@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs0395: (2015-11-30 )
MSKSQTDYFSDDLMADALQAENYLRQSYTCPLQTIQRGIEQGLQSYLERYRLASPQLKFQIFLFSNFYGEKMKYLLEEGEGEFHV
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20....-...----.30...----...-..40........50.......---------.60.-.......70........----80....------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSKSQTDYF
S
D
D
L
M
A
D
A
L
Q
A
E
N
Y
L
R
-
Q
SY----TC
P
L
Q
T
----
I
Q
R
-
G
I
E
Q
G
L
Q
S
Y
L
E
R
YRLASP
Q
L
K
---------
F
Q
I
F
-
L
FSNFY
G
E
K
M
K
Y
L
L
E
EG----EGEFHV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
81.20
38%
-50
- C3 -
4TOE
1
?
A:
[113-154]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
Y
V
S
R
D
L
L
K
D
I
L
E
S
E
E
E
H
I
-
D
Y
L
----
E
T
Q
L
G
L
----
I
Q
K
V
G
L
E
N
Y
L
Q
S
H
M
H
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
80.51
38%
-45
- C3 -
3IS7
1
?
A:
[113-154]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
Y
V
S
R
D
L
L
K
D
I
L
E
S
E
E
E
H
I
-
D
Y
L
----
E
T
Q
L
G
L
----
I
Q
K
V
G
L
E
N
Y
L
Q
S
H
M
H
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
79.17
38%
-50
- C3 -
4E6K
2
?
A:
[113-154]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
Y
V
S
R
D
L
L
K
D
I
L
E
S
E
E
E
H
I
-
D
Y
L
----
E
T
Q
L
G
L
----
I
Q
K
V
G
L
E
N
Y
L
Q
S
H
M
H
E
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
78.82
38%
-45
- C3 -
4TOD
1
?
A:
[113-154]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
Y
V
S
R
D
L
L
K
D
I
L
E
S
E
E
E
H
I
-
D
Y
L
----
E
T
Q
L
G
L
----
I
Q
K
V
G
L
E
N
Y
L
Q
S
H
M
H
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
78.37
38%
-50
- C3 -
4TOG
3
?
A:
[113-154]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
Y
V
S
R
D
L
L
K
D
I
L
E
S
E
E
E
H
I
-
D
Y
L
----
E
T
Q
L
G
L
----
I
Q
K
V
G
L
E
N
Y
L
Q
S
H
M
H
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
78.08
38%
-50
- C3 -
4TOH
5
?
A:
[113-154]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
Y
V
S
R
D
L
L
K
D
I
L
E
S
E
E
E
H
I
-
D
Y
L
----
E
T
Q
L
G
L
----
I
Q
K
V
G
L
E
N
Y
L
Q
S
H
M
H
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
77.95
17%
-31
- C2 -
3R66
-
NS1_INBLE
A:
[7-102]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
T
Q
I
E
V
G
P
G
A
T
N
A
T
I
N
F
E
A
G
I
L
E
C
Y
E
R
-
F
S
W
Q
RAL
D
Y
P
G
Q
D
----
R
L
H
-
R
L
K
R
K
L
E
S
R
I
K
T
H
N
K
S
E
P
E
N
K
---------
R
M
S
L
-
E
E
R
K
A
I
G
V
K
M
M
K
V
L
L
F
M
----
D
P
S
A
G
I
EGFEP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
77.61
38%
-47
- C3 -
3ISF
1
?
A:
[113-154]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
Y
V
S
R
D
L
L
K
D
I
L
E
S
E
E
E
H
I
-
D
Y
L
----
E
T
Q
L
G
L
----
I
Q
K
V
G
L
E
N
Y
L
Q
S
H
M
H
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
77.53
38%
-49
- C3 -
4TOF
3
?
A:
[113-154]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
Y
V
S
R
D
L
L
K
D
I
L
E
S
E
E
E
H
I
-
D
Y
L
----
E
T
Q
L
G
L
----
I
Q
K
V
G
L
E
N
Y
L
Q
S
H
M
H
E
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
76.96
38%
-48
- C3 -
3IS8
1
?
A:
[113-154]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
Y
V
S
R
D
L
L
K
D
I
L
E
S
E
E
E
H
I
-
D
Y
L
----
E
T
Q
L
G
L
----
I
Q
K
V
G
L
E
N
Y
L
Q
S
H
M
H
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
76.91
38%
-44
- C3 -
3ISE
-
?
A:
[113-154]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
Y
V
S
R
D
L
L
K
D
I
L
E
S
E
E
E
H
I
-
D
Y
L
----
E
T
Q
L
G
L
----
I
Q
K
V
G
L
E
N
Y
L
Q
S
H
M
H
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
71.44
17%
-40
- C2 -
1RKI
2
?
