@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs0809: (2015-12-03 )
MIIKRVLNHNAVISVTHQGLDVLLMGKGIAFKKRIGDRINSDAIEKSFVLKNSDNMNRFTELFITVPEEVVACSERIINLGKIKLGKNLDEILYINLTDHIHSAIERHEQGMVIQNPLRLEIQRYYPDEYSIGMKALELIKDELGICLTIDESAFIAMHFVNAGLDNPFNEAHKITEIVSYIEQKVKIDFRTELDESSIDYYRFMTHTKLFAQRVLSGMKYEDDDADLLLVVKKKYPREYKCVKEIGNNMAIQYQYQLNSSELLYLTVHVKRLVKNLKEISDD
Atome Classification :
(20 SA)
--.........10..-......20.....-------...30........40........50---........60....--....70........80------.........90....-.-------...100.......110--.........120.......130.......140...----....150---........------.160-....-...170......-.180.......190.......200.......-------210-.......220------......--..230.....--------..240.......250---------------........260.......270.......280.--------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--
M
I
I
K
R
VLNHN
A
V
I
-
S
V
THQG
L
D
V
L
L
MG-------KG
I
A
F
K
K
R
IGDRI
N
S
D
A
IE
K
S
F
V
LK---NSDN
M
N
R
F
T
E
L
F
I
T--V
P
E
E
V
V
A
C
S
E
R
I
I
NL-------G
K
I
KLGKNLD
E
I
L
Y
I
-N-------
L
T
D
H
I
H
S
A
I
E
R
H
EQ----G
M
V
IQNP
L
R
L
E
I
Q
RYYPDEY
S
I
G
M
K
A
L
E
L
I
K
D
EL
G
----
I
C
L
T
I-----DE
S
A
F
I
A
M
------
H
F
V
N
-AGLD-NP
F
N
E
A
H
K
I
T
E
I
-
V
S
Y
I
E
Q
K
V
K
I
D
F
R
TELDESSI
D
Y
Y
R
F
M
T
H
T
K
-------
L
F
A
-
Q
R
V
L
SGMKY-------EDDDA
D
--
L
L
L
V
V
K
K
KYP--------
R
E
Y
K
C
V
K
E
IGNN
M
A
----------------
I
Q
Y
Q
Y
QLNSS
E
L
L
Y
L
T
V
H
V
K
R
L
V
K
N
L
K
E
ISDD--------------
28
Fugue
96.62
43%
-102
- C5 -
1H99
-
LICT_BACSU
A:
[54-275]
------------------------------------------------------------------
G
A
M
E
K
F
K
T
L
L
Y
D
--
I
P
I
E
C
M
E
V
S
E
E
I
I
S
Y
-------
A
K
L
Q
L
G
K
K
L
N
D
S
I
Y
V
-
S
-------
L
T
D
H
I
N
F
A
I
Q
R
N
Q
K
----
G
L
D
I
K
N
A
L
L
W
E
T
K
R
L
Y
K
D
E
F
A
I
G
K
E
A
L
V
M
V
K
N
K
T
G
----
V
S
L
P
E
-----
D
E
A
G
F
I
A
L
------
H
I
V
N
-
A
E
L
N
-
E
E
M
P
N
I
I
N
I
T
K
V
-
M
E
E
I
L
S
I
V
K
Y
H
F
K
I
E
F
N
E
E
S
L
H
Y
Y
R
F
V
T
D
L
K
-------
F
F
A
-
Q
R
L
F
N
G
T
H
M
-------
E
D
D
--
F
--
L
L
D
T
V
K
E
K
Y
H
--------
R
A
Y
E
C
T
K
K
I
Q
T
Y
I
E
----------------
R
E
Y
E
H
K
L
T
S
D
E
L
L
Y
L
T
I
D
I
E
R
V
V
K
----------------------
2
