@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs0473: (2015-12-01 )
MKKKLVGFIVLALSTIILVACSNDSLEGEYYWINDARNQHMATIKGDKGYVESEGGYSIKIDSELKIIESKFGSEKYSYKDGKLTTNFTGVESDFYKKGSKACEEALKKYGYKEVGKE
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10......--..20.......--.30.....----...40----...---......50..---.....----.---60.........70........80........-90........--100...--------....110......------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKK
K
L
V
G
F
I
V
L
A
L
S
T
I
I
--
L
V
A
CSNDSLE
G
--
E
Y
Y
W
INDA----RN
Q
H
-----
M
A
T
---IKGDK
G
Y
V
ES---EG
G
Y
S
----
I
---
K
-IDSEL
K
I
I
E
S
KFGSEKYSYKDG
K
L
T
TNFT-GV
E
S
D
F
Y
K
K
G
--
S
K
A
C
E
E
--------
A
L
K
KY
G
Y
K
E
VGKE------------------------------------------------------
57
Fugue
82.44
23%
-11
- C9 -
2CO5
-
?
A:
[5-96]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
Y
M
R
I
N
Y
Y
I
I
L
K
V
L
V
I
-------
N
G
S
R
L
E
---------------
K
K
R
L
-----
R
S
E
---
I
L
K
R
F
D
I
D
I
S
---
D
G
V
L
Y
----
P
---
L
-
I
D
S
---
L
I
D
D
K
I
L
R
E
E
E
A
-
P
D
G
K
V
L
F
L
---------
T
E
K
G
--
M
K
E
F
E
E
--------
L
H
E
F
F
K
K
I
V
C
H
H
H
------------------------------------------------------
54
Fugue
77.16
30%
13
- C11 -
2KK4
-
Y2094_ARCFU
A:
[1-95]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
G
--
H
M
D
L
I
----------
C
-----
M
Y
V
---
F
K
G
E
E
S
F
G
E
S
---
I
D
V
Y
G
DYL
I
V
---
K
-
V
G
T
E
F
L
A
V
P
K
K
S
---
I
K
S
V
E
D
G
R
I
V
I
G
E
F
-
D
-
E
E
E
A
R
E
L
G
--
R
K
W
L
E
E
KSKPVTLE
E
L
K
S
Y
G
F
G
E
E
G
E
G
S-----------------------------------------------------
52
Fugue
71.97
12%
-32
- C9 -
1AOP
2
?
?:
[273-352]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
G
W
V
K
G
I
----
D
D
N
W
-----
H
L
T
---
L
F
I
E
N
G
R
I
L
D
---
Y
P
A
------
R
---
P
-
L
K
T
G
L
L
E
I
A
K
I
H
K
G
D
F
R
I
T
A
N
Q
--
N
L
I
I
A
-
G
V
P
----
E
S
E
--
K
A
K
I
E
K
--------
I
A
K
E
S
G
L
M
N
A
V
T
P
------------------------------------------------------
53
Fugue
69.77
14%
-42
- C9 -
1IUK
-
?
A:
[1-136]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
D
Q
E
L
R
A
Y
L
S
Q
A
K
T
I
A
--
V
L
G
A
H
K
D
P
S
R
P
--
A
H
Y
V
P
R
Y
L
----
R
E
Q
G
YR
V
L
P
V
N
P
---
R
F
Q
G
E
E
L
F
G
E
---
E
A
V
A
S
----
L
---
L
D
L
K
E
P
V
D
I
L
D
V
F
R
P
P
S
A
L
M
D
H
L
P
E
V
L
A
L
---
R
P
G
L
V
W
L
Q
S
G
IR
H
P
E
F
E
K
--------
A
L
K
E
A
G
I
P
V
V
A
D
R
C
L
M
V
E
H
K
R
L
F
RG------------------------------------------
59
Fugue
64.37
11%
-27
- C7 -
2B0V
3
?
