@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs0600: (2015-12-02 )
MSQEKLKSKLDQAKGGAKEGFGKITGDKELEAKGFIEKTIAKGKELADDAKDAVEGAVDAVKEKLK
Atome Classification :
(20 SA)
------------.........10........20...------.------....30...-..------...40......-----..50........60.....-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------M
S
Q
E
K
L
K
S
K
L
D
Q
AKGGAKEGFGKI------T------GDKEL
E
A
K
G
-
F
I
------
E
K
T
I
AK
G
K
E
L
A
-----
D
D
A
K
D
A
V
E
G
A
V
D
A
V
K
E
KLK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
80.79
35%
-19
- C3 -
1F4P
1
FLAV_DESVH
A:
[43-112]
--------------------------
G
G
L
F
E
G
F
D
L
V
------
L
L
G
C
S
T
W
G
D
D
S
I
E
L
Q
D
D
F
I
P
L
F
D
S
L
E
E
T
G
A
Q
G
R
K
V
A
C
F
G
C
G
D
S
S
W
E
Y
F
C
G
A
V
D
A
I
E
E
K
L
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
80.36
35%
-13
- C3 -
1XT6
1
FLAV_DESVH
A:
[43-112]
--------------------------
G
G
L
F
E
G
F
D
L
V
------
L
L
G
C
S
T
W
G
D
D
S
I
E
L
Q
D
D
F
I
P
L
F
D
S
L
E
E
T
G
A
Q
G
R
K
V
A
C
F
G
C
G
D
S
S
Y
E
Y
F
C
G
A
V
D
A
I
E
E
K
L
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
78.15
35%
-2
- C3 -
5FX2
1
FLAV_DESVH
A:
[43-112]
--------------------------
G
G
L
F
E
G
F
D
L
V
------
L
L
G
C
S
T
W
G
D
D
S
I
E
L
Q
D
D
F
I
P
L
F
D
S
L
E
E
T
G
A
Q
G
R
K
V
A
C
F
G
C
G
D
S
S
Y
E
Y
F
C
G
A
V
D
A
I
E
E
K
L
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
77.11
35%
-2
- C3 -
1J8Q
1
FLAV_DESVH
A:
[43-112]
--------------------------
G
G
L
F
E
G
F
D
L
V
------
L
L
G
C
S
T
W
G
D
D
S
I
E
L
Q
D
D
F
I
P
L
F
D
S
L
E
E
T
G
A
Q
G
R
K
V
A
C
F
G
C
G
D
S
S
Y
E
Y
F
C
G
A
V
D
A
I
E
E
K
L
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
77.06
35%
-5
- C3 -
1J9E
1
FLAV_DESVH
A:
[43-112]
--------------------------
G
G
L
F
E
G
F
D
L
V
------
L
L
G
C
S
T
W
G
D
D
S
I
E
L
Q
D
D
F
I
P
L
F
D
S
L
E
E
T
G
A
Q
G
R
K
V
A
C
F
G
C
G
D
S
S
Y
E
Y
F
C
G
A
V
D
A
I
E
E
K
L
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
76.94
35%
-7
- C3 -
4FX2
1
FLAV_DESVH
A:
[43-112]
--------------------------
G
G
L
F
E
G
F
D
L
V
------
L
L
G
C
S
T
W
G
D
D
S
I
E
L
Q
D
D
F
I
P
L
F
D
S
L
E
E
T
G
A
Q
G
R
K
V
A
C
F
G
C
G
D
S
S
Y
E
Y
F
C
G
A
V
D
A
I
E
E
K
L
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
76.72
35%
3
- C3 -
1BU5
2
FLAV_DESVH
A:
[43-112]
--------------------------
G
G
L
F
E
G
F
D
L
V
------
L
L
G
C
S
T
W
G
D
D
S
I
E
L
Q
D
D
F
I
P
L
F
D
S
L
E
E
T
G
A
Q
G
R
K
V
A
C
F
G
C
G
D
S
S
Y
E
Y
F
C
G
A
V
D
A
I
E
E
K
L
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
76.40
35%
-15
- C3 -
2FX2
1
FLAV_DESVH
A:
[43-112]
--------------------------
G
G
L
F
E
G
F
D
L
V
------
L
L
G
C
S
T
W
G
D
D
S
I
E
L
Q
D
D
F
I
P
L
F
D
S
L
E
E
T
G
A
Q
G
R
K
V
A
C
F
G
C
G
D
S
S
Y
E
Y
F
C
G
A
V
D
A
I
E
E
K
L
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
PsiBlast_CBE
76.08
35%
-6
- C3 -
1BU5
2
FLAV_DESVH
B:
[43-112]
--------------------------
G
G
L
F
E
G
F
D
L
V
------
L
LGCSTW
G
D
D
S
I
E
L
Q
D
D
F
I
PLFDSL
E
E
T
G
A
Q
G
R
K
V
A
CFGCG
D
S
S
Y
E
Y
F
C
G
A
V
D
A
I
E
E
K
L
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
74.96
35%
6
- C3 -
3FX2
1
FLAV_DESVH
A:
[43-112]
--------------------------
G
G
L
F
E
G
F
D
L
V
------
L
L
G
C
S
T
W
G
D
D
S
I
E
L
Q
D
D
F
I
P
L
F
D
S
L
E
E
T
G
A
Q
G
R
K
V
A
C
F
G
C
G
D
S
