@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs1127: (2015-12-05 )
MTPQTLRRLDVKKQFIEKIEPFAHRQTLKSKAVNSSKTTMSIQRYNHSGTKIQLRIGYSKVLIRIFSNGKINLTHYDLFFDREETLEITDAFDNGVYTQDEVDGFIKQAKTFIKQALKGEV
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------.........10---.........20........30.---.......40.......--------------.50..---.....-.60.......---.70......---..-80.......--.-90....-------....100.--......110.......120----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------M
T
P
Q
T
L
R
R
L
D
----
V
K
K
Q
F
I
E
K
I
E
P
F
A
H
R
Q
T
L
K
S
KA---VNSSK
T
T
M
S
I
Q
RYNHS--------------G
T
K
I
Q
---
L
R
IG
Y
-
S
K
V
L
I
R
I
FSN---G
K
I
N
L
T
H
Y
D
---
L
F
-FDREE
T
L
E
I
--
T
-
D
AFDNG-------VY
T
Q
D
E
V
D
--
G
F
I
K
Q
A
K
T
F
I
K
Q
A
LKGEV-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
80.37
20%
-26
- C1 -
4P0G
9
MLTF_PSEAE
A:
[7-435]
APT
A
L
E
R
V
Q
K
E
G
V
L
R
V
I
T
R
NSPA
T
Y
F
Q
D
RN
G
E
T
G
F
E
Y
E
L
A
K
R
F
A
E
R
L
G
V
E
L
K
I
E
T
A
DN
L
D
D
L
Y
A
Q
L
S
REGGPALAAAG
L
T
P
G
REDDAS
V
R
Y
S
HTY
L
D
V
T
P
Q
I
I
Y
R
N
G
QQRP
T
R
P
E
D
L
V
G
K
R
I
M
V
L
K
G
S
S
H
A
E
Q
---
L
A
E
L
K
K
Q
Y
P
E
L
K
Y
E
E
S
--------------
D
A
V
---------
E
-
V
V
D
L
L
R
M
V
D
V
---
G
D
I
D
L
T
L
V
D
S
N
E
L
A
-
M
N
Q
V
Y
F
P
N
V
--
R
-
V
A
F
D
F
G
E
A
R
G
L
A
W
A
L
P
G
G
D
D
D
--
S
L
M
N
E
V
N
A
F
L
D
Q
A
K
K
E
G
L
L
Q
R
L
K
D
R
Y
YGHVDVLG
Y
V
G
A
Y
T
F
A
Q
H
L
Q
Q
RLPRY
E
S
H
F
K
Q
S
G
K
Q
L
DTD
W
R
L
L
A
A
I
G
Y
Q
E
SLWQPGATSKTGVRGLMMLT
N
R
T
A
Q
A
M
GVSNRLD
P
K
Q
S
I
Q
G
G
S
K
Y
F
V
Q
I
R
S
E
LPESIKE
P
D
R
S
W
F
A
L
A
A
Y
N
IG
G
A
H
L
E
D
A
R
K
M
A
E
K
E
GLNPNK
W
L
D
V
K
K
M
LPRLAQKQWYAKTRYGYAR
G
G
E
T
V
H
F
V
Q
N
V
R
R
Y
Y
D
I
L
T
W
V
T
Q
P
Q
5
PsiBlast_PDB
77.19
25%
-55
- C6 -
4TN4
3
?
A:
[69-153]
-------------------------------------------------------------------------------------------------------------------
F
I
D
K
I
E
E
L
C
Q
K
R
A
L
E
A
F
N
---
V
S
D
E
E
W
G
V
N
V
Q
P
L
S
G
S
--------------
A
A
N
V
Q
A
L
Y
A
L
V
G
V
-
K
G
K
I
M
G
M
H
L
C
---
S
G
G
H
L
T
H
G
-----
F
-
F
D
E
K
K
K
V
S
I
--
T
S
D
M
F
E
S
K
-------
L
Y
K
C
N
S
Q
G
--
Y
V
D
L
D
A
V
R
E
M
A
L
S
F
K
P
K
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
76.75
25%
-50
- C6 -
4OYT
4
?
