@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs0397: (2015-11-30 )
MKMKKWFGLLFLGLALITLAACGQKTPEDIIKTELKDSYVGYSENPGSDYPFNDGDDVLTFNKKENSITNSQGQMTYFSVIPKEEVPAGTQRVIDELETKLKGTNNFTIIINSTVKNPTKKDSEGAYQIALSDSGKAIRIFELGREPRSFGYYDFSGKAK
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------.......---..10.--------...-------....20.....----...30.....------...40........50..-.---.--------....-60....-...-.70-........80.....--....90.--.....-..100.---.-.-....110.......120....-....130.----------........140.......150.......160------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------M
K
M
K
K
W
F
---
G
L
L
F
L
--------
G
L
A
-------
L
I
T
L
A
ACGQK
T
----
P
E
D
I
I
K
T
E
L
K
------
D
SYVGYSENPGSDYPFN-D---G--------D
D
V
L
-
T
FNKKE-NSI-TNS-QG
Q
M
T
Y
F
S
V-I
P
K
E
E--VPA
G
T
Q
R
--
V
I
D
E
L
-
E
T
K
LKG---T-N-
N
F
T
I
I
I
NSTVKNPTK-KDSEG-
A
Y
Q
I
A
--L----------SDSG
K
A
I
R
I
F
ELGREPRSFGYYDFSGKAK--------------------------------------------------
61
Fugue
67.11
18%
-59
- C6 -
2EBG
-
?
A:
[1-106]
------------------------------------------------------------------------------------------------------------------------------------------------
M
Q
A
V
R
L
F
Q--
G
Y
L
W
H
--------
P
R
A
-------
L
-------
A
L
D
----
L
K
A
L
L
P
G
E
V
A
------
G
A
R
L
L
W
D
E
V
P
P
P
T
P
F
F
E
-
D
---
G
--------
T
P
T
H
-
T
--------
Q
-
R
F
Y
-
Q
L
T
L
L
V
L
T
E
-
E
P
P
E
A
--
L
K
P
L
A
E
E
--
A
A
E
A
L
-
G
E
V
L
E
G
---
L
P
P
-
E
V
G
W
L
L
L
E
D
L
R
P
L
----------------------------------------------------------------------------------------------------------
55
Fugue
64.61
14%
-53
- C6 -
1A9X
-
CARB_ECOLI
A:
[936-1073]
-----------------------------------------------------------------------------------------------------------------------------------------------------
N
S
---
T
M
K
K
H
--------
G
R
A
-------
L
L
S
V
R
E
G
D
K
E
R
----
V
V
D
L
A
A
K
L
L
K
------
Q
G
F
-----------------------------
E
L
D
-
A
T
H
G
T
A
-
I
V
L
-
G
E
A
-
G
I
N
P
R
L
V
N
------
K
--
V
H
E
G
R
P
H
--
I
Q
D
R
I
-
K
N
---------
G
-
E
Y
T
Y
I
I
N
T
T
S
G
R
R
A
I
-
E
D
S
R
V
-
I
R
R
S
A
--
L
Q
Y
KVHYDTT
L
N
G
G
F
A
T
A
M
A
L
N
A
D
A
T
E
K
V
I
S
V
Q
E
M
H
A
Q
I
K
--------------------------------------------------
11
PsiBlast_PDB
63.29
26%
17
- C7 -
3FZ3
1
?
A:
[463-523]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
-
Q
---
G
--------
F
E
Y
F
-
A
F
K
T
E
E
-
N
A
F
-
I
N
T
L
A
G
R
T
S
F
L
R
A
-
L
P
-
D
E
--
V
L
A
N
A
Y
Q
--
I
S
R
E
Q
-
A
R
Q
L
K
Y
---
N
-
R
-
Q
E
T
I
A
L
S
S
---------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
62.41
26%
23
- C7 -
3EHK
-
?
