@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs0472: (2015-12-01 )
MIDIEVYSVLVSRIEYSDGTGSKVRPAVVVKFNDEVIKTLRLTTKYENKSDNIKSQYLEVIDWAKANLKRRSWIDTIQYYDLEDKGFNIKIIGRLSDRDIERLKDFLRAKEV
Atome Classification :
(20 SA)
----------------------------------------.........10........-20........30..--.-----.....40.......--.-50...-.....60........70-.-...--....-80------........90........100-....--...110-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------MI
D
I
E
V
Y
S
V
L
V
S
R
IEYSDG-TGSK
V
R
P
A
V
V
V
K
F
N
--
D
-----
E
V
I
K
T
L
R
L
T
T
KYEN--K-SD
N
I
K
-
S
Q
Y
L
E
V
I
D
W
A
K
ANLKRR-S-W
I
D
--
T
I
Q
Y
-
Y
D------LEDKG
F
N
I
K
I
I
G
RLSDR
D
I
E
R
-
L
K
D
F
--
L
RAKEV-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
69.31
12%
-107
- C4 -
1UB4
-
MAZF_ECOLI
A:
[4-108]
----------------------------------------
R
Y
V
P
D
M
G
D
L
I
W
V
D
F
D
P
-------
G
H
R
P
A
V
V
L
S
P
F
--
M
Y
N
N
K
T
G
M
C
L
C
V
P
C
T
T
Q
S
K
G
-----
Y
P
F
----
E
V
V
L
-----
S
G
Q
E
R
D
-
G
-
V
A
L
--
A
D
Q
V
-
K
S
------
I
A
W
R
A
R
G
A
T
K
K
G
T
V
A
P
E
E
L
Q
L
-
I
K
A
K
--
I
N
V
L
I
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
68.84
11%
-98
- C4 -
1M1F
-
PEMK_ECOLX
A:
[1-107]
-------------------------------------------
M
E
R
G
E
I
W
L
V
S
L
D
P
T
A
G
H
E
Q
Q
G
T
R
P
V
L
I
V
T
P
A
--
A
F
N
R
V
T
R
L
P
V
V
V
P
V
T
S
---
F
A-
R
-
T
A
G
F
----
A
V
S
L
D
---
G
V
G
I
R
T
T
-
G
-
V
V
R
--
C
D
Q
P
-
R
T
------
I
D
M
K
A
R
G
G
K
R
L
E
R
V
P
E
T
I
M
N
E
-
V
L
G
R
--
L
S
T
I
L
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
56.82
35%
-42
- C3 -
2VL7
-
?
A:
[167-228]
-----------------------------------------------------------------------------------------------
N
--
K
-
D
D
C
L
K
L
E
D
Y
L
I
V
I
D
E
A
H
N
L
L
E
A
D
-
K
-
W
F
T
R
-
K
I
S
R
-
K
M
------
L
E
R
A
L
K
E
I
E
I
V
E
R
L
N
R
I
D
A
K
K
-
V
K
D
Y
--
I
N
L
L
I
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
54.98
21%
-43
* C3 *
1S12
2
?
