@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs0481: (2015-12-01 )
MQQVFNVSVPVPDDVVIISKEEYLDLLSDNEQGKWWDIDNLQELLGLGRSKLINDILLNPDIKKEVDLSINPNGFIVYPRGKGSRYKILATRARKYFEENFGSILLNN
Atome Classification :
(20 SA)
----------.........10...--------.....20...---......30......-----..40.----......------------.50.......----..60....------....-----70-.......-------.80-..-----......90.--.......100......----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------MQ
Q
V
F
N
VSVPVPD
D
--------
V
V
I
I
S
K
-
E
E
Y
---
L
D
L
LSDNEQGKWW
D
-----
I
D
N
L
Q
----
E
L
L
GL
G
------------
R
S
-
K
L
I
N
D
IL----LNPDIK
K
E
------
V
D
L
S
-----IN-P
N
G
F
I
V
Y
-------PRG-KG-----S
R
Y
K
I
L
A
T
R
--
A
R
K
Y
F
E
E
N
F
G
S
I
LLNN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
Fugue
76.86
26%
-61
- C3 -
4DY5
3
?
A:
[1-111]
------------
T
G
K
N
V
N
V
E
F
D
K
G
--------
Q
---
N
S
-
A
R
Y
---
S
G
V
I
K
----
G
Y
D
Y
D
-----
T
Y
N
F
Q
A
R
KG
Q
K
V
H
V
S
------------
I
S
N
E
G
A
D
T
Y
L
----
F
G
P
G
I
S
D
S
------
V
D
L
S
RYSSE
L
D
-
G
N
G
Q
Y
T
L
-------
P
A
S
-
G
K
-----
Y
E
L
K
V
L
Q
T
R
N
E
A
R
K
N
K
A
K
K
Y
S
V
N
I
Q
I
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
45
Fugue
70.53
17%
-105
- C6 -
4J38
1
?
A:
[20-151]
----------
E
F
S
K
F
T
V
K
I
K
N
K
D
K
SGNWTDL
G
D
L
V
V
R
K
-
E
E
N
G
I
D
T
G
L
N
A
G
G
H
S
A
T
F
F
S
L
E
EEV
V
N
N
F
V
----
K
V
M
T
E
G
G
S
F
K
T
S
L
Y
Y
G
Y
K
E
E
-
Q
S
V
I
N
G
I
----
Q
N
K
E
I
I
T
K
------
I
E
-
K
-----
I
D
-
G
T
E
Y
I
T
F
S
G
D
KIKN
S
G
D
-
K
V
-----
A
E
Y
A
I
S
L
E
E
--
L
K
K
N
L
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
62.07
18%
-101
- C8 -
1Y6U
-
?
A:
[9-64]
----------------------------------------------------
W
E
R
Y
T
L
T
-----
I
E
E
A
S
----
K
Y
F
R
I
G
------------
E
N
-
K
L
R
R
L
A
E
----
E
N
K
------------------------
N
A
N
W
L
I
---------
M
-
N
G
-----
N
R
I
Q
I
K
R
K
Q
--
F
E
K
I
I
D
T
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
Fugue
57.73
24%
-29
* C9 *
2RRE
-
NVL_MOUSE
A:
[1-74]
----------
M
K
P
R
P
G
V
F
---
V
D
R
--------
K
L
K
Q
R
V
-
I
Q
Y
---
L
S
S
---
N
R
C
G
K
Y
V
D
-----
T
G
I
L
A
----
S
D
L
Q
R
L
------------
Y
S
-
V
-----------------------------------------
D
Y
-------
G
R
R
-
K
R
-----
N
A
F
R
I
Q
V
E
K
--
V
F
S
I
I
S
S
E
K
E
---
L
K
N
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
57.34
15%
-57
- C8 -
1J9I
-
TERS_LAMBD
A:
[2-55]
--------------------------------------------------------
E
V
N
-----
K
K
Q
L
A
----
D
I
F
G
A
S
------------
I
R
-
T
I
Q
N
W
Q
E
----
Q
G
M
P
V
L
R
---------------------------------
G
G
G
-
K
G
-----
N
E
V
L
Y
D
S
A
A
--
V
I
K
W
Y
A
E
R
D
A
E
I
E
N
E
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
56.94
14%
-68
- C8 -
2KVV
-
?
