@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs0516: (2015-12-01 )
MIMSTIYFISLCMSFILSYYDIKYQEYPIFLWILFTISTIILTPITKVSIVLCLFGILAEVVDINIGSGDFLYLATIGLSLPLHQMFFIIQIGAWLGIIYCLVMRKMKKTIAFLPFLSIAYIIVTSYSLLF
Atome Classification :
(16 SA)
---------------.........10--.......-----.20-........30-....-...--.40------.-.------..----.--.-.------.50...-...---------------..60.-.-......70....-----....80.-----..--------..-----------.-----.-.90..------...--...100..------------.-------....110----........120.......130-----------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------MI
M
S
T
I
Y
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I
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L
--
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M
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-----
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YD-
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QEY
P
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-
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I
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--
T
I
I
------L-T------P
I
----
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K
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V
------
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I
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L
C
L
-
F
G
I
---------------
L
A
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-
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NIGSG
D
F
L
Y
L
A
-----TIGLSL
P
-----
L
H
--------
Q
M
-----------
F
-----
F
-
I
I
Q
I
G
------
A
W
L
--
G
I
I
Y
C
L
V
M
------------
R
-------
K
M
K
K
T
I
-----
A
F
L
P
F
L
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I
A
Y
I
I
VTSYSLLF------------
18
Fugue
80.71
17%
-234
- C7 -
2J73
1
PULA_THEMA
A:
[1-103]
----------------------
F
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E
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--
T
I
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V
H
Y
H
-----
R
Y
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-
G
K
Y
D
G
W
N
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P
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--
Q
------------------------------------------------------------
E
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-
G
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A
-----
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--------
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-----------
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-----
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------
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--
A
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D
-----------------
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-------
A
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-----
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Q
G
V
E
E
I
F
Y
EKP---------
11
Fugue
78.12
15%
-192
- C4 -
1JB3
-
AGRIN_CHICK
A:
[6-132]
------------------------------------------
E
-
L
Q
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R
E
E
E
A
N
V
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V
L
T
G
-
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--
E
I
M
------
N
-
V
DPVHH
T
Y
S
----
C
--
K
-
V
------
R
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R
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L
-
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---------------
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-----
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-----
C
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NQVSTGDT
R
I
-----------
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F
-
V
N
P
A
P
------
Q
Y
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WP
A
H
R
N
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------------
N
-------
S
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-----
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A
------------
12
Fugue
77.15
16%
-196
- C6 -
3AQB
-
HEXA_MICLU
A:
[4-138]
----------------
M
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--
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--------
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------
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----
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------
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A
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---------------
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-
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-----
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-----
F
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--------
K
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-----------
L
S
QPFY
Q
-
H
D
F
L
V
------
L
T
D
--
C
V
S
R
I
N
E
L
------------
K
-------
S
I
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A
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TD
E
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H
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I
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H
Y
M
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I
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P
Y
M
---------------
15
Fugue
76.47
12%
-212
- C6 -
1KNC
6
AHPD_MYCTU
A:
[2-175]
--------S
I
E
K
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A
A
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P
E
Y
A
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--
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-----
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A
A
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RN
P
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V
------
L
-
A
------
D
I
----
G
--
A
-
E
A
T
DHLS
A
A
A
R
H
A
-
A
L
G
---------------
A
A
A
I
M
-
G
-
M
N
N
V
F
Y
R
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R
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EGRYD
D
L
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P
G
L
R
-----
M
N
--------
I
I
A
N
PGIPK
A
N
F
E
L
-----
W
-
S
F
A
V
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------
A
I
N
--
G
C
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C
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H
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L
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V
GVD
R
E
-------
A
I
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A
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K
A
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A
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------------
14
Fugue
75.88
16%
-196
- C6 -
2R5S
4
?
A:
[6-176]
D
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------
L
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A
T
I----
P
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----
E
--
Y
-
Q
------
D
N
S
Y
K
S
-
L
I
A
---------------
K
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E
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A
A
N
P
DN
F
--
E
L
--------
A
C
-----------
E
-----
L
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A
V
Q
Y
N
Q
V
GR
D
E
E
A
L
--
E
L
L
W
N
I
L
K
------------
V
NLGAQDG
E
V
K
K
T
F
M
----
D
I
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S
A
L
G
Q
G
N
A
I
A
S
K
Y
R
R
Q
L
Y
S
I
LY-------
9
Fugue
75.16
23%
-185
* C9 *
2QUO
1
A:
[4-126]
-------KEILDLA
A
A
T
E
R
L
N
L
T
D
A
L
--
N
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N
P
A
G
N
-----
L
Y
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S
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P
W
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-
K
L
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L
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--
L
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------
T
-
A
------
T
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----
Q
--
K
-
Y
------
R
I
L
A
----------------------
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N
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N
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G
--------
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-
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A
--
G
-
Q
Y
V
L
V
M
------------
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-------
A
N
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S
Y
S
-----
G
N
Y
P
-----------
Y
S
I
L
F
Q
K
F---------
13
Fugue
70.62
15%
-231
* C7 *
2DYI
-
RIMM_THET8
A:
[1-162]
------------M
R
L
V
E
I
G
R
F
G
A
P
Y
A
--
L
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G
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F
-----
R
G
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E
R
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Y
-
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A
I
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------
D
-
L
------
Y
R
----
V
--
G
-
E
------
E
L
V
V
H
L
-
A
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V
TD
R
T
L
A
E
A
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VG
L
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A
E
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A
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-
L
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P
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A
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P
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EGRQ
V
G
--------
E
V
-----------
V
-----
D
-
I
L
D
A
G
------
A
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--
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V
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------------
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-------
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D
R
A
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R
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L
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A
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Y
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E
E
G
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I
H
V
D
PIPGLFD----
1
HHSearch
61.85
21%
-195
- C8 -
3S0X
-
FLAK_METM6
A:
[503-594]
--------------------
E
Y
I
I
G
A
--
L
G
L
I
I
A
S
-----
V
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-----
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I
-
W
I
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--
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------
A
I
Y
------
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T
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D
Y
S
I
-
L
I
N
S
---
I
S
G
F
V
I
C
F
I
L
---------------
G
Y
M
M
F
-
L
-
S
G
I
G
G
G
D
G
K
M
L
I
-----
G
L
G
A
L
V
P
-----
K
F
--------
Q
-----------------------------------------------------------------------------------------------------------
16
Fugue
59.42
11%
-176
- C9 -
3EJK
6
?