PsiBlast_PDB
94.11
42%
-106
- C5 -
1H99
-
LICT_BACSU
A:
[56-275]
--------------------------------------------------------------------
M
E
K
F
K
T
L
L
Y
D
--
I
P
I
E
C
M
E
V
S
E
E
I
I
S
Y
-------
A
K
L
Q
L
G
K
K
L
N
D
S
I
Y
V
-
S
-------
L
T
D
H
I
N
F
A
I
Q
R
N
Q
K
----
G
L
D
I
K
N
A
L
L
W
E
T
K
R
L
Y
K
D
E
F
A
I
G
K
E
A
L
V
M
V
K
N
K
T
G
----
V
S
L
P
E
-----
D
E
A
G
F
I
A
L
------
H
I
V
N
-
A
E
L
N
-
E
E
M
P
N
I
I
N
I
T
K
V
-
M
E
E
I
L
S
I
V
K
Y
H
F
K
I
E
F
N
E
E
S
L
H
Y
Y
R
F
V
T
D
L
K
-------
F
F
A
-
Q
R
L
F
N
G
T
H
M
---------
E
D
D
F
--
L
L
D
T
V
K
E
K
Y
H
--------
R
A
Y
E
C
T
K
K
I
Q
T
Y
I
E
----------------
R
E
Y
E
H
K
L
T
S
D
E
L
L
Y
L
T
I
D
I
E
R
V
V
K
----------------------
18
HHSearch
93.19
43%
-103
- C5 -
1H99
-
LICT_BACSU
A:
[64-275]
----------------------------------------------------------------------------
Y
D
--
I
P
I
E
C
M
E
V
S
E
E
I
I
S
Y
-------
A
K
L
Q
L
G
K
K
L
N
D
S
I
Y
V
-
S
-------
L
T
D
H
I
N
F
A
I
Q
R
N
Q
K
----
G
L
D
I
K
N
A
L
L
W
E
T
K
R
L
Y
K
D
E
F
A
I
G
K
E
A
L
V
M
V
K
N
K
T
G
----
V
S
L
P
E
-----
D
E
A
G
F
I
A
L
------
H
I
V
N
-
A
E
L
N
E
E
M
-
P
N
I
I
N
I
T
K
V
-
M
E
E
I
L
S
I
V
K
Y
H
F
K
I
E
F
N
E
E
S
L
H
Y
Y
R
F
V
T
D
L
K
-------
F
F
A
-
Q
R
L
F
N
G
T
H
M
---------
E
D
D
F
--
L
L
D
T
V
K
E
K
Y
H
--------
R
A
Y
E
C
T
K
K
I
Q
T
Y
I
E
----------------
R
E
Y
E
H
K
L
T
S
D
E
L
L
Y
L
T
I
D
I
E
R
V
V
K
----------------------
17
HHSearch
80.43
37%
-88
- C5 -
3RIO
6
GLCT_BACSU
A:
[15-178]
--
F
T
V
K
K
V
L
N
N
N
V
L
I
-
A
S
H
H
K
Y
S
E
V
V
L
I
G
-------
K
G
I
G
F
G
K
K
Q
D
D
V
I
E
D
K
G
Y
D
K
M
F
I
L
K
---
D
E
K
E
Q
K
Q
F
K
K
L
L
D
Y
--
V
D
E
K
L
V
D
I
S
N
D
V
I
Y
H
-------
I
S
N
R
T
N
H
S
L
N
E
H
I
H
I
-
A
-------
L
T
D
H
I
A
F
A
I
K
R
Q
Q
Q
----
G
F
D
M
K
N
P
F
L
M
E
T
Q
S
L
Y
P
E
E
Y
Q
I
A
K
E
V
I
D
M
I
N
E
K
A
G
----
L
C
L
P
E
-----
G
E
I
G
F
I
A
L
------
H
I
H
S
-
A
L
T
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
78.64
37%
-88
- C5 -
3RIO
6
GLCT_BACSU
A:
[17-177]
----
V
K
K
V
L
N
N
N
V
L
I
-
A
S
H
H
K
Y
S
E
V
V
L
I
G
-------
K
G
I
G
F
G
K
K
Q
D
D
V
I
E
D
K
G
Y
D
K
M
F
I
L
K
---
D
E
K
E
Q
K
Q
F
K
K
L
L
D
Y
--
V
D
E
K
L
V
D
I
S
N
D
V
I
Y
H
-------
I
S
N
R
