@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs0474: (2015-12-01 )
MDLSTVIKKTEDLGITILFCNMPKTKGRYDSTLEKPCIYVDKSLSDIEKINIILHEKMHFTKNDQSNCLSYISSYSHHIENQAEKDRILDFMNLINEEYPIDESFNYINYMKNACVPEKYESYIKNLAKEFYLRNHRKES
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.-...----...------.20..-......30..-...---...40.-.....-----..50--------------........60........------70........80--...-.....-90-...-...-------..100.......--110.......120-......-..130..-......140-----------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
D
L
S
T
V
I
KKTED-L
G
I
----
T
I
L
------
F
CNMP-KTKGRYDSTL-EK
P
---
C
I
Y
VDK-SLS
D
I
-----
E
K
I
N
--------------
I
I
L
H
EKMHFTKND
Q
S
N
C
L
------
S
Y
I
S
S
Y
S
H
H
I
E
N
--
Q
A
E
-
K
D
R
I
L
-
D
F
-
M
N
L
-INE-------EYPIDESF
N
Y
I
N
--
Y
M
K
NACV
P
E
K
Y
E
--
S
Y
I
K
N
L
-
A
K
E
F
-
Y
L
-
R
NHRKES-------------------------------------------------------------------
45
Fugue
82.97
18%
-34
- C1 -
4HR1
-
?
A:
[3-120]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------F
N
G
A
Q
T
V
I
Q
K
I
S
W
-
L
R
T
----
A
I
A
------
F
L
K
G
Y
M
E
T
T
G
A
T
---------------
K
K
-
E
L
E
Q
V
-----
E
K
L
K
--------------
E
R
V
D
E
I
A
T
A
V
N
W
D
V
---
Y
------
A
Q
Y
A
R
G
D
F
N
L
L
S
--
D
D
E
-
Y
K
E
I
Q
-
K
A
-
L
L
V
-
L
E
D
I
------
K
E
Q
I
I
V
E
M
L
R
V
G
--
L
A
Q
G
Q
M
G
T
L
K
I
S
--
D
Y
L
D
S
L
-
D
S
--------------------------------------------------------------------------------
51
Fugue
75.82
18%
-73
* C4 *
2XXS
-
MXIG_SHIFL
A:
[1-107]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
S
N
L
-
A
P
F
----
R
L
L
------
V
K
L
T
N
-
G
V
G
D
E
F
P
L
Y
Y
-
G
N
N
---
L
I
V
L
G
R
-
T
I
E
T
L
-----
E
F
G
N
--------------
D
N
F
P
E
N
I
I
P
V
T
D
S
K
S
D
G
I
------
I
Y
L
T
I
S
------------
K
D
N
I
C
-
Q
F
-
S
D
E
-
K
G
E
-------
Q
I
D
I
N
S
Q
F
N
S
F
E
--
Y
------------------
D
-
G
I
S
F
-
H
L
-
K
N
M
R
E
D
K
-------------------------------------------------------------------
48
Fugue
72.42
18%
-14
- C5 -
1W3B
-
OGT1_HUMAN
B:
[1-388]
GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI
H
H
F
E
K
A
V
T
L
D
P
N
F
L
D
A
----
Y
I
N
------
L
G
N
V
L
-
K
E
A
R
I
F
D
R
A
V
-
A
A
Y
---
L
R
A
L
S
L
-
S
P
N
----------
H
--------------
A
V
V
H
G
N
L
A
C
V
Y
Y
E
Q
G
L
I
D
------
L
A
I
D
T
Y
R
R
A
I
E
L
--
Q
P
H
F
P
D
A
Y
C
-
N
L
-
A
N
A
-
L
K
E
-------
K
G
S
V
A
E
A
E
D
C
Y
N
--
T
A
L
R
L
C
-
P
T
H
A
D
--
S
Y
R
K
A
L
-
E
V
F
P
E
F
A
-
A
A
H
S
N
L
A
SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD-------------------------
47
Fugue
71.60
18%
-41
- C6 -
2KJG
-
?