A:
[1-94]
----------------------------------------
M
I
K
V
T
V
T
N
---
S
F
F
E
V
T
G
H
-
A
P
D
K
T
L
C
A
S
V
S
L
L
T
--
Q
-----
H
V
A
N
F
L
K
A
E
K
K
------------------------
A
K
I
K
K
E
-
S
-
G
Y
L
--
K
V
K
F
-
E
E
------
L
E
N
C
E
V
K
V
L
A
A
M
V
R
S
L
K
E
L
E
Q
K
F
P
S
Q
--
I
R
V
E
V
I
D
N
G
S-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
52.74
17%
-63
- C4 -
3VUB
1
CCDB_ECOLI
A:
[12-96]
--------------------------------------------------------------
S
R
Y
R
L
F
V
D
V
Q
S
D
--
I
I
D
T
P
-
G
R
R
M
V
I
P
L
A
S
A
R
L
L
SD
K
V
S
R
E
L
----
Y
P
V
V
H
---
I
G
--
D
E
S
-
W
-
R
M
M
--
T
T
D
M
-
A
S
------
V
P
V
-
S
V
I
G
E
E
V
A
D
L
S
-
H
R
E
N
D
-
I
K
N
A
--
I
N
L
M
F
W
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
50.71
12%
-37
- C4 -
1M1F
-
PEMK_ECOLX
A:
[1-110]
----------------------------------------
M
E
R
G
E
I
W
L
V
S
L
D
P
T
A
G
H
E
Q
-
Q
G
--
T
R
P
V
L
I
V
T
P
A
--
A
-----
F
N
R
V
T
R
L
P
V
V
V
P
V
T
--
S
-
F
A
R
T
A
-
G
F
A
V
S
L
---
D
G
V
G
I
R
T
T
-
G
-
V
V
R
--
C
D
Q
P
-
R
T
------
I
D
M
K
A
R
G
G
K
R
L
E
R
V
P
E
T
I
M
N
E
-
V
L
G
R
--
L
S
T
I
L
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
50.68
29%
-12
- C3 -
2J1P
1
GGPPS_SINAL
A:
[132-224]
------------------------------------------------------
H
L
A
S
A
-
T
S
S
E
V
S
P
A
R
V
V
R
A
V
--
G
-----
E
L
A
K
A
I
G
T
E
G
L
V
A
G
--
Q
-
V
V
D
I
S
----
L
D
L
N
N
V
G
L
E
H
L
K
F
I
-
H
-
L
H
K
--
T
A
A
L
---------
L
E
A
S
A
V
L
G
G
I
I
G
G
G
S
D
E
E
I
E
R
-
L
R
K
F
--
A
R
C
I
G
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
45.72
21%
-24
- C3 -
4UM2
1
EST1A_HUMAN
A:
[1-582]
S
M
E
L
H
R
L
L
R
V
A
D
N
Q
E
L
Q
L
S
N
L
L
S
RDRIS
P
E
G
L
E
K
M
A
Q
L
R
A
E
L
L
Q
L
Y
E
R
C
I
L
L
D
I
E
F
S
D
N
-
Q
N
--
V
D
Q
I
L
W
K
N
A
F
--
Y
-----
Q
V
I
E
K
F
R
Q
L
V
K
D
P
N
VE
N
-
P
E
Q
I
R
-
N
R
L
L
E
L
L
D
E
G
S
D
F
F
D
S
L
-
L
-
Q
K
L
--
Q
V
T
Y
K
F
K
------
L
E
D
Y
M
D
G
L
A
I
--
R
L
R
K
T
V
K
Y
A
-
L
I
S
A
--
Q
R
C
M
I
C
Q
G
D
I
A
R
Y
R
E
Q
A
S
DTANY
G
K
A
R
S
W
Y
L
K
A
Q
H
I
APKNG
R
P
Y
N
Q
L
A
L
L
A
V
Y
T
RR
K
L
D
A
V
Y
Y
Y
M
R
S
L
A
ASNPI
L
T
A
K
E
S
L
M
S
L
