSAGPSIVEWFFNFVKG
Atome Classification :
(16 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20.....-...30........40........50........60........70...-.....80.....--...90........100---.......--110...----
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MK
N
R
L
T
H
Y
F
R
K
M
R
TRGK
G
C
L
L
S
L
S
L
F
-
L
S
G
L
LTNTAYAEDP
F
A
K
T
Q
N
L
A
Q
QGITKVQ
G
I
G
I
V
T
F
G
F
V
A
V
A
T
G
L
V
Y-GFG
G
R
E
L
K
A
A
I
K
--
K
Y
W
I
A
I
A
L
A
I
V
AVSAG---
P
S
I
V
E
W
F
--
F
N
FVKG----
12
Fugue
78.98
27%
-80
- C4 -
1EHK
6
COX1_THET8
A:
[14-562]
AYP
E
K
K
A
T
L
Y
F
L
V
L
G
F
L
A
L
I
V
G
S
L
F
G
P
F
Q
A
L
N
Y
G
NVDA
Y
P
L
L
K
R
L
L
PFVQS
Y
Y
Q
G
L
T
L
H
G
V
L
N
AI
V
F
T
Q
L
F
A
Q
A
I
M
V
Y
L
P
A
R
E
L
NMRPN
M
G
L
M
W
L
S
W
W
M
A
F
I
G
L
V
V
A
A
L
P
L
L
A
NEATVLYTFYPPLKGH
W
A
F
Y
L
G
A
S
V
F
V
L
S
T
W
V
S
I
Y
I
V
L
D
L
W
R
R
W
K
A
A
N
PGKVTP
L
V
T
Y
M
A
V
V
F
W
L
M
W
F
L
A
S
L
G
L
V
L
E
A
V
L
F
L
L
P
W
S
F
GLVEGVD
P
L
V
A
R
T
L
F
W
W
T
G
H
P
I
V
Y
F
W
L
L
P
A
Y
A
I
I
Y
TI
L
P
K
Q
A
GGKLVS
D
P
M
A
R
L
A
F
L
L
F
L
L
LSTPVGFHHQFADPGID
P
T
W
K
M
I
H
S
V
L
T
L
F
V
A
V
P
S
L
M
T
A
F
T
V
A
A
S
L
E
F
A
G
R
L
R
GGRGLF
G
W
I
R
A
LPWDN
P
A
F
V
A
P
V
L
G
L
L
G
F
I
P
G
G
A
G
G
I
V
N
A
S
F
T
L
D
Y
V
V
HNTA
W
V
P
G
H
F
H
L
Q
VAS
L
V
T
L
T
A
M
G
S
L
YW
L
L
P
N
L
TG
K
P
I
S
D
A
Q
R
R
L
G
L
A
V
V
W
L
W
F
L
G
M
M
I
M
A
V
G
L
H
W
A
G
L
L
NVPRRAYIAQVPD
A
Y
P
H
A
A
V
P
M
V
F
N
V
L
A
G
I
V
L
L
V
A
L
L
L
F
-
I
Y
G
L
F
S
V
L
L
---------
S
R
L
A
E
A
P
L
P
F
A
E
V
I
S
----------------
G
P
E
D
R
R
L
V
L
A
M
D
R
I
G
F
W
F
A
V
A
A
I
L
V
V
L
A
Y
G
---
P
T
L
V
Q
L
F
G
H
L
N
P
V
P
G
W
R
LW
17
Fugue
62.15
6%
-101
* C3 *
2E29
-
A:
[1-92]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
S
G
S
S
G
F
E
P
R
S
L
I
T
S
D
K
G
F
V
T
M
T
L
E
-
S
L
E
E
I
Q
D
V
S
C
A
W
K
E
L
N
R
K
--
L
S
S
N
A
V
S
Q
I
T
R
M
C
L
L
K
G
N
-----
M
G
V
C
F
-
D
V
P
T
T
E
S
E
R
L
Q
A
--
E
W
------------------
H
D
S
D
W
I
--
L
S
V
P
A
-----
19
Fugue
53.98
16%
-50
- C3 -
2JS3
-
?
A:
[1-96]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
S
S
H
H
H
H
H
H
S
S
G
R
E
N
--------
L
Y
-
F
Q
G
M
T
D
T
A
A
E
D
V
R
K
I
A
T
A
L
L
K
T
A
I
E
I
V
S
E
E
D
G
G
A
H
N
Q
C
K
L
C
G
A
S
V
P
-
W
-
L
Q
T
G
D
E
I
K
H
A
D
D
-----
C
P
V
V
I
A
K
Q
I
L
S
S
R
---
P
K
L
H
A
V
-------------
20
Fugue
53.43
17%
-37
- C2 -
2OD5
7
?