A:
[6-71]
----------------------------------------------------
F
N
E
E
W
M
V
-----
E
K
A
L
M
----
V
R
T
G
L
G
------------
A
R
-
Q
I
E
S
Y
R
Q
GAWI
E
G
V
H
F
K
R
V
----------------------------------
S
P
S
G
EKTLR
G
T
T
W
Y
N
Y
P
E
--
I
N
K
F
I
R
D
S
L
E
H
H
H
H
H
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
48
Fugue
54.84
18%
-18
- C9 -
1LAT
4
GCR_RAT
A:
[5-75]
----------------------------------------
R
P
---
C
L
V
C
S
D
E
A
S
G
C
H
Y
G
-----
V
L
T
C
E
----
G
C
K
A
F
F
------------
K
R
-
A
V
E
G
Q
H
------
N
Y
L
C
K
Y
E
------
G
K
C
I
-----
I
D
-------------------
K
I
-----
R
R
K
N
C
P
A
C
R
--
Y
R
K
C
L
Q
A
G
M
N
L
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
Fugue
54.82
12%
-99
- C4 -
1UC2
6
RTCB_PYRHO
A:
[2-481]
V
V
P
L
K
R
IDKI
R
W
E
I
P
K
F
D
K
R
M
R
V
P
--------
G
R
V
Y
A
D
-
E
V
L
---
L
E
K
M
K
N
D
R
-----
T
-----
L
E
Q
A
T
----
N
V
A
M
L
--------------
P
-
G
I
Y
K
Y
S
I
----
V
M
P
D
G
H
Q
G
YGFPIG
G
V
A
A
-----
F
D
-
V
K
E
G
V
I
S
-------
P
G
G
-
I
G
-----
Y
D
I
---------------
N
C
G
V
R
L
I
R
T
NLTEKEVRPR
I
K
Q
L
V
D
T
L
F
K
N
V
PSGVGSQGRIKLHWTQI
D
D
V
L
V
D
G
A
K
W
A
V
D
N
GYGWERDLERLEEGGRMEGADPEAVS
Q
R
A
K
Q
R
G
A
PQLGSLGSGN
H
F
L
E
VQVVDKIFD
P
E
V
A
K
A
Y
GLFEG
Q
V
V
V
M
V
H
T
G
SR
G
L
G
H
Q
V
A
S
D
Y
L
R
I
M
E
R
A
IRKYRIPWPDRELVSVPFQS
E
E
G
Q
R
Y
F
S
A
M
K
A
A
A
N
F
A
W
A
N
R
Q
M
I
T
H
W
V
R
E
S
F
Q
E
V
FKQDPEGDLGMDIV
Y
D
V
A
H
N
I
G
K
V
E
E
H
E
V
DG
K
R
V
K
V
I
V
H
R
K
G
A
T
R
A
F
P
PGHEAVPRLYRDVG
Q
P
V
L
I
PGSMG
T
A
S
Y
I
L
A
G
T
E
G
A
M
K
ETFGSTCHGAGRVLS
R
K
A
A
T
R
Q
Y
R
G
D
R
I
R
Q
E
L
L
N
R
G
I
Y
V
R
A
AS
M
R
V
V
A
E
E
APGAYKN
V
D
N
V
V
K
V
V
S
E
A
GI
A
K
L
V
A
R
M
R
P
IGVAKG
6
PsiBlast_PDB
52.51
28%
-28
- C8 -
4NPA
1
?