T
N
H
S
L
N
E
H
I
H
I
-
A
-------
L
T
D
H
I
A
F
A
I
K
R
Q
Q
Q
----
G
F
D
M
K
N
P
F
L
M
E
T
Q
S
L
Y
P
E
E
Y
Q
I
A
K
E
V
I
D
M
I
N
E
K
A
G
----
L
C
L
P
E
-----
G
E
I
G
F
I
A
L
------
H
I
H
S
-
A
L
T
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
76.06
43%
-1
- C5 -
1TLV
-
LICT_BACSU
A:
[56-274]
--------------------------------------------------------------------
M
E
K
F
K
T
L
L
Y
D
--
I
P
I
E
C
M
E
V
S
E
E
I
I
S
Y
-------
A
K
L
Q
L
G
K
K
L
N
D
S
I
Y
V
-
S
-------
L
T
D
H
I
N
F
A
I
Q
R
N
Q
K
----
G
L
D
I
K
N
A
L
L
W
E
T
K
R
L
Y
K
D
E
F
A
I
G
K
E
A
L
V
M
V
K
N
K
T
G
----
V
S
L
P
E
-----
D
E
A
G
F
I
A
L
------
H
I
V
N
-
A
E
L
N
-
E
E
M
P
N
I
I
N
I
T
K
V
-
M
Q
E
I
L
S
I
V
K
Y
H
F
K
I
E
F
N
--
S
L
H
Y
Y
R
F
V
T
H
L
K
-------
F
F
A
-
Q
R
L
F
N
G
T
H
M
-----------------------
Y
H
--------
R
A
Y
E
C
T
K
K
I
Q
T
Y
I
E
----------------
R
E
Y
E
H
K
L
T
S
D
E
L
L
Y
L
T
I
H
I
E
R
V
V
-----------------------
35
Fugue
62.06
18%
-34
* C6 *
4R33
5
?
A:
[35-418]
G
D
F
V
L
P
E
L
E
D
V
R
A
E
A
A
T
V
D
T
R
A
V
L
A
L
A
E
G
EEPAES
R
A
A
V
A
L
A
L
W
E
D
R
S
I
G
T
A
E
L
Q
A
A
A
E
A
R
C
GA
R
R
P
R
L
H
T
F
V
P
L
Y
T
T
NY
C
D
S
E
C
K
M
C
S
M
R
K
G
N
H
RLD
R
K
F
S
G
R
K
E
I
T
E
Q
L
E
I
L
Y
H
H
-
E
GVR
G
V
G
F
L
T
G
E
Y
E
D
K
H
T
R
L
A
S
A
F
R
I
G
W
A
I
R
T
A
L
D
L
G
F
E
R
V
Y
F
N
I
G
S
M
E
Q
D
E
I
D
V
L
G
E
W
I
G
REDP
V
T
M
C
V
F
QESY
D
R
E
T
Y
R
R
F
MGKTSV
G
V
P
K
-
A
D
F
D
-
R
R
V
V
S
F
D
R
W
L
D
A
G
Y
R
Y
V
N
P
G
V
L
V
G
L
H
D
D
L
S
A
E
L
V
S
L
V
A
H
G
D
H
L
R
S
R
G
A
T
A
D
L
S
V
-
P
R
M
R
P
A
M
K
S
R
D
T
T
R
V
G
D
D
D
Y
L
R
--
L
M
S
V
V
A
F
T
C
P
E
Q
R
L
V
L
T
T
R
E
P
Q
E
F
Q
D
V
A
L
G
L
A
G
V
I
S
P
G
S
PDVAPYRAG
C
E
A
R
N
D
E
K
S
S
Q
F
L
V
A
D
L
R
R
P
R
H
I
L
G
R
I
E
A
S
G
T
P
V
D
HFVNPAGEASR
21
HHSearch
56.44
17%
-67
- C5 -
3RIO
5
GLCT_BACSU
A:
[82-179]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
L
V
D
I
-
S
N
D
V
I
Y
H
I
S
N
R
T
N
H
S
L
N
E
H
--
I
H
I
A
L
T
D
H
I
A
-------
F
A
I
-
K
R
Q
Q
Q
G
F
D
M
----------
K
N
P
--
F
L
M
E
T
Q
S
L
Y
P
--------
E
E
Y
Q
I
A
K
E
V
I
D
M
I
N
----------------
E
K
A
G
L
C
L
P
E
G
E
I
G
F
I
A
L
H
I
H
S
A
L
T
N
---------------------
27
HHSearch
52.75
21%
-80
- C5 -
1H99
