@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs0750: (2015-12-02 )
MIRFLILAGYFELSMYLKLSGKLNQYINTHYTYLAYISMVLSFILAIVQLIIWVKNMKMHSHLHGKIAKSTSPMILVFPVLVGLLVPTVSLDSTTVSAKGYNFPLAAGSTGTVSQDGTRVQYLKPDTSTYFTSSAYEKEMQKELKKYKGSGTLTITTENYMEVMELIYLYPEQFMDRQIQYTGFVYNEPKHEGYQFIFRFGIIHCIADSGVYGLLTTGNQKSYPDNTWVTVRGTIKSEYNQLLQQNLPVLHIEESRQVSKPNNPYVYRVF
Atome Classification :
(20 SA)
-------------------.........--10---.........20........30........40--------.......--------.50........60........70........80........90..-......100..-----.....110....-...120.......130..-------.....140...------....150...-----....160......--.170..---.....180.......190---.----.....----.200-...---...----------.--------.-----210......--.--.------.----220---..-.......230.---------....-----..240--........250.----.----.....260...-....270
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------
M
I
R
F
L
I
L
A
G
--
Y
----
F
E
L
S
M
Y
L
K
LSG
K
L
N
Q
Y
I
N
T
H
Y
T
Y
L
A
Y
I
S
M
V
L
--------
S
F
I
L
A
I
V
--------
Q
L
I
I
W
V
KN
M
K
M
H
S
H
LHGKIAKSTS
P
M
I
L
V
F
P
V
L
V
G
L
LVPTVSLDS-
T
T
VSAKGYNFP-----LAAGSTGTVSQD-G
T
R
V
Q
Y
LKPDTS
T
Y
FT
S
S
-------
A
Y
E
K
E
M
Q
K
E
L
K
------
K
YKGS
G
T
L
T
I
-----T
T
E
N
Y
M
E
V
M
E
L
I
Y
--LY
P
E
Q
F
---
M
DR
Q
I
Q
Y
T
G
F
V
YNEPKHE---
G
----
Y
Q
F
I
F
----
R
F
G
--
I
I
H
---
C
IA----------D--------S-----G--
V
Y
G
L
L
T--T--G------N----Q-----KS-YPDN
T
W
V
T
V
R
G
---------
T
I
K
S
-----
E
Y
N
Q
---
L
L
Q
QNL
P
V
L
H
IE----E----SRQVSKPNNP
Y
-
V
Y
RVF
33
Fugue
83.95
12%
-101
- C3 -
4B3X
3
IF2_THET8
A:
[1-363]
MAKVR
I
Y
Q
L
A
K
E
L
GME
T
Q
E
L
L
E
L
L
D
Q
M
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--
V
AYKS
H
A
S
T
L
E
E
K
D
A
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A
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A
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P
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V
V
V
I
M
G
HVDHG
K
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-
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A
I
NKIDLPQ
A
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A
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AK
T
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L
L
E
M
I
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--
L
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A
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R
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N
A
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D
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---
Q
A
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A
N
M
L
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----
Q
E
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--
T
F
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VG
D
Y
V
V
----------
A
--------
G
-----
E
--
A
Y
G
R
I
R
--
A
--
M
M
D
ADGN
Q
----
R
-----
K
E
-
A
G
P
G
S
A
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Q
V
L
G
FQELPHAG
D
V
V
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W
V
PD
L
E
A
A
K
E
---
I
A
E
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R
K
E
E
R
K
A
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----
E
----
E
E
E
K
A
R
R
P
R
T
M
-
A
E
L
L
R
34
Fugue
73.41
13%
-69
- C3 -
1AUG
-
PCP_BACAM
A:
[1-210]
-------------------
M
E
K
K
V
L
L
T
G
--
F
----
D
P
F
G
---------
G
E
T
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K
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N
G
A
A
--------
E
G
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A
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I
C
V
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--
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M
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P
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-
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A
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L
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A
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-----
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E
D
--------
I
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G
P
A
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Y
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-------
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P
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R
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------
K
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G
I
P
A
A
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Y
-----
T
A
G
T
F
-------------------
V
C
N
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M
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---
H
----
I
--------
R
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--
F
I
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---
I
P
Y
----------
I
--------
P
-----
E
--
Q
T
L
Q
K
-------------------------
S
-
A
P
S
L
S
L
D
H
I
T
K
---------
A
L
K
I
-----
A
A
V
T
---
A
A
V
H
E
-----------------
D
D
I
E
T
G
----------
23
HHSearch
62.90
14%
-58
- C2 -
3ULP
-
?