F
E
E
T
K
R
K
A
E
Q
M
EKGLGSLS
P
S
D
L
N
K
R
F
I
L
S
F
L
H
A
H
G
K
L
F
TRIGMET
F
P
A
V
A
E
K
V
L
K
E
F
Q
V
L
L
Q
HSPSPIG
S
T
R
M
L
Q
L
M
T
I
N
M
F
A
V
H
N
SQRS
V
I
Q
E
Q
A
A
A
L
G
L
A
M
F
S
L
L
V
R
R
C
T
C
L
L
K
E
SLSSPEDQDDQDDIKVSSFV
P
D
L
K
E
L
L
P
S
V
K
V
W
S
D
W
M
L
G
Y
PDTWNPPPTSLDLPSHVAVD
V
W
S
T
L
A
D
F
C
N
I
L
T
A
VNQSE
V
P
L
Y
KDPDDD
L
T
L
L
I
L
E
E
D
R
L
L
SGFVPLLAAPQ
D
P
C
Y
V
E
KTSD
K
V
I
A
A
D
C
K
R
V
T
V
L
K
Y
F
L
E
A
L
C
G
QEEPLLAFKGG
K
Y
V
S
VAPV
32
Fugue
44.77
16%
0
* C4 *
2KIE
-
OCRL_HUMAN
A:
[1-124]
----------------------------------GPLGSM
E
P
P
L
P
V
G
A
Q
P
L
A
T
V
E
G
M
E
M
-
K
G
P
L
R
E
P
C
A
L
T
L
A
Q
R
N
G
-----
Q
Y
E
L
I
I
Q
L
H
E
K
E
Q
H
--
V
-
Q
D
I
I
P
I
N
S
H
F
R
C
V
Q
E
A
E
E
T
L
L
I
D
----
I
A
--
S
N
S
G
-
C
K
------
I
R
V
Q
G
-
D
W
I
R
E
R
R
F
E
I
P
D
E
E
H
-
C
L
K
F
--
L
S
A
V
L
A
A
Q
K
A
Q
S-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
43.97
31%
3
- C7 -
1S2W
-
PEPM_MYTED
A:
[217-278]
------------------------------------------------------------------------------------------
T
K
Y
Y
K
T
--
P
-
T
D
H
F
R
-
D
M
G
V
S
M
V
I
W
A
N
H
N
L
R
A
S
V
S
-
A
I
Q
Q
T
T
K
Q
I
-
Y
D
D
QSLVN
V
E
D
K
I
V
S
V
K
E
I
F
R
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
43.96
24%
-50
- C5 -
4L8R
-
ERI1_HUMAN
B:
[97-161]
----------------------------------------
I
I
E
F
P
V
V
L
L
N
T
H
T
L
E
I
E
D
T
-
F
Q
Q
Y
V
R
P
E
I
N
T
Q
L
S
--
D
-----
F
C
I
S
L
T
G
I
T
Q
D
Q
V
D
--
R
-
A
D
T
F
P
-
Q
V
L
K
K
V
I
D
W
M
K
L
K
E
L
G
T
-
K
-
Y
K
Y
--
S
L
L
T
-
D
G
------
S
W
D
M
S
K
F
L
N
I
Q
C
Q
L
S
R
L
K
Y
P
P
-
F
A
K
K
--
W
I
N
I
R
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
43.50
24%
-45
- C5 -
4QOZ
-
ERI1_HUMAN
B:
[97-161]
----------------------------------------
I
I
E
F
P
V
V
L
L
N
T
H
T
L
E
I
E
D
T
-
F
Q
Q
Y
V
R
P
E
I
N
T
Q
L
S
--
D
-----
F
C
I
S
L
T
G
I
T
Q
D
Q
V
D
--
R
-
A
D
T
F
P
-
Q
V
L
K
K
V
I
D
W
M
K
L
K
E
L
G
T
-
K
-
Y
K
Y
--
S
L
L
T
-
D
G
------
S
W
D
M
S
K
F
L
N
I
Q
C
Q
L
S
R
L
K
Y
P
P
-
F
A
K
K
--
W
I
N
I
R
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
42.70
30%
-15
- C3 -
1RTW
1
?