-
LICT_BACSU
A:
[69-165]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
C
M
E
V
-
S
E
E
I
I
S
Y
A
K
L
Q
L
G
K
K
L
N
D
S
--
I
Y
V
S
L
T
D
H
I
N
-------
F
A
I
-
Q
R
N
Q
K
G
L
D
I
----------
K
N
A
--
L
L
W
E
T
K
R
L
Y
K
--------
D
E
F
A
I
G
K
E
A
L
V
M
V
K
----------------
N
K
T
G
V
S
L
P
E
D
E
A
G
F
I
A
L
H
I
V
N
A
E
L
N
E
E
M
P
N
I
I
--------------
30
Fugue
52.41
43%
-92
- C5 -
1AUU
-
SACY_BACSU
A:
[1-55]
--
M
K
I
K
R
I
L
N
H
N
A
I
V
--
V
K
D
Q
N
E
E
K
I
L
L
G
-------
A
G
I
A
F
N
K
K
K
N
D
I
V
D
P
S
K
I
E
K
T
F
I
R
K
---
D
T
P
D
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
52.40
42%
-81
- C5 -
1L1C
-
LICT_BACSU
A:
[1-54]
--
M
K
I
A
K
V
I
N
N
N
V
I
S
-
V
V
N
E
Q
G
K
E
L
V
V
M
G
-------
R
G
L
A
F
Q
K
K
S
G
D
D
V
D
E
A
R
I
E
K
V
F
T
L
D
---
N
K
D
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
51.92
45%
-90
- C5 -
1AUU
-
SACY_BACSU
A:
[1-52]
--
M
K
I
K
R
I
L
N
H
N
A
I
V
--
V
K
D
Q
N
E
E
K
I
L
L
G
-------
A
G
I
A
F
N
K
K
K
N
D
I
V
D
P
S
K
I
E
K
T
F
I
R
K
---
D
T
P
D
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
51.67
41%
-77
- C5 -
1L1C
-
LICT_BACSU
A:
[1-51]
--
M
K
I
A
K
V
I
N
N
N
V
I
S
-
V
V
N
E
Q
G
K
E
L
V
V
M
G
-------
R
G
L
A
F
Q
K
K
S
G
D
D
V
D
E
A
R
I
E
K
V
F
T
L
D
---
N
K
D
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
50.65
45%
-58
- C5 -
1AUU
-
SACY_BACSU
A:
[1-51]
--
M
K
I
K
R
I
L
N
H
N
A
I
V
-
V
K
D
-
Q
N
E
E
K
I
L
L
G
-------
A
G
I
A
F
N
K
K
K
N
D
I
V
D
P
S
K
I
E
K
T
F
I
R
K
---
D
T
P
D
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
50.39
40%
-62
- C5 -
1AUU
-
SACY_BACSU
A:
[1-55]
--
M
K
I
K
R
I
L
N
H
N
A
I
V
-
V
K
D
Q
N
-
E
E
K
I
L
L
G
-------
A
G
I
A
F
N
K
K
K
N
D
I
V
D
P
S
K
I
E
K
T
F
I
R
K
---
D
T
P
D
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
50.12
18%
-51
- C5 -
3UFE
4
GLCT_BACSU
A:
[3-106]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-
R
P
L
S
E
V
N
Q
H
S
Q
L
-
M
A
Q
L
V
E
V
I
E
D
S
F
Q
M
K
V
N
K
E
S
V
N
Y
L
R
L
I
R
H
I
R
-------
F
T
I
-
E
R
I
K
K
E
E
P
T
-------
K
E
P
E
-
K
--
L
M
L
L
L
K
N
E
Y
P
--------
L
C
Y
N
T
A
W
K
L
I
K
I
L
Q
----------------
Q
T
L
K
K
P
V
H
E
A
E
A
V
Y
L
T
L
H
L
I
P
I
N
Q
----------------------