A:
[84-194]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
I
M
L
I
G
R
V
G
C
E
P
D
I
K
I
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N
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----
G
D
K
V
A
----
T
F
S
--
L
A
T
---
N
E
F
W
R
--------
D
RNTN
E
L
K
-
S
-----
K
T
D
W
H
R
I
V
V
--
Y
--
D
------
Q
N
---
I
V
D
L
I
-
D
K
Y
L
R
K
G
R
R
V
Y
V
Q
G
---------
S
L
H
T
-----
R
K
W
H
T--
S
Q
P
K
Q
I
T
E
I
I
L
S
Y
NK
G
D
----
L
I
F
L
D
------------
29
HHSearch
61.89
14%
-59
- C2 -
3AFP
-
SSB_MYCLE
A:
[6-108]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
I
T
I
V
G
N
L
T
A
D
P
E
L
R
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T
S
S
----
G
A
A
V
V
----
N
F
T
--
V
A
S
---
T
P
-EWK-------
D
--------
G
-----
E
--
A
L
F
L
R
C
--
N
I
W
R
------
E
----
A
A
E
N
V
-
A
E
S
L
T
R
G
A
R
V
I
V
T
G
---------
R
L
K
Q
-----
R
S
F
E
RE-
G
E
K
R
T
V
V
E
V
E
V
D
----
E
----
I
G
P
S
L
R
Y
A
T
A
K
-
V
N
K
A
-
25
HHSearch
61.65
15%
-64
- C2 -
3EIV
-
SSB2_STRCO
A:
[6-110]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
T
V
V
G
N
L
V
D
D
P
E
L
R
F
T
P
S
----
G
A
A
V
A
----
K
F
R
--
V
A
S
---
T
P
------------D-------
G
-----
E
--
S
L
F
L
T
C
--
S
V
W
R
------
Q
A
A
E
N
V
-----
A
E
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Q
R
G
M
R
V
I
V
Q
G
---------
R
L
K
Q
-----
R
S
--------
R
T
V
Y
E
L
D
V
D
----
E
----
V
G
A
S
L
R
S
A
T
A
K
-
V
T
K
T
-
13
HHSearch
60.72
9%
-73
- C2 -
3LGJ
1
?
A:
[25-132]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
V
M
L
I
G
Y
L
G
D
D
P
E
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M
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S
----
G
A
E
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V
----
N
F
R
--
M
A
T
---
F
E
------------K-------
T
-----
E
--
W
H
S
V
V
V
--
F
--
N
------
P
----
H
F
A
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-----
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K
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--------
Y
T
T
E
I
V
L
P
QY
K
G
E
----
L
H
L
L
D
A
-----------
20
HHSearch
60.48
18%
-65
* C2 *
1WYD
-
SYDND_SULTO
A:
[12-97]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
E
Y
---
D
G
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E
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A
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W
V
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L
L
R
D
L
G
G--
K
----
K
F
I
I
L
----
R
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K
T
G
L
G
Q
---
V
V
V
----------
D
--------
K
-----
N
--
S
S
------
A
--
F
------
G
----
I
-----
S
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E
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E
S
V
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V
R
G
---------
I
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A
-----
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K
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A
---
P
R
G
---
I
E
L
H
A
E
----
E
----
I
T
L
L
S
K
A
K
A
P
L
-
P
L
D
V
S
16
HHSearch
59.74
13%
-34
- C2 -
1NNX
1
YGIW_ECOLI
A:
[36-107]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
D
T
W
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N
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I
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-----
D
----
D
L
Y
V
F
----
K
-----------------------
D
--------
A
-----
S
--
G
-
T
I
N
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--
D
--
I
------
D
----
H
KRWN-
G
V
T
V
T
P
K
D
T
V
E
I
Q
G
---------
E
V
D
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-----
D
W
N
-------
S
--
V
E
I
D
V
K
----
Q
----
I
R
K
V
-------------
11
HHSearch
57.69
7%
-45
- C2 -
2VW9
1
SSB_HELPY
A:
[4-106]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
V
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M
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N
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Y
L
P
S
----
G
S
A
A
A
----
T
I
G
--
L
A
T
---
S
R
R
F
K
K
QDG
T
L
G
E
E
--------
V
-----
C
--
F
I
D
A
R
L
--
F
--
G
------
R
----
T
A
E
I
A
-
N
Q
Y
L
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K
G
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S
V
L
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L
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-----
E
S
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M
D
QT
G
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N
S
R
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I
T
A
D
----
S
----
L
Q
F
M
D
K
K
S
---------
15
HHSearch
57.66
12%
-86
- C2 -
3FHW
1
PRIB_BORPA