A:
[227-265]
-----------------------------------------------------------------------------------------------
I
V
N
E
L
V
----
I
M
P
D
I
E
K
R
------
L
E
A
F
-----
V
R
M
A
H
G
I
I
I
F
-------
P
G
G
-
P
G
-----
T
A
E
E
L
L
Y
I
L
--
G
I
M
M
H
P
E
N
A
D
Q
P
M
P
I
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
51.96
14%
-31
- C8 -
1Z4H
-
TORI_ECOLI
A:
[7-62]
-----------------------------------------------------
P
D
S
L
V
D
-----
L
K
F
I
M
----
A
D
T
G
F
G
------------
K
T
-
F
I
Y
D
R
I
K
----
S
-
G
D
L
P
K
A
---------------------------------
K
V
-
I
H
-----
G
R
A
R
W
L
Y
R
D
--
H
C
E
F
K
N
K
L
L
S
R
A
N
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
51.44
29%
-32
- C8 -
3RS8
-
NNR_THEMA
A:
[277-330]
----------------
L
A
V
P
F
P
Q
N
--------
L
I
A
T
S
R
F
P
E
L
---
I
S
V
P
I
D
T
E
K
G
-
F
F
S
-----
L
Q
N
L
Q
----
E
C
L
E
L
--------------
S
-
K
D
V
D
V
V
A
----
I
G
P
G
L
G
N
N
------
E
H
V
R
-----
E
F
-
V
N
E
F
L
K
T
-------
L
E
K
-
P
A
-----
V
I
D
A
D
A
I
N
V
--
L
D
T
S
V
L
K
E
R
K
S
P
A
V
L
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
51.25
29%
-38
- C8 -
3RTA
-
NNR_THEMA
A:
[277-330]
----------------
L
A
V
P
F
P
Q
N
--------
L
I
A
T
S
R
F
P
E
L
---
I
S
V
P
I
D
T
E
K
G
-
F
F
S
-----
L
Q
N
L
Q
----
E
C
L
E
L
--------------
S
-
K
D
V
D
V
V
A
----
I
G
P
G
L
G
N
N
------
E
H
V
R
-----
E
F
-
V
N
E
F
L
K
T
-------
L
E
K
-
P
A
-----
V
I
D
A
D
A
I
N
V
--
L
D
T
S
V
L
K
E
R
K
S
P
A
V
L
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
51.13
29%
-35
- C8 -
3RS9
-
NNR_THEMA
A:
[277-330]
----------------
L
A
V
P
F
P
Q
N
--------
L
I
A
T
S
R
F
P
E
L
---
I
S
V
P
I
D
T
E
K
G
-
F
F
S
-----
L
Q
N
L
Q
----
E
C
L
E
L
--------------
S
-
K
D
V
D
V
V
A
----
I
G
P
G
L
G
N
N
------
E
H
V
R
-----
E
F
-
V
N
E
F
L
K
T
-------
L
E
K
-
P
A
-----
V
I
D
A
D
A
I
N
V
--
L
D
T
S
V
L
K
E
R
K
S
P
A
V
L
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
51.10
29%
-32
- C8 -
3RSF
-
NNR_THEMA
A:
[277-330]
----------------
L
A
V
P
F
P
Q
N
--------
L
I
A
T
S
R
F
P
E
L
---
I
S
V
P
I
D
T
E
K
G
-
F
F
S
-----
L
Q
N
L
Q
----
E
C
L
E
L
--------------
S
-
K
D
V
D
V
V
A
----
I
G
P
G
L
G
N
N
------
E
H
V
R
-----
E
F
-
V
N
E
F
L
K
T
-------
L
E
K
-
P
A
-----
V
I
D
A
D
A
I
N
V
--
L
D
T
S
V
L
K
E
R
K
S
P
A
V
L
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
51.06
29%
-42
- C8 -
3RT7
-
NNR_THEMA
