@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs0778: (2015-12-03 )
MKKYIKLFLLTVFATTLVACGQPSTSNKTTTSSTLEVGKVELVVKEDTNVLSEKVVYHKGDTVLDVLKANYKVKEKDGFITSIDGISQDETKGLYWMFKVNNKLAPKAANQIKVKKNDKIEFYQEVYKK
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........--20...---.....30......-------..40.....---..---.50.......-.--60........-----70-----.-.-.--.-.----..----.----.80-....--....90.....-----...100.-.....-.-110......----------.120.......-
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
K
K
Y
I
K
L
F
L
L
T
V
F
A
T
T
L
V
A--CGQPS---TSNKTTTSS
T
L
E
V
-------
G
K
V
E
L
V
V
KE---DT---NV
L
S
E
K
V
V
YH-K--G
D
T
V
L
D
V
L
KA-----N------
Y
-
K
-
V
--K-E----KD----G----
F
I
T
-SIDG--ISQDETK
G
L
Y
W
-----
M
F
K
VNNK-LAPKA-A-
N
Q
I
K
VKKND----------
K
I
E
F
Y
Q
E
V
YKK-
57
Fugue
85.14
19%
-38
- C6 -
4KKI
20
TCO1_HUMAN
A:
[24-434]
E
I
C
E
V
S
EENYIRL
K
P
L
L
N
T
M
I
Q
SNYNRGTSA
V
N
V
V
L
S
L
K
L
V
GIQI
Q
T
L
M
Q
K
M
I
Q
Q
I
K
Y
N
V
K
SRLSDVS
S
G
E
L
A
L
I
I
L
A
L
G
VCRN
A
E
E
N
L
I
Y
D
Y
H
L
I
D
K
L
E
N
K
F
Q
A
E
I
E
N
M
E
A
H
NGTPLTN
Y
Y
Q
L
S
L
D
V
L
A
L
C
L
F
NGNYS
T
A
E
V
V
N
H
FTPENKNYYFGSQFS
V
D
T
G
A
M
A
V
L
A
L
T
C
V
K
K
S
L
I
N
GQIKADEG
S
L
K
N
I
S
I
Y
T
K
S
L
V
E
K
I
L
S
E
KKENGLIGNTFS
T
G
E
A
M
Q
A
L
F
V
S
SDYYNENDWN
C
Q
Q
T
L
N
T
V
L
T
E
I
S
Q
GAFSN
P
N
A
A
A
Q
V
LPALMGKTFLDINKDSSCVSA
S
G
N
F
N
I
Q
S
Y
I
S
V
N
Y
S
V
R
-----------------
I
N
E
T
Y
F
T
N
V
T
V
L
N
-------
G
S
V
F
L
S
V
M
E
---
K
A
---
Q
K
M
N
D
T
I
F
---------------------
G
------
F
-
T
-
M
--
E
-
E
----
R
S
WG--
P
----
Y
I
T
-
C
I
Q
G
--
L
C
A
N
N
N
D
R
T
Y
W
-----
E
L
L
S
G
G
E
-
P
L
S
Q
G
-
A
-
G
S
Y
V
V
R
N
G
E
----------
N
L
E
V
R
W
S
K
Y
L
--
22
HHSearch
84.32
16%
-60
- C6 -
2PMV
2
IF_HUMAN
A:
[293-399]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
-------
I
T
V
I
Y
T
I
N
N
QLR
G
V
E
L
L
F
N
E
T
I
N
V
S
V
K
-
S
--
G
S
V
L
L
V
V
L
E
E
-----
A
Q
R
K
NPM
F
-
K
-
F
--
E
-
T
T
M
T
S
W
G
----
L
----
V
V
S
-
S
I
N
N
--
I
A
E
N
V
N
H
K
T
Y
W
-----
Q
F
L
S
G
V
T
-
P
L
N
E
G
-
V
-
A
D
Y
I
P
F
N
H
E
----------
H
I
T
A
N
F
T
Q
Y
---
58
Fugue
77.54
16%
-57
- C6 -
2BB6
2
TCO2_BOVIN
A:
[1-414]
-----------NICEITEVD
S
T
L
V
E
R
L
G
Q
R
L
LPWMDRLSQEQLN
P
S
I
Y
V
G
L
R
L
SSLQAGA
K
E
A
H
Y
L
H
S
L
K
L
S
Y
Q
Q
S
L
LRPASNKDDNDSEAKPS
M
G
Q
L
A
L
Y
L
L
A
L
R