A:
[3-100]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
L
E
L
S
A
R
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L
E
C
G
A
M
R
HTP
A
----
G
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P
A
L
----
E
L
L
--
L
V
H
---
E
S
E
V
V
--------
E
AGR-----
R
-----
V
--
E
L
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I
S
A
--
V
A
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G
------
D
L
A
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-
L
-----
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M
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R
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22
HHSearch
57.62
17%
-28
- C2 -
1TXY
-
PRIB_ECOLI
A:
[4-100]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
L
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L
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---
R
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E
--------
E
--------
A
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F
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R
Q
A
--
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C
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M
P
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N
Q
A
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C
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K
M
V
L
H
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----
Q
----
I
E
L
I
-------------
39
Fugue
57.61
9%
-83
- C1 -
1B74
1
MURI_AQUPY
A:
[1-252]
--------------------
M
K
I
G
I
F
D
-SG
V
----
G
G
L
T
V
L
K
A
I
R
N
R
Y
R
------
K
V
D
I
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Y
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G
D
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A
--------
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V
P
Y
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--------
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---
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N
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---
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T
P
A
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A
Y
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L
E
E
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------------
G
A
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V
F
A
-----
K
A
--
C
P
L
F
A
P
L
A
E
EG
L
L
E
------
G
E
I
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R
K
V
V
E
H
Y
L
K
E
F
K
G
----
K
----
I
D
T
L
I
LGCT
H
Y
P
--
L
L
K
---
K
E
I
----------
K
--------
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F
--
L
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--
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------
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----
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E
A
-
L
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N
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K
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---------
D
G
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-----
S
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E
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---
F
F
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D
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P
N
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Q
F
L
----
I
----
K
L
I
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Y
P
V
K
L
A
E
G
V
F
24
HHSearch
56.61
14%
-73
- C2 -
2FXQ
-
SSB_THEAQ
A:
[7-110]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
V
F
L
I
G
T
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T
A
R
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M
R
Y
T
P
G
----
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----
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--
L
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---
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A
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--------
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ESG
Q
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-----
W
--
Y
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--
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------
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-
G
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----------
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----
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27
HHSearch
54.68
16%
-60
- C2 -
3STB
-
?