A:
[463-523]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
-
Q
---
G
--------
F
E
Y
F
-
A
F
K
T
E
E
-
N
A
F
-
I
N
T
L
A
G
R
T
S
F
L
R
A
-
L
P
-
D
E
--
V
L
A
N
A
Y
Q
--
I
S
R
E
Q
-
A
R
Q
L
K
Y
---
N
-
R
-
Q
E
T
I
A
L
S
S
---------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
58.79
25%
-103
- C7 -
1Q57
-
PRIM_BPT7
A:
[423-485]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
D
H
I
S
I
-
V
V
S
A
S
--
G
E
S
D
E
R
K
--
M
I
D
N
L
-
M
T
K
L
K
G
F
A
K
S
-
T
-
G
V
V
L
V
V
I
C
H
L
K
N
P
D
K
G
K
A
H
E
E
-
G
R
P
V
S
--
I
----------
T
D
-----------------------------------------------------------------------------
64
Fugue
58.20
21%
17
- C2 -
4P6V
2
NQRB_VIBCH
B:
[38-409]
GLVTKRSSHV
R
D
S
V
D
L
K
R
I
M
I
M
V
W
L
A
V
F
P
A
M
F
W
G
M
Y
N
A
G
G
Q
A
I
A
A
L
N
H
L
YSG
D
Q
L
A
A
I
V
A
G
N
W
H
Y
W
L
T
E
M
L
GGTMG
S
K
M
L
L
G
A
T
Y
F
L
P
I
Y
A
T
V
F
I
V
G
G
F
W
E
V
L
F
C
M
V
R
K
H
E
V
N
E
G
F
F
V
T
S
I
L
F
A
L
I
V
PPTLP
L
W
Q
A
A
L
G
I
T
F
G
V
V
V
A
K
E
V
F
GGT
G
R
N
F
L
--------
N
P
A
-------
L
A
G
R
A
F
L
F
F
A
Y
----
P
A
Q
I
S
G
D
L
V
W
------
T
A
A
D
G
Y
S
G
A
T
A
L
S
Q
W
A
Q
-
G
---
G
--------
A
G
A
L
-
I
N
I
P
G
S
-
I
G
E
-
V
S
T
-
L
A
L
M
I
G
A
A
F
-
I
V
Y
M
G
--
I
A
-------------
S
W
R
I
I
G
---
G
-
V
-
M
I
G
M
I
L
L
S
T
L
F
N
V
I
G
-
S
D
T
N
A
-
M
F
N
M
P
WH
L
----------
V
L
G
G
F
A
F
G
M
F
F
M
A
T
D
P
V
S
A
S
F
T
N
-
S
G
K
W
A
Y
G
I
L
I
G
V
M
C
V
L
I
R
VVNPAYPEG
M
M
L
A
I
L
F
A
N
L
F
A
P
L
F
D
H
V
V
V
E
R
N
IKRRL
58
Fugue
58.19
16%
-8
- C6 -
4TVS
-
TOIP1_HUMAN
A:
[8-231]
--------------------------------------------------------------------------------------------------------------------VET
T
A
V
Q
E
F
Q
N
Q
M
N
Q
L
K
N
K
Y
QGQD
E
K
L
W
K
R
S
Q
T
F
L
---
E
K
H
L
N
SSHPRSQ
P
A
I
L
-------
L
L
T
A
A
R
D
A
E
E
A
L
R
C
L
S
E
Q
I
A
D
A
Y
S
S
------
F
R
S
V
R
A
I
R
I
D
G
T
D
K
A
T
Q
-
D
---
S
--------
D
T
V
K
-
L
E
V
D
Q
E
-
L
S
N
-
G
F
K
-
N
G
Q
-
N
A
A
V
V
-
H
R
F
E
S
--
F
P
A
G
S
T
L
--
I
F
Y
K
Y
C
D
H
E
N
A
A
---
F
-
K
-
D
V
A
L
V
L
T
V
L
L
E
E
E
T
L
-
G
T
S
L
G
-
L
K
E
V
E
--
E
----------
K
V
R
D
F
L
K
V
K
F
T
N
S
N
T
P
N
S
Y
N
H
M
D
P
D
K
L
N
G
L
W
S
R
I
SH
L
V
L
P
V
Q
P
E
NALKRGICL--------------------------
20
PsiBlast_PDB
56.11
31%
-2
- C5 -
4LLF
1
CAPSD_CNV
A:
[242-325]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
G
------
D
I
F
V
E
Y
T
V
D
L
F
E
A
Q
P
T
S
-
P
---
L
--------
L
E
S
L
--
F
R
E
S
A
-
S
S
V
-
Q
T
R
-
M
G
-
L
P
Y
F
S
L
-----
E
--
V
A
S
A
T
D
L
--
V
---
W
-
Q
A
R
V
P
G
---
T
-
Y
-
V
V
T
I
I
F
N
S
T
V
G
G
L
T
P
-
S
I
S
G
G
-
G
------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
53.03
25%