A:
[69-153]
-------------------------------------------------------------------------------------------------------------------
F
I
D
K
I
E
E
L
C
Q
K
R
A
L
E
A
F
N
---
V
S
D
E
E
W
G
V
N
V
Q
P
L
S
G
S
--------------
A
A
N
V
Q
A
L
Y
A
L
V
G
V
-
K
G
K
I
M
G
M
H
L
C
---
S
G
G
H
L
T
H
G
-----
F
-
F
D
E
K
K
K
V
S
I
--
T
S
D
M
F
E
S
K
-------
L
Y
K
C
N
S
Q
G
--
Y
V
D
L
D
A
V
R
E
M
A
L
S
F
K
P
K
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
75.63
25%
-49
- C6 -
4PFN
2
?
A:
[69-153]
-------------------------------------------------------------------------------------------------------------------
F
I
D
K
I
E
E
L
C
Q
K
R
A
L
E
A
F
N
---
V
S
D
E
E
W
G
V
N
V
Q
P
L
S
G
S
--------------
A
A
N
V
Q
A
L
Y
A
L
V
G
V
-
K
G
K
I
M
G
M
H
L
C
---
S
G
G
H
L
T
H
G
-----
F
-
F
D
E
K
K
K
V
S
I
--
T
S
D
M
F
E
S
K
-------
L
Y
K
C
N
S
Q
G
--
Y
V
D
L
D
A
V
R
E
M
A
L
S
F
K
P
K
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
74.41
25%
-45
- C6 -
4PFF
1
?
A:
[69-153]
-------------------------------------------------------------------------------------------------------------------
F
I
D
K
I
E
E
L
C
Q
K
R
A
L
E
A
F
N
---
V
S
D
E
E
W
G
V
N
V
Q
P
L
S
G
S
--------------
A
A
N
V
Q
A
L
Y
A
L
V
G
V
-
K
G
K
I
M
G
M
H
L
C
---
S
G
G
H
L
T
H
G
-----
F
-
F
D
E
K
K
K
V
S
I
--
T
S
D
M
F
E
S
K
-------
L
Y
K
C
N
S
Q
G
--
Y
V
D
L
D
A
V
R
E
M
A
L
S
F
K
P
K
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
74.28
25%
-50
- C6 -
4TMR
2
?
A:
[69-153]
-------------------------------------------------------------------------------------------------------------------
F
I
D
K
I
E
E
L
C
Q
K
R
A
L
E
A
F
N
---
V
S
D
E
E
W
G
V
N
V
Q
P
L
S
G
S
--------------
A
A
N
V
Q
A
L
Y
A
L
V
G
V
-
K
G
K
I
M
G
M
H
L
C
---
S
G
G
H
L
T
H
G
-----
F
-
F
D
E
K
K
K
V
S
I
--
T
S
D
M
F
E
S
K
-------
L
Y
K
C
N
S
Q
G
--
Y
V
D
L
D
A
V
R
E
M
A
L
S
F
K
P
K
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
72.35
27%
-124
- C4 -
1AIS
2
TBP_PYRWO
A:
[36-68]
---------------------------------------------------------------------------------------------------------------------------------------------
S
K
Y
N
P
E
E
F
P
G
------------------
I
I
---
C
H
L
D
D
-
P
K
V
A
L
L
I
F
S
S
---
G
K
L
V
V
T
G
A
K
---
S
V
-
Q
D
I
E
R
A
V
A
K
--
L
-
A
Q
K
L
K
S
-------
I
G
V
K
F
K
R
A
--
P
Q
I
D
V
Q
N
M
V
F
S
G
D
I
G
R
E
F
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
71.94
35%
-144
- C4 -
3EIK
-
?