C:
[291-368]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
C
V
M
L
G
V
V
-
Q
N
I
Q
E
G
F
V-
F
----
E
D
K
V
L
----
Q
F
T
--
L
I
T
---
D
F
E
GPSPGDP---
D
--------
K
-----
D
--
F
H
T
V
R
V
--
F
--
D
------
S
D
---
Y
S
S
R
V
-
K
E
Q
L
R
D
G
E
W
F
L
V
T
G
---------
R
L
R
M
-----
V
P
Q
Y
-----------------------------------------
19
HHSearch
53.99
14%
-64
- C2 -
3KF6
-
B:
[514-573]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
C
K
---
D
G
Q
K
L
R
F
L
G
C
V
Q
S
Y
K
N
-----
G
-------------
I
L
R
--
L
I
D
----------------
G
--------
S
-----
S
--
S
V
T
C
D
V
--
T
--
V
------
V
L---
P
-----
D
V
S
I
Q
K
H
E
W
L
N
I
V
G
---------
R
K
R
Q
-----
D
G
-------------------------------------------
9
HHSearch
53.82
16%
-82
- C2 -
3KDF
1
RFA3_HUMAN
A:
[16-76]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
A
Q
F
---
I
D
K
P
V
C
F
V
G
R
L
E
K
I
H
P
T
----
G
----
K
M
F
I
----------
L
S
D
---
G
------------
E
--------
G
-----
K
--
N
G
T
I
E
L
--
M
--
E
------
P
----
L
------
D
-
E
E
I
S
G
I
V
E
V
V
G
---------
R
V
T
A
-----
K
A
T
I
---
L
C
T
S
Y
V
Q
F
K
E
D
S
----
H
----
P
F
D
L
G
L
Y
N
E
A
V
-
K
I
I
H
D
8
HHSearch
52.71
17%
-81
- C2 -
2PI2
-
RFA3_HUMAN
E:
[38-97]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
Q
F
---
I
D
K
P
V
C
F
V
G
R
L
E
K
I
H
P
T
----
G
----
K
M
F
I
----------
L
S
D
---
G
------------
E
--------
G
-----
K
--
N
G
T
I
E
L
--
M
--
E
------
P
----
L
------
D
-
E
E
I
S
G
I
V
E
V
V
G
---------
R
V
T
A
-----
K
A
T
I
---
L
C
T
S
Y
V
Q
F
K
E
D
S
----
H
----
P
F
D
L
G
L
Y
N
E
A
V
-
K
I
I
H
D
18
HHSearch
50.82
7%
-56
- C2 -
3PGZ
-
?
A:
[28-136]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
V
I
L
I
G
N
L
G
A
D
P
E
I
R
R
L
N
S
----
G
D
Q
V
A
----
N
L
R
--
I
A
T
---
S
E
S
W
R
--------
D
R
K
------
E
-----
R
--
T
E
W
H
N
I
--
V
I
F
N
------
E
----
N
L
V
K
V
V
E
Q
Y
L
K
K
G
S
K
I
Y
I
E
G
---------
Q
L
Q
T
-----
R
K
W
Q
D
QN
G
N
D
R
Y
T
T
E
I
V
L
Q
----
K
Y
R
G
E
L
Q
M
L
D
------------
7
PsiBlast_PDB
50.23
28%
-2
- C2 -
4M43
4
?
H:
[17-89]
-------------------------------------------------------------------------------------------------------------------------------------
S
-
V
K
I
S
C
K
A
S
G
Y
T
-----
F
T
D
Y
N
M
D
W
V
K
Q
S
H
G
K
S
L
Q
W
I
G
-
D
I
S
P
Y
Y
G
S
T
-------
G
Y
S
Q
-------------
K
F
K
G
K
A
T
L
T
V
-----
D
R
S
S
S
T
A
Y
M
E
L
R
S
--
L
T
S
E
D
T
---
A
V
Y
Y
C
A
R
R
N
Y
D
G
S
W
F
A
Y
W
---
G
----
Q
G
T
L
V
----
T
V
S
--
S
A
K
---
T
T
A
----------
P
--------
S
-----
V
--
Y
P
L
A
P
V
--
C
--
G
------
D
----
T
-----
T
G
-
S
S
V
T
L
G
C
L
V
K
G
---------
Y
F
P
E
-----
P
V
T
L
---
T
W
N
S
G
S
L
S
S
G
V
H
----
T
----
F
P
A
V
L
Q
S
D
L
Y
T
-
L
S
S
S
V
12
HHSearch
48.72
9%
-47
- C2 -
3ULL
-
SSBP_HUMAN
A:
[16-124]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
H
L
L
G
R
V
G
Q
D
P
V
L
R
QVE
G
----
K
N
P
V
T
----
I
F
S
--
L
A
T
---
N
E
M
W
R
--------
S
DV
S
-----
Q
-----
K
--
T
T
W
H
R
I
S
V
F
--
R
------
P
G---
L
R
D
V
A
-
Y
Q
Y
V
K
K
G
S
R
I
Y
L
E
G
---------
K
I
D
Y
-----
G
E
Y
M
D
KN
N
V
R
R
Q
A
T
T
I
I
A
D
----
N
----
I
I
F
L
-------------