A:
[6-153]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
P
N
V
T
V
A
A
V
I
E
Q
D
D
K
Y
L
--
L
V
E
E
I
P
R
G
T
A
I
--
K
L
N
Q
P
A
G
H
----
L
E
P
G
-----
E
S
I
---
I
Q
A
C
S
R
E
V
L
E
---
E
T
G
H
S
----
F
---
L
-
P
E
V
L
T
G
I
Y
H
W
T
C
A
S
N
G
T
T
Y
L
R
F
T
F
S
G
Q
V
V
-
S
F
D
P
D
R
K
L
D
T
--
G
---
I
V
--------
R
A
A
W
F
S
I
D
E
I
R
A
K
QAMHRT
P
L
V
M
Q
C
I
E
D
Y
H
A
GKRYPLDI
L
Q
Y
Y
DGS---------------------
56
Fugue
63.30
14%
-56
* C9 *
4U1D
-
EIF3A_YEAST
A:
[9-496]
FR
P
E
N
A
I
K
R
A
D
E
L
I
S
V
GE
K
Q
A
A
L
Q
S
L
H
D
F
I
T
ARRIRWATPSTV
E
P
V
V
F
K
F
L
E
I
G
V
E
L
KK
G
K
L
L
K
D
G
L
H
Q
Y
K
K
L
I
QGS
T
E
G
L
V
S
V
G
A
V
A
R
K
F
I
D
L
V
E
S
K
I
A
S
E
Q
T
R
A
D
E
L
Q
K
Q
E
I
DA
I
T
S
W
L
R
F
T
W
E
S
Y
R
A
V
L
D
L
L
RNNALL
E
I
T
Y
S
G
V
V
K
K
T
M
H
F
C
L
K
Y
QR
K
N
E
F
K
R
L
A
E
M
L
R
Q
H
L
D
A
A
N
Y
Q
Q
SKSGNNLVDLSD
A
D
T
L
Q
R
Y
L
D
Q
R
F
Q
Q
V
D
V
S
V
K
L
EL
W
H
E
A
Y
R
S
I
E
D
V
F
H
L
M
K
I
SKRAPK
P
S
T
L
A
N
Y
Y
E
N
L
V
K
V
F
F
V
S
GD
P
L
L
H
T
T
A
W
K
K
F
Y
K
L
Y
S
T
NPRAT
E
E
E
F
K
T
Y
S
S
T
I
F
L
S
A
I
S
T
Q
L
DE
I
P
S
I
G
Y
D
P
H
L
R
--
M
Y
R
L
L
N
L
D
AKPT
R
K
E
M
-----
L
Q
S
---
I
I
E
D
E
S
I
Y
------
G
K
V
D
----
E
---
E
-
L
K
E
L
Y
D
I
I
E
V
N
F
D
V
D
T
V
K
Q
Q
L
E
N
L
L
V
K
L
S
---
S
K
T
Y
F
S
Q
Y
--
I
A
P
L
R
D
--------
V
I
M
R
R
V
F
V
A
A
S
Q
K
F
TTVS
Q
S
E
L
Y
K
L
A
TLPAPL
D
L
S
A
W
D
I
E
K
S
L
L
Q
A
A
V
E
DY
V
S
I
T
I
DHESA
K
V
T
F
A
K
58
Fugue
63.22
15%
-19
- C9 -
4EYT
-
?
A:
[10-106]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
Q
N
C
L
I
K
I
I
N
I
P
Q
G
T
L
K
--
A
E
V
V
L
A
V
R
H
L
G
--
Y
E
F
Y
C
D
Y
I
----
D
G
Q
A
-----
M
I
R
---
F
Q
N
--------------------------
S
D
E
Q
R
L
A
I
Q
K
L
----
L
N
H
N
N
N
K
L
Q
I
E
I
R
-
G
Q
I
C
D
V
I
S
----
T
I
P
E
D
E
--------
E
K
N
Y
W
N
Y
I
K
F
K
K
N
------------------------------------------------------
16
HHSearch
55.14
13%
-24
* C11 *
3GE2
6
?
A:
[49-117]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
I
D
G
--
T
Y
T
G
Q
D
-
D
----
G
D
R
I
-----
T
L
V
---
V
T
G
T
T
G
T
W
T
E
L
E
S
D
G
D
Q
K
----
V
K
Q
V
T
-
F
D
S
A
N
Q
R
M
I
I
G
D
D
V
K
I
Y
T
V
N
G
N
Q
I
V
V
D
D
M
-
D
R
D
P
S
D
Q
I
V
L
--
T
K
-------------------------------------------------------------------------------
2
PsiBlast_PDB
54.53
34%
-64
- C8 -
3WD5
-
A:
[18-58]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
N
P
Q
A
E
G
--
Q
L
Q
W
L
N
D
R
----
A
N
A
L
-----
L
A
N
G
V
E
L
R
D
N
Q
L
V
V
P
S
---
E
G
L
Y
L
----
I
---
Y
-
S
Q
V
L
F
K
G
Q
G
C
P
S
T
H
V
L
L
T
H
T
I
S
R
I
A
V
S
Y
Q
-
T
K
V
N
L
L
S
A
I
K
--
S
P
C
Q
R
E
--------
T
P
E
G
A
E
A
K
P
W
Y
E
P
------------------------------------------------------
1
PsiBlast_PDB
52.95
34%
-55
- C8 -
1A8M
-
TNFA_HUMAN
A:
[18-58]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
N
P
Q
A
E
G
--
Q
L
Q
W
L
N
D
R
----
A
N
A
L
-----
L
A
N
GVE
L
R
D
N
Q
L
V
V
P
S
---
E
G
L
Y
L
----
I
---
Y
-
S
Q
V
L
F
K
G
Q
G
C
P
S
T
H
V
L
L
T
H
T
I
S
R
I
A
V
S
Y
Q
-
T
K
V
N
L
L
S
A
I
K
--
S
P
C
Q
R
E
--------
T
P
E
G
A
E
A
K
P
W
Y
E
P
------------------------------------------------------
61
Fugue
52.22
9%
-23
- C9 -
1WIJ
-
EIL3_ARATH
A:
[162-288]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SQFVLQD
L
Q
D
A
T
L
G
S
L
L
S
S
L
M
Q
H
C
--
D
P
P
Q
R
K
Y
P
L
E
K
GT
P
P
P
W
W
P
T
G
----
N
E
E
W
-----
W
V
K
---
L
G
L
P
K
S
Q
S
P
P
Y
--
R
K
P
H
D
----
L
---
K
-
K
M
W
K
V
G
V
L
T
A
V
I
N
H
M
L
P
D
I
A
K
I
K
R
H
V
R
Q
S
K
C
L
Q
D
K
M
T
A
K
E
--
S
A
I
W
L
A
--------
V
L
N
--
Q
E
E
S
L
I
Q
Q
------------------------------------------------------
4
PsiBlast_PDB
43.95
40%
25
- C10 -
2ZD7
-
VPS75_YEAST
A:
[95-119]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
M
Y
D
T
R
D
F
S
I
T
F
H
F
H
-
G
I
E
G
D
F
K
E
Q
Q
--
V
T
K
V
F
Q
--------
I
K
K
G
K
D
D
Q
E
D
G
I
L
------------------------------------------------------
15
PsiBlast_CBE
43.48
34%
-37
- C10 -
4MTK
2
?