A:
[1-99]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
I
L
E
---------------
D
P
E
------
F
V
K
L
R
-
Q
F
K
G
K
V
N
---------------------
F
-----
N
L
V
M
--------------
Q
I
L
D
E
I
E
L
D
L
R
G
S
D
N
I
K
T
------
S
I
I
Y
V
Y
S
S
H
L
D
E
--
I
R
K
-
N
K
E
F
Y
-
D
M
-
I
A
E
-
I
L
Q
-------
R
Y
Y
-----------------
K
K
I
G
I
E
--
N
V
N
Q
L
I
-
L
T
T
I
-
K
L
-
E
H
H
H
H
H
H
-------------------------------------------------------------------
7
PsiBlast_PDB
62.80
27%
-35
- C6 -
2Q92
1
MAP1_ECOLI
A:
[11-70]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
M
R
V
A
G
R
L
A
A
E
V
L
------
E
M
I
E
P
Y
V
K
P
G
V
S
--
T
G
E
-
L
D
R
I
C
N
D
Y
---
I
-
V
N
E
-------
Q
H
A
V
S
A
C
L
G
Y
H
G
--
Y
P
K
S
V
C
I
S
I
N
E
V
--
V
C
H
G
I
P
-
D
D
A
K
-
L
L
-
K
D
G
D
I
V
N
-------------------------------------------------------------------
14
PsiBlast_PDB
62.53
27%
-31
- C6 -
4PNC
2
?
A:
[12-71]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
M
R
V
A
G
R
L
A
A
E
V
L
------
E
M
I
E
P
Y
V
K
P
G
V
S
--
T
G
E
-
L
D
R
I
C
N
D
Y
---
I
-
V
N
E
-------
Q
H
A
V
S
A
C
L
G
Y
H
G
--
Y
P
K
S
V
C
I
S
I
N
E
V
--
V
C
H
G
I
P
-
D
D
A
K
-
L
L
-
K
D
G
D
I
V
N
-------------------------------------------------------------------
53
Fugue
62.40
16%
-39
- C3 -
3H7H
2
SPT4H_HUMAN
A:
[3-120]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
A
L
E
T
V
P
K
D
L
R
-
H
L
R
----
A
C
L
------
L
C
S
L
V
-
K
T
I
D
Q
F
E
Y
D
G
-------
C
D
N
C
D
A
-
Y
L
Q
----------------------------------
M
K
G
N
R
E
M
V
Y
------
D
C
T
S
S
S
F
D
G
I
I
A
MM
S
P
E
-
D
S
W
V
S
-
K
W
-
Q
R
V
-
S
N
F
-------
K
P
G
-----
V
Y
A
V
--
S
V
T
G
R
-
L
P
Q
G
I
V
--
R
E
L
K
S
R
-
G
V
A
Y
-
K
S
-
R
D
T
A
I
K
T
-------------------------------------------------------------------
2
PsiBlast_PDB
61.91
27%
-33
- C6 -
4MAT
-
MAP1_ECOLI
A:
[12-71]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
M
R
V
A
G
R
L
A
A
E
V
L
------
E
M
I
E
P
Y
V
K
P
G
V
S
--
T
G
E
-
L
D
R
I
C
N
D
Y
---
I
-
V
N
E
-------
Q
H
A
V
S
A
C
L
G
Y
H
G
--
Y
P
K
S
V
C
I
S
I
N
E
V
--
V
C
H
G
I
P
-
D
D
A
K
-
L
L
-
K
D
G
D
I
V
N
-------------------------------------------------------------------
9
PsiBlast_PDB
61.56
27%
-30
- C6 -
2GTX
1
MAP1_ECOLI
A:
[9-68]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
M
R
V
A
G
R
L
A
A
E
V
L
------
E
M
I
E
P
Y
V
K
P
G
V
S
--
T
G
E
-
L
D
R
I
C
N
D
Y
---
I
-
V
N
E
-------
Q
H
A
V
S
A
C
L
G
Y
H
G
--
Y
P
K
S
V
C
I
S
I
N
E
V
--
V
C
H
G
I
P
-
D
D
A
K
-
L
L
-
K
D
G
D
I
V
N