-63
- C7 -
1E0J
2
PRIM_BPT7
A:
[163-225]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
D
H
I
S
I
-
V
V
S
A
S
--
G
E
S
D
E
R
K
--
M
I
D
N
L
-
M
T
K
L
K
G
F
A
K
S
-
T
-
G
V
V
L
V
V
I
C
H
L
K
N
P
D
K
G
K
A
H
E
E
-
G
R
P
V
S
--
I
----------
T
D
L
R
G
S
G
A
L
R
Q
L
S
D
T
I
I
A
L
E
R
N
Q
Q
G
D
M
P
N
--------------------------------------------------
4
PsiBlast_PDB
52.34
25%
-59
- C7 -
1E0K
-
PRIM_BPT7
A:
[423-485]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
D
H
I
S
I
-
V
V
S
A
S
--
G
E
S
D
E
R
K
--
M
I
D
N
L
-
M
T
K
L
K
G
F
A
K
S
-
T
-
G
V
V
L
V
V
I
C
H
L
K
N
P
D
K
G
K
A
H
E
E
-
G
R
P
V
S
--
I
----------
T
D
-----------------------------------------------------------------------------
1
PsiBlast_PDB
49.08
35%
-13
* C9 *
2JSY
-
TPX_BACSU
A:
[29-82]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
-
T
N
S
L
E
E
-
K
S
L
-
A
D
M
-
K
G
K
V
T
I
I
S
V
-
I
P
S
I
D
TG
V
C
D
A
Q
T
R
--
R
F
N
E
E
-
A
A
K
L
G
D
---
V
-
N
-
V
Y
T
I
S
A
D
L
P
F
A
Q
A
R
W
-
C
G
A
N
G
-
I
D
K
V
E
--
T
----------
L
S
D
H
R
D
M
S
F
G
E
A
F
G
V
Y
I
K
E
L
R
L
L
A
R
S
V
F
V
--------------------------------------------------
17
PsiBlast_PDB
48.93
26%
31
- C8 -
3LI8
-
?
A:
[211-274]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
E
K
S
----
L
S
D
F
D
V
E
E
I
K
------
N
A
A
S
D
I
R
E
G
I
G
G
H
V
E
I
K
-
D
PIT
G
--------
K
T
V
I
-
M
F
Y
E
P
V
-
K
T
-------
G
D
F
S
F
V
L
V
-
V
P
K
E
E
--
M
L
A
------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
48.25
26%
40
- C8 -
3LI9
-
?
A:
[211-273]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
E
K
S
----
L
S
D
F
D
V
E
E
I
K
------
N
A
A
S
D
I
R
E
G
I
G
G
H
V
E
I
K
-
D
PIT
G
--------
K
T
V
I
-
M
F
Y
E
P
V
-
K
T
-------
G
D
F
S
F
V
L
V
-
V
P
K
E
E
--
M
L
-------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
48.19
32%
-56
- C8 -
1UCK
1
RNSA_STRAU
A:
[23-71]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
S
D
G
P
F
P
-
Y
---
S
--------
Q
D
G
V
-
V
F
Q
N
R
E
-
S
T
L
P
T
Q
S
-
Y
G
Y
Y
H
E
Y
T
V
-
I
T
P
G
A
--
R
T
R
G
T
R
R
--
I
I
T
G
E
-
A
T
Q
E
D
Y
---
Y
-
T
-
G
D
H
Y
A
T
F
S
L
I
D
Q
T
C
---------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
48.07
35%
-27
- C9 -
2JSZ
-
TPX_BACSU
A:
[29-82]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
-
T
N
S
L
E
E
-
K
S
L
-
A
D
M
-
K
G
K
V
T
I
I
S
V
-
I
P
S
I
D
T
G
V
C
D
A
Q
T
R
--
R
F
N
E
E
-
A
A
K
L
G
D
---
V
-
N
-
V
Y
T
I
S
A
D
L
P
F
A
Q
A
R
W
-
C
G
A
N
G
-
I
D
K
V
E
--
T
----------
L
S
D
H
R
D
M
S
F
G
E
A
F
G
V
Y
I
K
E
L
R
L
L
A
R
S
V
F
V
--------------------------------------------------
15
PsiBlast_PDB
47.89
34%
-66
- C4 -
2Z1P
-
?