A:
[7-97]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ET
E
S
M
K
T
V
R
I
R
E
K
I
K
K
F
L
G
D
R
P
R
N
T
A
E
I
L
E
H
I
N
S
T
M
R
H
G
--
T
T
S
Q
Q
L
G
N
V
L
S
K
D
K
D
I
V
K
V
G
Y
I
K
R
S
G
I
L
-----------------
S
G
G
Y
D
I
C
E
W
A
T
--
R
N
W
V
A
E
H
C
-----------
P
E
W
T
E
--------------
18
Fugue
47.20
18%
-58
* C4 *
2XA6
-
KHDR1_HUMAN
A:
[99-135]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
E
N
K
Y
-
L
P
E
L
M
A
E
K
D
S
L
D
P
S
F
T
H
A
M
Q
L
L
T
A
E
I
E
K
I
Q
K
G
---------------------------------------------------------------------
11
Fugue
42.83
8%
-64
* C2 *
2RNN
-
SIZ1_YEAST
A:
[-3-111]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
N
L
E
D
Y
W
E
D
E
T
P
G
P
D
R
E
P
-
T
N
E
L
R
N
E
V
E
E
T
I
T
L
M
E
L
L
K
V
S
E
L
K
D
I
C
R
S
V
S
F
P
V
S
G
R
K
A
V
L
Q
D
L
I
R
N
F
-
L
Q
N
A
L
V
V
G
K
S
D
P
--
Y
R
V
Q
A
V
K
F
L
I
E
R
I
R
K
N
E
P
L
P
V
Y
K
D
L
W
--
N
A
L
R
K
G
----
13
Fugue
42.73
11%
-45
- C4 -
3HZQ
-
MSCL_STAAW
A:
[1-94]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
K
E
F
K
E
F
A
L
K
G
N
----------
V
L
D
L
A
I
A
V
V
M
G
A
A
F
N
K
I
I
C
S
L
V
E
N
I
I
M
P
L
I
G
K
I
F
G
S
V
D
F
A
K
E
W
S
F
W
G
I
-
K
Y
G
--
L
F
I
Q
S
V
I
--
D
F
I
I
I
A
F
A
L
F
I
F
V
K
I
A
---
N
T
L
M
K
--------
K
E
----
8
HHSearch
36.83
14%
-41
- C4 -
1RH5
-
SECE_METJA
B:
[27-61]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
P
T
K
D
E
Y
L
--
A
V
A
K
V
T
A
L
G
I
S
L
L
G
I
I
---
G
Y
I
I
H
V
P
--
A
T
Y
I
K
G
----
10
HHSearch
34.11
29%
-61
- C4 -
3WU2
-
PSBE_THEVL
E:
[24-52]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
I
P
A
L
F
I
A
G
W
L
F
V
S
T
G
L
A
Y
D
V
F
G
T
P
R
P
D
S
Y
Y
A
--
Q
E
Q
R
S
I
P
L
V
T
D
R
F
E
A
K
---
Q
Q
V
E
T
F
L
--
E
Q
L
K
------
1
HHSearch
28.19
13%
-23
- C4 -
3J2W
-
POLS_CHIK3
E:
[2-41]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
T
L
G
V
Q
D
I
S
T
T
A
M
S
W
V
Q
K
I
T
G
G
V
G
L
I
V
A
V
A
A
L
I
L
I
V
V
L
-
C
V
S
F
S
R
H
---------------------------------------------
6
HHSearch
24.82
19%
58
- C4 -
2C5K
2
TLG1_YEAST
T:
[5-23]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
D
P
F
Q
Q
V
V
K
D
T
K
E
Q
L
N
R
I
N
N
Y
I
T
R
H
N
T
A
D
D
Q
E
E
E
I
Q
D
-
I
L
K
D
V
E
E
T
I
V
D
L
--
D
R
S
I
I
V
M
K
R
D
E
N
E
D
V
S
---
G
R
E
A
Q
V
K
--
N
I
K
Q
Q
L
----
5
HHSearch
23.46
33%
35
- C4 -
2JTT
-
CYBP_MOUSE
C:
[199-216]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
Y
-
E
D
G
D
D
D
M
K
R
T
I
N
--
K
A
W
V
----------------------------------
4
HHSearch
22.66
18%
38
- C4 -
2RDD
-
YAJC_ECOLI
B:
[9-30]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
V
F
G
L
I
F
Y
-
F
M
I
L
R
P
Q
Q
K
R
T
K
--
E
H
K
K
L
M
D
S
------------------------------
3
HHSearch
18.99
9%
24
- C4 -
2IFO
-
CAPSD_BPXF
A:
[11-44]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
S
A
I
Q
G
A
A
G
P
I
A
A
I
G
G
A
V
L
T
V
M
V
G
I
K
V
Y
K
W
-
V
R
R
A
M
-----------------------------------------------
2
HHSearch
17.04
22%
38
- C4 -
1IFP
-
CAPSD_BPPF3
A:
[17-39]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
D
I
T
T
I
G
G
A
I
I
V
L
A
A
V
V
L
G
I
R
W
-
I
K
A
Q
F
F
----------------------------------------------
9
HHSearch
5.14
36%
62
- C1 -
1BH9
-
A:
[7-17]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
C
M
M
Y
-
G
F
G
D
D
Q
N
P
Y
T
E
S
--
V
D
I
L
E
D
L
V
I
E
F
I
T
E
M
T
---
H
K
A
M
S
I
-------------