A:
[15-171]
---------------
A
I
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L
P
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A
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------
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M
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------
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A
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P
-
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C
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D
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A
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G
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-----
D
N
--------
Y
R
-----------
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-----
L
-
R
I
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P
Q
------
V
W
Y
--
G
F
A
A
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G
D
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------------
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-------
A
L
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A
N
C
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D
A
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F
I
PFSWAGADLSGT
17
Fugue
58.23
13%
-146
* C6 *
3UUN
-
DMD_HUMAN
A:
[338-453]
---------------
E
V
N
L
D
R
Y
Q
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A
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L
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A
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N
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--
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------
D
-
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------
F
H
----
T
--
H
-
E
------
G
Y
M
M
D
L
-
T
A
H
---------------
Q
G
R
V
G
-
N
-
I
L
Q
L
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K
L
I
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-----
K
L
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E
D
E
E
-----
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E
--------
V
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-----------
E
-----
Q
-
M
N
L
L
N
------
S
R
W
--
E
C
L
R
V
A
S
M
------------
E
-------
K
Q
S
N
L
H
-----
R
V
L
M
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Q
-------------------------
10
Fugue
45.58
22%
-77
- C5 -
2L35
-
TYOBP_HUMAN
A:
[1-62]
-------------------------------------------------------------------------------------------------------------------------------
C
S
T
V
-
S
-
P
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V
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V
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D
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-----
L
A
--------
V
Y
-----------
F
-----
L
G
R
L
G
T
A
------
E
V
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--
G
I
I
S
I
V
L
V
------------
A
-------
T
V
L
K
T
I
-----
V
L
I
P
F
L
E
Q
N
-----------------------
6
HHSearch
41.39
13%
-164
- C3 -
3VX8
-
ATG7_ARATH
D:
[136-158]
-----------------------------
R
F
L
V
I
S
-----
F
A
D
-
L
K
K
W
S
F
R
Y
W
F
-
A
F
P
A
-
F
V
L
--
D
P
P
------
V
-
S
------
L
I
----
E
--
L
-
K
------
P
A
S
E
Y
F
-
S
S
E
---------------
E
A
E
S
V
-
S
-
A
A
C
N
D
W
R
D
S
D
L
T
-----
T
D
V
P
F
F
L
-----
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--------
V
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-----------
S
-----
D
-
S
K
A
S
I
------
R
H
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--
K
D
L
E
A
C
Q
G
------------
D
-------
H
Q
K
L
L
F
-----
G
F
Y
D
P
C
H
L
P
S
N
P
G
W
P
L
R
N
Y
L
------------
7
HHSearch
31.84
19%
26
- C2 -
3CM1
-
?
A:
[66-81]
------------------------------------------------------------------------------------------------------------------------------------
I
-
R
E
T
G
E
G
D
V
R
I
W
P
-----
S
Q
D
G
K
E
R
-----
M
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--------
N
I
-----------
A
-----
L
-
S
S
P
F
G
------
Q
A
R
--
F
H
A
Q
V
A
P
L
------------
S
-------
E
F
L
H
R
T
-----
Y
E
L
V
P
A
G
Q
E
S
D
Y
I
D
I
D
A
E
I
A
------------
4
HHSearch
21.01
0%
96
- C8 -
2VDA
-
LAMB_ECOL6
B:
[8-23]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
R
K
L
-----
P
L
A
V
A
V
A
A
G
V
M
S
A
Q
A
M
A
---------------
8
HHSearch
20.35
18%
143
* C8 *
2PFC
1
Y098_MYCTU
A:
[105-121]
---------------------------------
W
S
-----
I
D
D
-
Y
C
Q
H
Q
L
S
S
M
L
-
I
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
5.30
30%
537
- C1 -
2RQH
-
A:
[3-12]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
F
V
P
N
V
H
A
A
E
F
V
P
S
F
L
R
G
P
A
------------