A
N
CEFIGG
R
K
G
D
R
L
V
S
Q
L
K
R
F
L
E
D
E
K
R
A
I
GHNHQGHPRTS
Y
Y
Q
Y
S
L
G
I
L
A
L
C
V
H
Q
K
R
V
H
D
S
V
V
G
K
L
L
Y
A
V
E
HKPHLLQDHVS
V
D
T
M
A
M
A
G
M
A
F
S
C
L
E
L
S
NLNPKQ
R
N
R
I
N
L
A
L
K
R
V
Q
E
K
I
L
K
A
QTPEGYFGNVYS
T
P
L
A
L
Q
L
L
M
GSLRPS
V
E
L
G
T
A
C
L
K
A
K
A
A
L
Q
A
S
L
Q
H
KTFQN
P
L
M
I
S
Q
L
L
PVLN
Q
K
S
Y
V
D
L
I
S
P
D
C
Q
A
P
R
A
L
L
-----
E
P
---
A
L
E
T
P
P
Q
A
K
V
P
K
F
-------
I
D
V
L
L
K
V
S
G
---
I
S
---
P
S
Y
R
H
S
V
S
V
P
-
A
--
G
S
S
L
E
D
I
L
K
N
A
Q
E
H
G
R
------
F
-
R
-
F
--
R
-
T
----
Q
A
----
S
LS
G
P
F
L
T
-
S
V
L
G
--
R
K
A
G
E
-
R
E
F
W
Q
-----
V
L
R
D
P
D
T
-
P
L
Q
Q
G
-
I
-
A
D
Y
R
P
K
D
G
E
----------
T
I
E
L
R
L
V
G
W
---
23
HHSearch
76.83
18%
-63
- C6 -
2BB6
2
TCO2_BOVIN
A:
[318-414]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
V
L
L
K
V
S
G
---
I
S
---
P
S
Y
R
H
S
V
S
V
P
-
A
--
G
S
S
L
E
D
I
L
K
N
-----
A
Q
E
H
GR-
F
-
R
-
F
--
R
-
T
Q
A
S
L
S
G
----
P
----
F
L
T
-
S
V
L
G
--
R
K
A
--
G
E
R
E
F
W
-----
Q
V
L
R
D
P
D
T
P
L
Q
Q
G
-
I
-
A
D
Y
R
P
K
D
G
E
----------
T
I
E
L
R
L
V
G
W
---
56
Fugue
73.83
18%
-48
- C6 -
3U7Z
9
?
A:
[5-101]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
E
-------
K
H
I
T
V
T
V
I
H
---
G
D
---
Q
T
E
N
V
F
E
F
D
T
-
D
--
A
K
Y
L
G
E
V
L
E
S
-----
E
------
N
-
L
-
V
--
D
-
G
----
E
S
----
G
EYGL
F
I
T
-
T
V
D
E
--
E
T
A
D
D
S
K
Q
Q
W
W
-----
C
I
T
K
G
G
E
-
Q
V
N
T
S
-
A
-
D
Q
T
P
V
S
D
G
D
----------
A
F
E
L
T
L
K
E
G
Y
--
21
HHSearch
72.32
17%
-52
- C6 -
3U7Z
9
?
A:
[5-101]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
E
-------
K
H
I
T
V
T
V
I
H
----
G
---
D
Q
T
E
N
V
F
E
F
D
T
D
--
A
K
Y
L
G
E
V
L
E
S
-----
E
------
N
-
L
-
V
--
D
-
G
E
S
G
E
Y
G
----
L
----
F
I
T
-
T
V
D
E
--
E
T
A
D
D
S
K
Q
Q
W
W
-----
C
I
T
K
G
G
E
-
Q
V
N
T
S
-
A
-
D
Q
T
P
V
S
D
G
D
----------
A
F
E
L
T
L
K
E
G
Y
--
60
Fugue
68.94
23%
-60
- C5 -
1S12
2
?
A:
[1-94]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
K
V
T
V
T
N
S
F
F
E
V
--
T
G
H
A
P
----------
D
K
T
L
-
C
-------
A
S
V
S
L
L
T
Q
H
---
V
A
---
N
F
L
K
A
E
-----------------
K
-----
K
------
A
-
K
-
I
--
K
-
K
----
E
S
----
G
----
Y
L
K
V
K
F
E
E
--
L
E
N
C
E
V
K
V
L
A
A
-----
M
V
R
S
L
K
E
-
L
E
Q
K
F
-
P
-
S
Q
I
R
V
E
V
I
D
----------
N
G
S
---------
54
HHSearch
60.59
24%
-71
- C6 -
2KMM
-
?