A:
[1-101]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
K
K
H
I
I
I
K
T
I
P
K
K
E
E
I
I
S
R
D
L
C
D
C
I
Y
Y
Y
D
N
S
V
I
-
C
K
P
----
I
G
P
S
K
V
----
Y
V
S
-
T
S
L
E
N
L
E
K
C
L
Q
L
H
Y
F
K
K
L
V
K
N
---------
I
E
I
F
D
E
V
H
N
S
K
P
N
C
D
K
C
L
I
V
E
I
----
G
G
V
Y
F
V
R
R
V
N
GVP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
66.49
15%
-25
- C2 -
4U6N
1
DIAA_ECOLI
A:
[8-200]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------N
V
Q
E
R
I
K
A
C
F
T
E
S
I
Q
T
Q
I
A
A
A
E
A
L
P
D
A
I
S
R
A
A
M
T
L
V
Q
S
L
L
N
G
N
K
I
L
C
C
G
N
G
T
S
A
A
N
A
Q
H
F
A
A
S
M
I
NRFETER
P
S
L
P
A
I
A
LNTD
N
V
V
L
T
A
I
A
N
D
R
L
H
D
E
V
Y
A
K
Q
V
R
A
L
G
H
A
G
D
V
L
L
----
A
I
S
T
R
G
----
N
S
R
-
D
I
V
K
A
V
E
A
A
V
T
R
--------
D
---------
M
T
I
V
-
A
L
T
G
Y
D
G
G
E
L
A
G
L
L
G
P
Q
----
D
V
E
I
R
I
PSHR
S
A
R
I
Q
E
M
H
M
L
T
V
N
C
L
C
D
L
I
D
N
T
LFP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
66.41
16%
-58
- C3 -
4WBD
3
BSHC_BACSU
A:
[2-541]
H
M
Q
L
T
E
L
S
I
K
N
QN
V
F
V
Q
H
Y
I
D
GKEEMSSFFDYSIHHKD
M
W
R
E
R
L
E
D
L
S
S
RFFA
R
E
E
L
A
A
Y
L
T
S
Y
H
NKFGS
S
A
M
Q
S
A
I
E
K
L
K
DPS
S
A
A
V
V
G
GQQAGLLTGP
L
Y
T
I
H
K
I
I
S
I
I
V
L
A
K
Q
Q
E
K
E
L
Q
V
P
V
I
P
I
F
W
V
AGEDHDLDEIN
F
V
H
T
S
E
EN
G
P
V
K
K
K
LPQSYWKKSSAASTSLD
Q
E
K
C
A
A
W
I
D
D
V
F
A
A
FEETDH
T
N
T
L
L
D
N
V
K
R
C
L
R
E
SVT
F
T
D
F
F
E
L
L
I
A
D
L
FQEEG
L
V
L
L
N
SGDPGIKKLE
T
A
M
F
Q
K
I
L
R
E
N
D
E
L
A
R
A
V
S
D
Q
Q
A
F
M
R
Q
A
G
Y
K
P
I
IESGKEQAN
L
F
Y
E
Y
ED
E
R
F
L
I
E
K
D
NGRFVIKELD
L
G
W
T
R
D
E
L
H
T
H
M
E
E
HPER
F
S
N
N
VVT
R
P
L
M
Q
E
F
L
I
PTL
A
F
I
A
G
P
G
E
I
N
Y
W
G
E
L
K
Q
A
F
A
V
M
GFKM
P
P
V
M
P
R
L
N
I
T
I
L
E
R
H
I
E
K
K
L
A
E
R
NIS
L
Q
D
A
I
E
RGT
E
N
Q
R
E
T
Y
F
E
R
Q
IP
E
E
F
T
A
V
M
D
Q
A
K
S
Q
I
E
A
I
H
K
T
V
R
Q
E
A
L
K
V
D
Q
S
L
E
P
L
L
L
K
N
A
A
F
I
Q
-
D
Q
L
----
Q
F
L
E
R
T
----
V
M
K
-
R
I
E
E
K
E
G
Y
V
L
K
D
Y
E
R
I
Q
N
S
I
K
PLLAPQERI
W
N
I
M
-
Y
Y
L
N
R
Y
G
P
K
F
F
T
T
F
K
N
L
PFSF
Q
N
Q
H
Q
V
V
K
L---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
66.07
17%
-40
* C2 *
3OWV
3
NUCE_STRPN
A:
[20-248]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SEAPS
Q
A
L
A
E
S
VLT
D
A
V
K
S
Q
IK
G
S
L
E
W
NGSG
A
F
I
V
NGNKTNLDAKVSS
K
P
Y
A
D
N
K
T
K
T
V
GK
E
T
V
P
T
V
A
N
A
L
L
S
KATRQYSWTPPG
W
H
Q
V
K
NLKGSYTHAVDRGALLGYALIGGLDGFDASTSNPKNIAVQTAWANQAQ
A
E
Y
S
T
G
Q
N
Y
Y
E
S
K
V
R
K
A
L
D
Q
N
K
R
V
R
-
Y
R
V
----
T
L
Y
Y
A
S
NEDL
V
P
S
-
A
S
Q
I
E
A
K
S
-------
S
D
G
E
L
E
---------
F
N
V
L
-
V
P
N
V
Q
K
G
L
Q
L
D
Y
----
R
----
T
G
E
V
T
V
TQ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
60.57
19%
12
- C3 -
4Y9J
4
?