S
Y
E
Y
F
C
G
A
V
D
A
I
E
E
K
L
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
71.55
35%
7
- C3 -
1FX1
1
FLAV_DESVH
A:
[44-113]
--------------------------
G
G
L
F
E
G
F
D
L
V
L
L
G
C
S
T
W
------
G
D
D
S
I
E
L
Q
D
D
F
I
P
L
F
D
S
L
E
E
T
G
A
Q
G
R
K
V
A
C
F
GCG
D
S
S
Y
E
Y
F
C
G
A
V
D
A
I
E
E
K
L
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
68.35
29%
30
- C3 -
1YWW
-
Y4738_PSEAE
A:
[1-65]
------------
M
N
S
D
V
I
K
G
K
W
K
Q
L
T
G
K
I
K
E
R
W
G
D
L
------
T
------
D
D
D
L
Q
A
A
D
G
-
H
A
------
E
Y
L
V
G
K
L
Q
E
R
Y
-----
G
W
S
K
E
R
A
E
Q
E
V
R
D
F
S
D
R
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
63.55
16%
5
- C3 -
4UI9
-
ANC2_HUMAN
N:
[15-730]
RPGQELLVAWNT
V
S
T
E
E
L
R
A
A
V
E
V
L
R
G
H
V
L
E
E
W
F
V
E
------
V
------
L
Q
N
D
L
Q
A
N
I
-
S
P
------
E
F
W
N
A
I
S
Q
C
E
N
-----
S
A
C
L
L
L
L
L
D
A
F
G
L
L
E
S
R
L
D
PYLRSLELLEKWTRLGLLMGTGAQGLREEVHTMLRGVLFFSTPRTFQEMIQRLYGCFLRVYMQSKRKGDPELEGELDSRYARRRYYRLLQSPLWCRQALEQFHQLSQVLHRLSLLERVSAEAVTTTLHQVTRERMEDRCRGEYERSFLREFHKWIERVVGWLGKVFTLRRWRCHVQRFFYRIYASLRIEELFSIVRDFPDSRPAIEDLKYCLERTDQRQQLLVSLKAALETRLLHPGVNTCDIITLYISAIKALRVIDPSMVILEVACEPIRRYLRTREDTVRQIVAGLTDLAVELSKEPEDWVPDPVDADPGKSSSKRRSSDIISLLVSIYGSKDLFINEYRSLLADRLLHQFSFSPEREIRNVELLKLRFGEAPMHFCEVMLKDMADSRRINANIREEDEKRPAEEQPPFGVYAVILSSEFWPPFKDEKLEVPEDIRAALEAYCKKYEQLKAMRTLSWKHTLGLVTMDVELADRTLSVAVTPVQAVILLYFQDQASWTLEELSKAVKMPVALLRRRMSVWLQQGVLREEPPGTFSVIEEERPQDRDNMVLI
14
PsiBlast_PDB
62.25
41%
-31
- C3 -
1AZL
1
FLAV_DESVH
A:
[77-112]
------------------------------------------------------------
L
------
E
E
T
G
A
Q
G
R
K
V
A
C
F
G
C
G
D
S
S
Y
E
Y
F
C
G
A
V
D
A
I
E
E
K
L
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
61.62
41%
-31
- C3 -
1AKW
1
FLAV_DESVH
A:
[77-112]
------------------------------------------------------------
L
------
E
E
T
G
A
Q
G
R
K
V
A
C
F
G
C
G
D
S
S
Y
E
Y
F
C
G
A
V
D
A
I
E
E
K
L
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
61.47
26%
25
* C3 *
1RYK
-
YJBJ_ECOLI
A:
[1-65]
------------
M
N
K
D
E
A
G
G
N
W
K
Q
F
K
G
K
V
K
E
Q
W
G
K
L
------
T
------
D
D
D
M
T
I
I
E
G
-
K
R
------
D
Q
L
V
G
K
I
Q
E
R
Y
-----
G
Y
Q
K
D
Q
A
E
K
E
V
V
D
W
E
T
R
N
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
61.27
41%
-28
- C3 -
1AKR
1
FLAV_DESVH
A:
[77-112]
------------------------------------------------------------
L
------
E
E
T
G
A
Q
G
R
K
V
A
C
F
G
C
G
D
S
S
Y
E
Y
F
C
G
A
V
D
A
I
E
E
K
L
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
61.21
25%
25
- C3 -
1RYK
-
YJBJ_ECOLI
A:
[1-69]
------------
M
N
K
D
E
A
G
G
N
W
K
Q
F
K
G
K
V
K
E
Q
W
G
K
L
------
T
------
D
D
D
M
T
I
I
E
G
-
K
R
------
D
Q
L
V
G
K
I
Q
E
R
Y
-----
G
Y
Q
K
D
Q
A
E
K
E
V
V
D
W
E
T
R
N
E
YRW----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
60.87
41%
-27
- C3 -
1WSW
1
FLAV_DESVH
A:
[78-113]
------------------------------------------------------------
L
------
E
E
T
G
A
Q
G
R
K
V
A
C
F
G
C
G
D
S
S
Y
E
Y
F
C
G
A
V
D
A
I
E
E
K
L
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
59.70
41%
-28
- C3 -
1AKT
1
FLAV_DESVH
A:
[77-112]
------------------------------------------------------------
L
------
E
E
T
G
A
Q
G
R
K
V
A
C
F
G
C
G
D
S
S
Y
E
Y
F
C
G
A
V
D
A
I
E
E
K
L
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------