22
HHSearch
50.00
17%
-59
- C5 -
3UFE
5
GLCT_BACSU
A:
[9-110]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
N
Q
H
S
Q
L
-
M
A
Q
L
V
E
V
I
E
D
S
F
Q
M
K
V
N
K
E
S
V
N
Y
L
R
L
I
R
H
I
R
-------
F
T
I
-
E
R
I
K
K
E
E
P
T
----------
K
E
P
E
K
L
M
L
L
L
K
N
E
Y
P
--------
L
C
Y
N
T
A
W
K
L
I
K
I
L
Q
----------------
Q
T
L
K
K
P
V
H
E
A
E
A
V
Y
L
T
L
H
L
I
P
I
N
Q
----------------------
6
PsiBlast_PDB
47.63
18%
-53
- C5 -
3GWH
2
GLCT_BACSU
A:
[12-106]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
S
Q
L
-
M
A
Q
L
V
E
V
I
E
D
S
F
Q
M
K
V
N
K
E
S
V
N
Y
L
R
L
I
R
H
I
R
-------
F
T
I
-
E
R
I
K
K
E
E
P
T
-------
K
E
P
E
-
K
--
L
M
L
L
L
K
N
E
Y
P
--------
L
C
Y
N
T
A
W
K
L
I
K
I
L
Q
----------------
Q
T
L
K
K
P
V
H
E
A
E
A
V
Y
L
T
L
H
L
I
P
I
------------------------
37
Fugue
47.60
12%
-12
- C6 -
2VQ2
6
?
A:
[4-223]
---------
A
N
Q
V
S
N
-
I
K
T
Q
L
A
M
E
Y
M
R
G
Q
-------
D
Y
R
Q
A
T
A
S
I
E
D
A
L
K
S
D
P
K
N
E
L
A
W
L
V
---
R
A
E
I
Y
Q
Y
-----
L
K
--
V
N
D
K
A
Q
E
S
F
R
Q
A
L
S
I
-------
K
P
D
S
A
E
I
N
N
N
Y
G
W
F
L
C
G
-------
R
L
N
R
P
A
E
S
M
A
Y
F
D
K
----
A
L
--
A
D
P
-------
T
Y
P
T
--------
P
Y
I
A
N
L
N
K
G
----
I
C
S
A
K
-----
Q
G
Q
F
G
L
A
E
------
A
Y
L
K
-
R
S
L
A
-
A
Q
P
Q
F
----------------------------
P
P
A
F
K
E
L
A
R
T
K
-------
M
L
A
G
Q
L
G
D
A
D
Y
Y
F
-------
K
K
Y
Q
S
R
--
V
E
V
L
Q
A
D
D
L
L
--------
L
G
W
K
I
A
K
A
L
G
N
A
Q
A
----------------
A
-
Y
E
Y
E
A
Q
L
Q
A
N
F
P
Y
S
E
E
L
Q
T
V
L
T
----------------------
10
PsiBlast_PDB
46.95
29%
-97
- C7 -
2WK7
-
CQSA_VIBCH
A:
[153-217]
----------------------------------------------------------------------------------------------------------------------
N
-------
N
C
D
H
L
R
M
L
I
Q
R
H
G
P
----
G
I
I
V
V
D
S
I
Y
S
T
L
G
T
I
A
P
------
L
A
E
L
V
N
I
S
K
E
F
G
----
C
A
L
L
V
-----
D
E
S
H
S
L
G
T
------
H
G
P
N
G
A
G
L
L
-
A
E
L
G
L
T
R
E
V
H
F
M
-
T
A
S
L
A
K
T
F
A
Y
R
A
G
A
I
W
C
N
N
E
V
N
R
C
V
P
F
I
S
Y
P
-------
A
I
F
-
S
S
T
L
L
P
Y
E
A
-------
A
G
L
E
T
T
--
L
E
I
I
E
S
A
D
N
R
--------
R
Q
H
L
D
R
M
A
R
K
L
R
I
G
----------------
L
S
Q
L
G
L
T
I
R
S
E
S
Q
I
I
G
L
E
T
G
D
E
R
N
T
E
K
V
R
D
Y
L
--------------