A:
[162-193]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
G
--
I
Y
Y
W
F
R
H
E
----
Q
K
R
H
-----
I
L
V
---
L
S
D
A
Y
G
A
H
R
S
---
P
G
G
Y
A
----
S
---
V
-
P
Y
Y
P
P
T
L
G
H
R
E
R
D
H
F
F
D
W
Q
M
A
R
E
V
Q
P
G
S
L
-
T
L
N
D
Y
D
F
Q
R
P
--
G
A
R
L
E
V
--------
R
S
N
I
A
R
P
H
A
A
A
D
Y
------------------------------------------------------
6
PsiBlast_PDB
42.21
40%
23
- C10 -
3Q68
-
VPS75_YEAST
A:
[95-119]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
M
Y
D
T
R
D
F
S
I
T
F
H
F
H
-
G
I
E
G
D
F
K
E
Q
Q
--
V
T
K
V
F
Q
--------
I
K
K
G
K
D
D
Q
E
D
G
I
L
------------------------------------------------------
60
Fugue
41.84
46%
98
- C3 -
1M5N
-
Q:
[67-94]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
L
T
Q
E
T
N
-
K
V
E
T
--
Y
K
--------
E
Q
--------
P
L
K
T
P
G
K
K
K
K
G
K
P
------------------------------------------------------
5
PsiBlast_PDB
41.54
40%
27
- C10 -
3Q66
-
RT109_YEAST (first)
A:
[95-119]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
M
Y
D
T
R
D
F
S
I
T
F
H
F
H
-
G
I
E
G
D
F
K
E
Q
Q
--
V
T
K
V
F
Q
--------
I
K
K
G
K
D
D
Q
E
D
G
I
L
------------------------------------------------------
55
Fugue
40.98
8%
25
- C4 -
1IC2
-
TPM1_CHICK
A:
[1-79]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
------------------------
D
A
I
K
K
--
K
M
Q
M
L
K
L
D
----
K
E
N
A
-----
L
D
R
---
A
E
Q
A
E
A
D
K
K
A
---
A
E
E
R
S
----
K
---
Q
-
L
E
D
E
L
V
A
L
Q
K
K
L
K
G
T
E
D
E
L
D
K
Y
S
E
S
L
K
D
A
-
Q
E
K
L
E
L
A
D
K
K
--
A
T
-------------------------------------------------------------------------------
7
PsiBlast_PDB
40.84
40%
22
- C10 -
3C9D
-
VPS75_YEAST
A:
[95-119]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
M
Y
D
T
R
D
F
S
I
T
F
H
F
H
-
G
I
E
G
D
F
K
E
Q
Q
--
V
T
K
V
F
Q
--------
I
K
K
D
G
I
L
T
S
E
P
V
P
------------------------------------------------------
8
PsiBlast_PDB
39.65
40%
16
- C10 -
3Q33
-
VPS75_YEAST
B:
[95-119]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
M
Y
D
T
R
D
F
S
I
T
F
H
F
H
-
G
I
E
G
D
F
K
E
Q
Q
--
V
T
K
V
F
Q
--------
I
K
K
G
D
G
I
L
T
S
E
P
V
------------------------------------------------------
9
PsiBlast_PDB
38.40
40%
31
* C10 *
3Q35
-
VPS75_YEAST
B:
[95-119]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
M
Y
D
T
R
D
F
S
I
T
F
H
F
H
-
G
I
E
G
D
F
K
E
Q
Q
--
V
T
K
V
F
Q
--------
I
K
K
G
D
G
I
L
T
S
E
P
V
------------------------------------------------------