A:
[428-479]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
K
R
L
P
-
Q
--
G
A
T
A
L
D
F
A
Y
S
-----
L
------
H
S
D
-
L
--
G
-
D
---------------------------------
H
C
I
-----
G
A
K
V
N
H
K
-
L
V
P
-----
L
S
Y
V
L
N
S
G
D
----------
Q
V
E
V
L
S
S
-----
59
Fugue
59.52
21%
-3
- C3 -
4G7X
-
?
A:
[3-94]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
N
--
C
D
P
--------
N
T
T
T
S
H
Q
L
L
F
-------
G
F
G
S
P
I
V
Q
---------------
S
V
L
F
-
D
--
G
-
C
M
L
D
I
E
K
D
-----
D
------
Y
-
G
-
F
--
V
-------
W
----
S
----
C
L
S
-
N
E
N
G
-----
D
Y
C
K
G
L
Y
K
-----
P
R
F
T
Q
G
V
-
S
P
N
W
P
-
M
-
C
D
L
S
G
A
S
A
E
----------
R
C
I
Y
P
Y
C
P
E
G
E
-
52
HHSearch
57.56
18%
-80
- C6 -
1TYG
-
THIS_BACSU
B:
[30-81]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
K
W
K
K
D
--
T
G
T
I
Q
D
L
L
A
S
-----
Y
------
Q
-
L
----
E
----------------------------------
N
K
I
V
-----
I
V
E
R
N
K
E
-
I
I
G
K
E
-
R
Y
H
E
V
E
L
C
D
R
D
----------
V
I
E
I
V
H
F
V
G
G
--
48
HHSearch
57.56
22%
-81
- C6 -
2K5P
-
?
A:
[10-63]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
T
V
D
-
G
AE
S
L
N
V
T
E
L
L
S
A
-----
L
------
K
---
V
--
A
---------------------------------
Q
A
E
Y
V
-----
T
V
E
L
N
G
E
-
V
L
E
R
E
A
F
-
D
A
T
T
V
K
D
G
D
----------
A
V
E
F
L
Y
F
M
G
G
G
-
27
HHSearch
56.24
11%
-58
- C6 -
1VJK
-
?
A:
[22-84]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
I
E
L
P
-
E
--
G
A
R
V
R
D
L
I
E
E
-----
I
------
K
K
R
-
H
--
E
-
K
----
F
K
----
E
----
E
V
F
-
G
E
G
Y
-------
D
E
D
A
D
V
-----
N
I
A
V
N
G
R
-
Y
V
S
W
-----
D
E
E
L
K
D
G
D
----------
V
V
G
V
F
P
P
V
S
---
53
HHSearch
54.07
15%
-19
- C6 -
2QJL
2
URM1_YEAST
A:
[30-93]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
--
P
V
T
V
G
D
L
I
D
H
-----
I
------
V
-
S
T
M
IN
N
P
N
----
D
V
----
S
---------
I
F
I
--
E
--
D
D
S
I
R
P
G
I
-----
I
T
L
I
N
D
T
-
D
W
E
L
E
-
G
E
K
D
Y
I
L
E
D
G
D
----------
I
I
S
F
T
S
T
L
H
G
G
-
16
PsiBlast_PDB
52.88
38%
-81
- C5 -
2BZZ
2
RNAS2_HUMAN
A:
[44-82]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
L
T
T
F
A
N
V
V
N
V
--
C
G
N
P
N
M
T
C
P
S
N
K
T
R
K
N
C
H
H
S
G
-------
S
Q
V
P
L
I
H
C
N
---
L
T
---
T
P
S
P
Q
N
I
S
N
C
-
R
--
Y
A
Q
T
P
A
N
M
F
Y
-----
I
------
V
-
A
-
C
--
D
-
N
----
R
D
----
Q
----
R
R
D
-
P
P
Q
Y
--
P
V
V
P
V
H
L
D
R
I
I
----------------------------------------------------
63
Fugue
52.86
22%
8
- C2 -
4B8V
3
?