A:
[277-330]
----------------
L
A
V
P
F
P
Q
N
--------
L
I
A
T
S
R
F
P
E
L
---
I
S
V
P
I
D
T
E
K
G
-
F
F
S
-----
L
Q
N
L
Q
----
E
C
L
E
L
--------------
S
-
K
D
V
D
V
V
A
----
I
G
P
G
L
G
N
N
------
E
H
V
R
-----
E
F
-
V
N
E
F
L
K
T
-------
L
E
K
-
P
A
-----
V
I
D
A
D
A
I
N
V
--
L
D
T
S
V
L
K
E
R
K
S
P
A
V
L
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
50.79
29%
-38
- C8 -
3RT9
1
NNR_THEMA
A:
[277-330]
----------------
L
A
V
P
F
P
Q
N
--------
L
I
A
T
S
R
F
P
E
L
---
I
S
V
P
I
D
T
E
K
G
-
F
F
S
-----
L
Q
N
L
Q
----
E
C
L
E
L
--------------
S
-
K
D
V
D
V
V
A
----
I
G
P
G
L
G
N
N
------
E
H
V
R
-----
E
F
-
V
N
E
F
L
K
T
-------
L
E
K
-
P
A
-----
V
I
D
A
D
A
I
N
V
--
L
D
T
S
V
L
K
E
R
K
S
P
A
V
L
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
50.78
36%
-71
- C10 -
3ZDS
-
HGD_PSEPK
A:
[169-206]
-------------------------------------------------------------------------------------------------------------------------
M
E
-----
V
E
-
P
L
E
I
A
V
I
-------
P
R
G
-
M
K
-----
F
R
V
E
L
L
D
G
Q
--
A
R
G
Y
I
A
E
N
H
G
A
P
L
R
L
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
50.39
29%
-37
- C8 -
3RTC
-
NNR_THEMA
A:
[277-330]
----------------
L
A
V
P
F
P
Q
N
--------
L
I
A
T
S
R
F
P
E
L
---
I
S
V
P
I
D
T
E
K
G
-
F
F
S
-----
L
Q
N
L
Q
----
E
C
L
E
L
--------------
S
-
K
D
V
D
V
V
A
----
I
G
P
G
L
G
N
N
------
E
H
V
R
-----
E
F
-
V
N
E
F
L
K
T
-------
L
E
K
-
P
A
-----
V
I
D
A
D
A
I
N
V
--
L
D
T
S
V
L
K
E
R
K
S
P
A
V
L
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
50.37
29%
-38
- C8 -
3RTG
-
NNR_THEMA
A:
[277-330]
----------------
L
A
V
P
F
P
Q
N
--------
L
I
A
T
S
R
F
P
E
L
---
I
S
V
P
I
D
T
E
K
G
-
F
F
S
-----
L
Q
N
L
Q
----
E
C
L
E
L
--------------
S
-
K
D
V
D
V
V
A
----
I
G
P
G
L
G
N
N
------
E
H
V
R
-----
E
F
-
V
N
E
F
L
K
T
-------
L
E
K
-
P
A
-----
V
I
D
A
D
A
I
N
V
--
L
D
T
S
V
L
K
E
R
K
S
P
A
V
L
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
50.08
29%
-37
- C8 -
3RTE
-
NNR_THEMA
A:
[277-330]
----------------
L
A
V
P
F
P
Q
N
--------
L
I
A
T
S
R
F
P
E
L
---
I
S
V
P
I
D
T
E
K
G
-
F
F
S
-----
L
Q
N
L
Q
----
E
C
L
E
L
--------------
S
-
K
D
V
D
V
V
A
----
I
G
P
G
L
G
N
N
------
E
H
V
R
-----
E
F
-
V
N
E
F
L
K
T
-------
L
E
K
-
P
A
-----
V
I
D
A
D
A
I
N
V
--
L
D
T
S
V
L
K
E
R
K
S
P
A
V
L
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------