-------------------------------------------------------------------
6
PsiBlast_PDB
61.31
27%
-34
- C6 -
2P9A
1
MAP1_ECOLI
A:
[11-70]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
M
R
V
A
G
R
L
A
A
E
V
L
------
E
M
I
E
P
Y
V
K
P
G
V
S
--
T
G
E
-
L
D
R
I
C
N
D
Y
---
I
-
V
N
E
-------
Q
H
A
V
S
A
C
L
G
Y
H
G
--
Y
P
K
S
V
C
I
S
I
N
E
V
--
V
C
H
G
I
P
-
D
D
A
K
-
L
L
-
K
D
G
D
I
V
N
-------------------------------------------------------------------
49
Fugue
61.18
13%
-51
* C3 *
4DFR
2
DYR_ECOLI
A:
[1-159]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
S
L
I
A
A
L
A
V
D
-
R
V
I
GMEN
A
M
P
------
W
-
N
L
P
-
A
D
L
A
W
F
K
R
N
T
L
D
K
P
---
V
I
M
G
R
H
-
T
W
E
S
I
GRPLP
G
R
K
N
--------------
I
I
L
S
S
Q
P
--
G
T
D
D
R
V
T
W
V
------
K
S
V
D
E
A
I
A
A
C
G
D
--
V
P
--------
E
I
-
M
V
I
G
G
G
R
-------
V
Y
E
Q
F
L
P
K
--
A
Q
--
K
L
Y
L
T
H
I
D
A
E
V
E
G
D
T
H
F
P
D
Y
-
E
P
D
D
-
W
E
-
S
V
F
S
---
E
F
H
D
A
D
AQNS
H
S
Y
C
F
K
I
L
E
R
R----------------------------------------------
15
PsiBlast_PDB
60.63
27%
-31
- C6 -
1XNZ
1
MAP1_ECOLI
A:
[12-71]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
M
R
V
A
G
R
L
A
A
E
V
L
------
E
M
I
E
P
Y
V
K
P
G
V
S
--
T
G
E
-
L
D
R
I
C
N
D
Y
---
I
-
V
N
E
-------
Q
H
A
V
S
A
C
L
G
Y
H
G
--
Y
P
K
S
V
C
I
S
I
N
E
V
--
V
C
H
G
I
P
-
D
D
A
K
-
L
L
-
K
D
G
D
I
V
N
-------------------------------------------------------------------
46
Fugue
60.22
14%
-26
* C5 *
3HNR
-
Y4108_BACHK
A:
[24-216]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------D
I
Q
Y
K
E
V
F
A
H
Y
E
D
-
I
L
E
----
D
V
V
N
K
SF
G
N
V
L
E
F
G
-
V
G
T
G
N
L
T
N
K
L
-
L
L
A
G
R
T
V
Y
G
I
E
P
-
S
R
E
M
R
-----
M
I
A
K
--------------
E
K
L
P
K
E
F
S
I
T
E
G
D
F
L
S
F
E
V
PTSID
T
I
V
S
T
Y
A
F
H
H
L
T
--
D
D
E
-
K
N
V
A
I
-
A
K
-
Y
S
Q
-
L
L
N
KG
G
K
I
V
F
A
D
T
I
F
A
D
Q
D
A
Y
D
--
K
T
V
E
A
A
K
Q
R
G
F
H
--
Q
L
A
N
D
L
-
Q
T
E
Y
-
Y
T
-
R
I
P
V
M
Q
T
I
F
E
N
N
G
F
H
V
T
F
T
R
LNHF
V
W
V
M
E
A
T
K
QLEHH-------------------------------------
12
PsiBlast_PDB
59.79
27%
-32
- C6 -
1YVM
1
MAP1_ECOLI
A:
[12-71]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
M
R
V
A
G
R
L
A
A
E
V
L
------
E
M
I
E
P
Y
V
K
P
G
V
S
--
T
G
E
-
L
D
R
I
C
N
D
Y
---
I
-
V
N
E
-------
Q
H
A
V
S
A
C
L
G
Y
H
G
--
Y
P
K
S
V
C
I
S
I
N
E
V
--
V
C
H
G
I
P
-
D
D
A
K
-
L
L
-
K
D
G
D
I
V
N
-------------------------------------------------------------------
11
PsiBlast_PDB
59.61
27%
-25
- C6 -
2MAT
1
MAP1_ECOLI
A:
[12-71]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