A:
[1-592]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TITARHTQYSHAKTGG
F
S
Q
T
G
P
TL
H
N
P
Y
K
D
D
P
I
L
D
R
T
L
R
R
L
L
P
E
S
E
Y
M
R
-
V
A
A
------
D
L
S
K
----
F
G
D
-
R
I
T
S
E
V
E
H
L
G
R
Q
A
E
L
E
Q
P
R
L
E
---------
H
Q
------
D
A
W
G
K
R
V
D
K
L
I
V
C
------
N
E
W
H
K
L
K
Q
I
C
A
E
E
GV
I
S
I
G
Y
EDSVD
P
F
V
R
R
I
H
Q
V
A
K
L
F
L
F
SPSAGLV
S
C
P
M
A
M
T
D
G
A
V
K
T
L
T
S
L
NLYGKH
K
L
A
T
E
A
V
D
R
L
R
SRDPS
K
A
W
T
S
G
Q
W
MTEKKGGSDVAGGCD
T
Y
A
V
Q
IDKD
T
Y
R
L
H
G
Y
K
WFSSAVDAD
V
A
L
T
L
A
R
I
V
D
SDG
N
A
L
E
G
SRG
L
S
L
F
L
L
K
IRDESGNLNGIQMVRLKNKLGTKQ
L
P
T
A
E
L
L
L
D
G
A
I
A
E
R
I
G
DQGR
G
V
A
G
I
SNM
L
N
I
T
R
I
H
N
A
V
A
S
L
G
Y
M
R
R
I
I
S
L
A
R
D
Y
S
T
K
RVVFGQTQSKW
P
L
H
T
T
T
L
A
K
M
E
V
D
T
R
G
S
M
L
L
L
F
E
A
A
R
L
L
G
L
S
E
A
GKSS
D
V
E
A
M
M
L
R
L
I
T
P
V
L
K
L
Y
A
G
K
Q
A
V
P
M
V
S
E
G
I
E
C
F
GGQGYMEDTG
L
P
T
L
L
R
D
A
Q
V
T
P
I
WEGT
T
N
V
L
S
L
D
V
L
R
V
F
SGKE
N
I
L
L
A
F
G
K
R
V
E
Q
L
L
G
NTKTED
E
K
L
K
K
S
K
E
A
V
E
S
A
L
K
Q
L
Q
K
L
L
V
K
A
S
DSAIQGETRIDSV
A
R
H
I
A
F
T
I
A
R
I
Y
S
G
A
L
L
I
D
H
A
S
DSSVAN
Q
S
D
I
E
V
A
Y
R
Y
C
CEQPLIDLRWEWFA
S
E
R
V
K
A
D
R
E
I
V
F
DNFT
1
PsiBlast_PDB
53.58
33%
-47
- C3 -
3GM5
3
?
A:
[12-47]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
N
I
L
D
-
M
R
N
----
T
V
Q
I
G
I
----
V
V
R
-
D
I
E
E
S
L
Q
N
Y
A
E
F
F
G
V
E
K
P
Q
W
F
---------
W
T
D
D
-
Y
S
K
A
H
T
K
F
N
G
R
P
T
K
A
R
A
----
K
L
A
F
F
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
45.17
14%
-43
- C3 -
2C8E
-
ARC3_CBDP
E:
[14-55]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
A
K
A
W
G
N
A
Q
Y
K
K
Y
-
G
L
S
K
S
E
K
---------
E
A
I
V
-
S
Y
T
K
S
-
A
S
E
I
N
G
K
L
R
Q
N
----
K
G
V
I
N
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
41.88
14%
-38
* C3 *
1R45
4
ARC3_CBCP
A:
[15-56]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
K
W
G
N
A
Q
Y
K
K
Y
-
G
L
S
K
P
E
Q
---------
E
A
I
K
-
F
Y
T
R
D
-
A
S
K
I
N
G
P
L
R
A
N
----
Q
G
N
E
N
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
41.02
14%
-40
- C3 -
2BOV
-
ARC3_CBDP
B:
[54-96]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
A
K
A
W
G
N
A
Q
Y
K
K
Y
-
G
L
S
K
S
E
K
---------
E
A
I
V
-
S
Y
T
K
S
-
A
S
E
I
N
G
K
L
R
Q
N
----
K
G
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------