A:
[80-102]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
---
M
R
I
R
E
-
P
K
T
T
A
L
I
F
A
S
---
G
K
M
V
I
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
70.06
35%
-105
- C4 -
1RM1
2
TBP_YEAST
A:
[102-124]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
---
M
R
I
R
E
-
P
K
T
T
A
L
I
F
A
S
---
G
K
M
V
V
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
68.25
14%
-25
- C3 -
1GA3
-
IL13_HUMAN
A:
[1-113]
---------------------------------------------------------------------------------------------------
G
G
P
V
P
P
S
T
----
A
L
R
E
L
I
E
E
L
V
N
I
T
Q
N
Q
K
-
A
P
L
C
---
N
G
S
M
V
W
S
I
N
L
T
A
----------------------
G
---
M
Y
C
A
A
-
L
E
S
L
I
N
V
S
G
C
---
S
A
I
E
K
T
Q
R
M
---
L
S
G
F
C
P
H
K
V
S
A
G
--
Q
-
F
S
S
L
H
V
-------
R
D
T
K
I
E
V
A
--
Q
F
V
K
D
L
L
L
H
L
K
K
L
F
R
E
G
R
FN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
67.76
21%
-124
- C4 -
1MP9
-
TBP_SULAC
A:
[39-72]
--------------------------------------------------------------------------------------------------------------------------------------------
N
V
E
Y
D
P
D
Q
F
P
G
------------------
L
I
---
F
R
L
E
S
-
P
K
I
T
S
L
I
F
K
S
---
G
K
M
V
V
T
G
A
K
---
S
T
-
D
E
L
I
K
A
V
K
R
--
I
-
I
K
T
L
K
K
-------
Y
G
M
Q
L
T
G
K
--
P
K
I
Q
I
Q
N
I
V
A
S
A
N
L
H
V
I
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
67.38
32%
-123
- C4 -
1YTB
-
TBP_YEAST
A:
[102-126]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
---
M
R
I
R
E
-
P
K
T
T
A
L
I
F
A
S
---
G
K
M
V
V
T
G
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
67.04
30%
-61
- C4 -
2JU3
-
FABPL_RAT
A:
[13-67]
---------------------------------------------------------------------------------------------------------------------
E
N
F
E
P
F
M
K
A
M
G
L
P
E
D
L
---
I
Q
K
G
K
D
I
K
G
V
S
E
I
V
H
E
--------------
G
K
K
V
K
---
L
T
I
T
Y
G
S
K
V
I
H
N
E
F
T
L
---
G
E
E
C
E
L
E
T
M
---
T
G
-
E
K
V
K
A
V
V
K
M
--
E
-
G
D
N
K
M
V
-------
T
T
F
K
G
I
K
S
--
V
T
E
F
N
G
D
T
I
T
N
T
M
T
L
G
D
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
65.68
15%
-18
- C3 -
1G2Q
-
APT1_YEAST
A:
[1-178]
--------------------------------------------------------------------------------------M
P
I
A
S
Y
A
Q
E
L
K
L
A
L
H
Q
Y
P
N
F
P
----
S
E
G
I
L
F
E
D
F
L
P
I
F
R
N
P
G
L
F
Q
K
L
---
I
D
A
F
K
L
H
L
E
E
A
F
P
E
V
K
ID
Y
I
V
G
L
E
S
R
G
F
L
F
G
P
T
L
A
---
L
A
L
G
V
-
G
F
V
P
V
R
K
A
G
K
LP-
G
E
C
F
K
A
T
Y
E
---
K
E
-
Y
G
S
D
L
F
E
I
Q
--
K
-
N
A
I
P
A
G
S
N
V
----
I
I
V
D
D
I
I
A
TG
G
S
A
A
A
A
G
E
L
V
E
Q
-
L
E
A
N
L
L
E
Y
N
F
V
M
E
L
D
FLKGRSKLN
A
P
V
F
T
LL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
65.17
30%
-54
- C4 -