M
R
V
A
G
R
L
A
A
E
V
L
------
E
M
I
E
P
Y
V
K
P
G
V
S
--
T
G
E
-
L
D
R
I
C
N
D
Y
---
I
-
V
N
E
-------
Q
H
A
V
S
A
C
L
G
Y
H
G
--
Y
P
K
S
V
C
I
S
I
N
E
V
--
V
C
H
G
I
P
-
D
D
A
K
-
L
L
-
K
D
G
D
I
V
N
-------------------------------------------------------------------
4
PsiBlast_PDB
59.30
27%
-31
- C6 -
3MAT
1
MAP1_ECOLI
A:
[12-71]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
M
R
V
A
G
R
L
A
A
E
V
L
------
E
M
I
E
P
Y
V
K
P
G
V
S
--
T
G
E
-
L
D
R
I
C
N
D
Y
---
I
-
V
N
E
-------
Q
H
A
V
S
A
C
L
G
Y
H
G
--
Y
P
K
S
V
C
I
S
I
N
E
V
--
V
C
H
G
I
P
-
D
D
A
K
-
L
L
-
K
D
G
D
I
V
N
-------------------------------------------------------------------
19
PsiBlast_PDB
58.81
27%
-29
- C6 -
2EVO
1
MAP1_ECOLI
A:
[12-71]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
M
R
V
A
G
R
L
A
A
E
V
L
------
E
M
I
E
P
Y
V
K
P
G
V
S
--
T
G
E
-
L
D
R
I
C
N
D
Y
---
I
-
V
N
E
-------
Q
H
A
V
S
A
C
L
G
Y
H
G
--
Y
P
K
S
V
C
I
S
I
N
E
V
--
V
C
H
G
I
P
-
D
D
A
K
-
L
L
-
K
D
G
D
I
V
N
-------------------------------------------------------------------
5
PsiBlast_PDB
58.46
27%
-36
- C6 -
2P98
1
MAP1_ECOLI
A:
[11-70]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
M
R
V
A
G
R
L
A
A
E
V
L
------
E
M
I
E
P
Y
V
K
P
G
V
S
--
T
G
E
-
L
D
R
I
C
N
D
Y
---
I
-
V
N
E
-------
Q
H
A
V
S
A
C
L
G
Y
H
G
--
Y
P
K
S
V
C
I
S
I
N
E
V
--
V
C
H
G
I
P
-
D
D
A
K
-
L
L
-
K
D
G
D
I
V
N
-------------------------------------------------------------------
54
Fugue
58.10
16%
-10
- C4 -
2Z7B
1
?
A:
[34-270]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S
F
T
M
R
R
K
V
F
E
E
L
V
T
A
T
K
I
L
L
N
-
E
G
I
M---
D
T
F
------
G
H
I
S
A
-
R
D
P
E
D
P
A
S
F
F
-
L
A
Q
---
K
L
A
P
S
L
I
T
V
D
D
I
-----
Q
R
F
N
LDGETSDNRPSYLE
R
Y
I
H
S
E
I
Y
K
T
R
P
D
V
Q
C
V
L
------
H
T
H
S
P
A
V
L
P
Y
C
F
--
V
D
T
-
P
L
R
P
V
-
T
H
M
G
A
F
-
I
G
E
-------
S
V
P
V
Y
E
I
R
D
K
H
G
DE
T
D
L
F
G
G
S
P
D
V
C
A
--
D
I
A
E
S
L
G
S
Q
T
V
-
V
L
M
A
R
H
G
V
V
N
V
G
KS
V
R
E
V
V
F
R
A
F
Y
L
E
Q
E
A
A
A
L
T
A
G
L
K
I
GNVKYLS
P
G
E
I
K
T
A
G
K
LVGA
Q
I
D
R
G
W
N
H
W
S
Q
R
L
R
Q
A
GLA
8
PsiBlast_PDB
58.09
27%
-35
- C6 -
2Q94
1
MAP1_ECOLI
A:
[11-70]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
M
R
V
A
G
R
L
A
A
E
V
L
------
E
M
I
E
P
Y
V
K
P
G
V
S
--
T
G
E
-
L
D
R
I
C
N
D
Y
---
I
-
V
N
E
-------
Q
H
A
V
S
A
C
L
G
Y
H
G
--
Y
P
K
S
V
C
I
S
I
N
E
V
--
V
C
H
G
I
P
-
D
D
A
K
-
L
L
-
K
D
G
D
I
V
N
-------------------------------------------------------------------