A:
[36-224]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGSTSNIK
Y
T
V
V
KGDT
L
T
S
I
A
K
K
F
KSG
I
C
N
I
V
S
V
N
K
L
A
N
P
N
L
I
E
L
G
A
T
L
I
I
P
EN
C
S
N
P
D
---
N
K
S
C
V
S
T
P
A
E
P
T
E
TCVPGLP
G
S
Y
T
I
V
S
G
D
---
T
L
---
T
N
I
S
Q
D
F
-------
N
I
T
L
D
S
L
I
A
A
-----
N
------
T
-
Q
-
I
--
E
-
N
----
P
D
AIDV
G
----
Q
I
I
-
T
V
P
V
CP
S
S
Q
C
E
A
V
G
T
Y
N
I
V
AGD
L
F
V
D
L
A
A
-
T
Y
H
T
T
-
I
-
G
Q
I
K
A
L
N
N
N
VNPSKLKVG
Q
Q
I
I
L
P
Q
D
C
K
N
V
T
11
PsiBlast_PDB
52.83
38%
-80
- C5 -
1HI2
-
RNAS2_HUMAN
A:
[44-82]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
L
T
T
F
A
N
V
V
N
V
--
C
G
N
P
N
M
T
C
P
S
N
K
T
R
K
N
C
H
H
S
G
-------
S
Q
V
P
L
I
H
C
N
---
L
T
---
T
P
S
P
Q
N
I
S
N
C
-
R
--
Y
A
Q
T
P
A
N
M
F
Y
-----
I
------
V
-
A
-
C
--
D
-
N
----
R
D
----
Q
----
R
R
D
-
P
P
Q
Y
--
P
V
V
P
V
H
L
D
R
I
I
----------------------------------------------------
19
PsiBlast_PDB
52.35
38%
-73
- C5 -
2C05
2
RNAS2_HUMAN
A:
[44-82]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
L
T
T
F
A
N
V
V
N
V
--
C
G
N
P
N
M
T
C
P
S
N
K
T
R
K
N
C
H
H
S
G
-------
S
Q
V
P
L
I
H
C
N
---
L
T
---
T
P
S
P
Q
N
I
S
N
C
-
R
--
Y
A
Q
T
P
A
N
M
F
Y
-----
I
------
V
-
A
-
C
--
D
-
N
----
R
D
----
Q
----
R
R
D
-
P
P
Q
Y
--
P
V
V
P
V
H
L
D
R
I
I
----------------------------------------------------
18
PsiBlast_PDB
52.33
38%
-77
- C5 -
2C02
2
RNAS2_HUMAN
A:
[44-82]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
L
T
T
F
A
N
V
V
N
V
--
C
G
N
P
N
M
T
C
P
S
N
K
T
R
K
N
C
H
H
S
G
-------
S
Q
V
P
L
I
H
C
N
---
L
T
---
T
P
S
P
Q
N
I
S
N
C
-
R
--
Y
A
Q
T
P
A
N
M
F
Y
-----
I
------
V
-
A
-
C
--
D
-
N
----
R
D
----
Q
----
R
R
D
-
P
P
Q
Y
--
P
V
V
P
V
H
L
D
R
I
I
----------------------------------------------------
17
PsiBlast_PDB
51.74
38%
-74
- C5 -
2C01
2
RNAS2_HUMAN
X:
[44-82]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
L
T
T
F
A
N
V
V
N
V
--
C
G
N
P
N
MTC
P
S
N
K
T
R
K
N
C
H
H
S
G
-------
S
Q
V
P
L
I
H
C
N
---
L
T
---
T
P
S
P
Q
N
I
S
N
C
-
R
--
Y
A
Q
T
P
A
N
M
F
Y
-----
I
------
V
-
A
-
C
--
D
-
N
----
R
D
----
Q
----
R
R
D
-
P
P
Q
Y
--
P
V
V
P
V
H
L
D
R
I
I
----------------------------------------------------
13
PsiBlast_PDB
51.54
38%
-79
- C5 -
1HI4
1
RNAS2_HUMAN
A:
[44-82]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
L
T
T
F
A
N
V
V
N
V
--
C
G
N
P
N
MTC
P
S
N
K
T
R
K
N
C
H
H
S
G
-------
S
Q
V
P
L
I
H
C
N
---
L
T
---
T
P
S
P
Q
N
I
S
N
C
-
R
--
Y
A
Q
T
P
A
N
M
F
Y
-----
I
------
V
-
A
-
C
--
D
-
N
----
R
D
----
Q
----
R
R
D
-
P
P
Q
Y
--
P
V
V
P
V
H
L
D
R
I
I
----------------------------------------------------