A:
[71-131]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
G
D
T
I
T
L
T
L
P
------
D
A
L
V
G
M
T
E
N
D
S
S
P
R
K
I
N
L
N
---
G
L
G
E
V
F
I
Y
K
D
H
V
V
A
T
F
N
E
K
V
-
E
S
---
N
V
-
N
G
H
F
S
F
G
I
K
-
T
L
I
T
N
--
S
S
P
N
V
I
E
--
T
D
F
G
T
-
A
T
A
T
Q
R
---
L
-
T
-
I
E
G
V
R
D
Y
P
F
F
Y
K
V
G
D
-
L
A
G
E
S
-
N
Q
V
R
W
--
F
----------
L
N
V
N
L
N
K
S
D
V
T
E
D
I
S
I
A
D
R
Q
G
S
G
Q
Q
L
N
K
E
--------------------------------------------------
16
PsiBlast_PDB
47.68
26%
31
* C8 *
3LIA
-
?
A:
[211-273]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
E
K
S
----
L
S
D
F
D
V
E
E
I
K
------
N
A
A
S
D
I
R
E
G
I
G
G
H
V
E
I
K
-
D
PIT
G
--------
K
T
V
I
-
M
F
Y
E
P
V
-
K
T
-------
G
D
F
S
F
V
L
V
-
V
P
K
E
E
--
M
L
-------------------------------------------------------------------------------------------------------------------------------------------------
63
Fugue
47.34
12%
-53
* C6 *
2JX5
-
?
A:
[1-69]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
V
I
V
R
-
L
Q
D
Q
T
--
L
P
F
E
L
P
A
GA
R
A
S
Q
L
-
S
N
L
L
S
S
---
S
-
G
M
A
F
S
L
H
T
Q
G
R
V
L
S
E
A
A
-
E
L
N
D
K
-
M
V
I
D
A
--
F
----------
V
P
A
D
G
A
G
L
E
----------------------------------------------------------------------
56
Fugue
44.60
9%
-11
- C3 -
1C3G
-
SIS1_YEAST
A:
[180-349]
------------------------------------------------------------------------------------------------------------------------------------------------
E
T
V
Q
V
N
L
---
P
V
S
L
E
--------
D
L
F
V
G
K
K
K
S
F
K
I
G
R
K
G
P
H
G
A
S
----
E
K
T
Q
I
D
I
Q
L
K
PGWKAG
T
K
I
T
Y
K
N
Q
G
D
Y
N
P
Q
T
G
R
-
R
---
K
--------
T
L
Q
F
-
V
I
Q
E
K
S
-
H
P
N
-
F
K
R
-
D
G
D
D
L
I
Y
T
L
P
L
S
F
K
E
--
S
L
L
G
F
S
K
--
T
I
Q
T
I
-
D
G
R
----------
T
L
P
L
S
R
V
Q
P
V
Q
P
S
Q
T
-
S
T
Y
P
G
Q
G
M
P
T
P
--
K
----------
N
P
S
Q
R
G
N
L
I
V
K
Y
K
V
D
Y
P
I
S
L
N
D
A
Q
K
R
A
I
D
--------------------------------------------------
62
Fugue
44.12
17%
73
- C6 -
3UI3
-
SPG2_STRSG (first)
A:
[3-153]
------------------------------------------------------------------------------------------------------------------------------------------------
Y
K
L
I
L
-----------------------------------
G
E
T
T
----
T
E
A
V
D
A
A
T
A
E
------
K
V
F
K
Q
Y
A
N
D
N
D
G
E
W
T
Y
D
-
D
---
A
--------
T
K
T
F
-
T
V
T
E
G
S
M
Y
A
L
-
A
F
D
-
L
K
-----
I
E
-
I
L
K
K
E
--
Y
G
E
P
Y
N
K
--
A
Y
D
D
L
-
R
Q
E
L
E
L
-----
L
-
G
F
E
W
T
Q
G
S
V
Y
V
N
Y
S
K
-
E
N
T
L
A
-
Q
V
Y
K
A
--
I
----------
N
K
L
S
Q
I
E
W
F
K
K
S
V
R
D
I
R
A
F
K
V
E
D
F
S
D
F
T
E
I
V
K
SL---------------------------------------------