2JU8
2
FABPL_RAT
A:
[13-65]
---------------------------------------------------------------------------------------------------------------------
E
N
F
E
P
F
M
K
A
M
G
L
P
E
D
L
---
I
Q
K
G
K
D
I
K
G
V
S
E
I
V
H
E
--------------
G
K
K
V
K
---
L
T
I
T
Y
G
S
K
V
I
H
N
E
F
T
L
---
G
E
E
C
E
L
E
T
M
---
T
G
-
E
K
V
K
A
V
V
K
M
--
E
-
G
D
N
K
M
V
-------
T
T
F
K
G
I
K
S
--
V
T
E
F
N
G
D
T
I
T
N
T
M
T
L
G
D
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
Fugue
64.58
12%
3
- C3 -
3UUN
-
DMD_HUMAN
A:
[338-453]
-----------------------------------------------------------------------------------------------E
V
N
L
D
R
Y
Q
T
A
L
E
----
E
V
L
S
W
L
L
S
A
E
D
T
L
Q
A
Q
----
G
E
---
I
S
N
D
V
E
V
V
K
D
Q
F
H
T
H
E
--------------
G
Y
M
M
D
---
L
T
A
H
Q
-
G
R
V
G
-
N
I
L
Q
L
---
G
S
K
L
I
G
T
G
K
---
L
---
S
E
D
E
E
T
E
V
--
Q
-
E
Q
M
N
L
L
-------
N
S
R
W
E
C
L
R
--
V
A
S
M
E
K
Q
S
N
L
H
R
V
L
M
D
L
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
64.48
30%
-59
- C4 -
2JU7
-
FABPL_RAT
A:
[13-67]
---------------------------------------------------------------------------------------------------------------------
E
N
F
E
P
F
M
K
A
M
G
L
P
E
D
L
---
I
Q
K
G
K
D
I
K
G
V
S
E
I
V
H
E
--------------
G
K
K
V
K
---
L
T
I
T
Y
G
S
K
V
I
H
N
E
F
T
L
---
G
E
E
C
E
L
E
T
M
---
T
G
-
E
K
V
K
A
V
V
K
M
--
E
-
G
D
N
K
M
V
-------
T
T
F
K
G
I
K
S
--
V
T
E
F
N
G
D
T
I
T
N
T
M
T
L
G
D
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
62.82
20%
-37
- C4 -
4O66
1
SMAL1_MOUSE
A:
[10-76]
-----------------------------------------------------------------------------------------------------------------------------------------------
F
L
R
G
A
C
I
K
T
--------------
G
D
R
F
R
---
V
K
I
G
Y
-
N
Q
E
L
I
A
V
F
K
S
-----
L
P
S
R
H
Y
D
---
S
F
-
T
K
T
W
D
----------------------
F
S
M
S
D
Y
R
--
A
L
M
K
A
V
E
R
L
S
T
V
S
L
K
P
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
62.70
15%
12
- C2 -
1DWN
-
?
A:
[1-127]
--------------------------------------------------------------------------------------------------
S
K
T
I
V
L
S
V
G
----
E
A
T
R
T
L
T
E
I
Q
S
T
A
D
R
Q
I
F
E
E
K
V
GPL
V
G
R
L
R
L
T
A
S
L
R
Q
-
N
G
A
--------------
K
T
A
Y
R
---
V
N
L
K
L
-
D
Q
A
D
V
V
D
C
S
T
SVC
G
E
L
P
K
V
R
Y
T
---
Q
V
-
W
S
H
D
V
T
I
V
A
NS
T
-
E
A
S
R
K
S
-------
L
Y
D
L
T
K
S
L
--
V
A
T
S
Q
V
E
D
L
V
V
N
L
V
P
L
G
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
62.13
18%
-4
* C6 *
1YGT
-
DYLT_DROME
A:
[22-54]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
--
E
-
T
T
I
G
G
N
-------
A
Y
Q
H
D
K
V
N
--
N
W
T
G
Q
V
V
E
N
C
L
T
V
L
T
K
E
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------