A:
[132-190]
------------------------------------------------------------------------------------------------------------
Y
Y
E
A
W
K
W
V
R
E
N
L
K
E
R
-
S
P
Y
Q
E
--
F
I
N
H
-
W
S
------
S
Q
E
F
G
E
Y
V
K
R
I
E
K
I
L
N
S
L
A
E
K
-
H
G
E
F
E
K
E
R
A
R
E
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
41.57
31%
-14
- C7 -
1M1B
1
PEPM_MYTED
A:
[217-282]
------------------------------------------------------------------------------------------
T
K
Y
Y
K
T
--
P
-
T
D
H
F
R
-
D
M
G
V
S
M
V
I
W
A
N
H
N
L
R
A
S
V
S
-
A
I
Q
Q
T
T
K
Q
I
-
Y
D
D
QSLVN
V
E
D
K
I
V
S
V
K
E
I
F
R
L
Q
R
D
D
E
L
V
-
Q
A
E
D
--
K
Y
L
P
K
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
41.37
31%
-2
* C7 *
1S2V
-
PEPM_MYTED
A:
[217-282]
------------------------------------------------------------------------------------------
T
K
Y
Y
K
T
--
P
-
T
D
H
F
R
-
D
M
G
V
S
M
V
I
W
A
N
H
N
L
R
A
S
V
S
-
A
I
Q
Q
T
T
K
Q
I
-
Y
D
D
QSLVN
V
E
D
K
I
V
S
V
K
E
I
F
R
L
Q
R
D
D
E
L
V
-
Q
A
E
D
--
K
Y
L
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
41.06
31%
-10
- C7 -
1S2T
-
PEPM_MYTED
A:
[217-282]
------------------------------------------------------------------------------------------
T
K
Y
Y
K
T
--
P
-
T
D
H
F
R
-
D
M
G
V
S
M
V
I
W
A
N
H
N
L
R
A
S
V
S
-
A
I
Q
Q
T
T
K
Q
I
-
Y
D
D
QSLVN
V
E
D
K
I
V
S
V
K
E
I
F
R
L
Q
R
D
D
E
L
V
-
Q
A
E
D
--
K
Y
L
P
K
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
40.94
11%
-46
- C4 -
2KMT
-
?
A:
[15-100]
-------------------------------------------------------------
A
K
T
Y
P
Y
F
V
D
V
Q
S
D
--
L
LDNL-
N
T
R
L
V
I
P
L
T
P
I
E
L
L
DK
K
A
P
S
H
L
----
C
P
T
I
H
-----
I
D
E
G
D
-
F
-
I
M
L
--
T
Q
Q
M
-
T
S
------
V
P
V
-
K
I
L
S
E
P
V
N
E
L
S
-
T
F
R
N
E
-
I
I
A
A
--
I
D
F
L
I
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
40.17
33%
-68
- C5 -
2HUH
-
?
A:
[84-119]
------------------------------------------------
V
A
V
Q
L
I
A
F
K
D
G
-
K
P
A
A
I
K
P
A
V
S
V
E
L
R
--
I
-----
D
T
V
K
F
Y
K
L
H
T
F
S
A
S
--
D
-
F
F
E
E
P
-
A
L
I
Y
D
I
V
K
D
D
V
P
A
K
Q
V
Y
-
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
39.15
31%
-3
- C7 -
1S2U
1
PEPM_MYTED
A:
[217-282]
------------------------------------------------------------------------------------------
T
K
Y
Y
K
T
--
P
-
T
D
H
F
R
-
D
M
G
V
S
M
V
I
W
A
N
H
N
L
R
A
S
V
S
-
A
I
Q
Q
T
T
K
Q
I
-
Y
D
D
QSLVN
V
E
D
K
I
V
S
V
K
E
I
F
R
L
Q
R
D
D
E
L
V
-
Q
A
E
D
--
K
Y
L
P
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
38.73
24%
-43
- C5 -
1W0H
1
A:
[33-97]
----------------------------------------
I
I
E
F
P
V
V
L
L
N
T
H
T
L
E
I
E
D
T
-
F
Q
Q
Y
V
R
P
E
I
N
T
Q
L
S
--
D
-----
F
C
I
S
L
T
G
I
T
Q
D
Q
V
D
--
R
-
A
D
T
F
P
-
Q
V
L
K
K
V
I
D
W
M
K
L
K
E
L
G
T
-
K
-
Y
K
Y
--
S
L
L
T
-
D
G
------
S
W
D
M
S
K
F
L
N
I
Q
C
Q
L
S
R
L
K
Y
P
P
-
F
A
K
K
--
W
I
N
I
R
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------