@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs1368: (2015-12-07 )
MLEIYLGKNTKRNQRLLTFLDSYEIAYTCKESGDINREVLQSLFSKTSDCFDLLSPSFLRFKRQNQMTLSELMNLVLRNPDQNIRLPLVIDKDKVYPDMGVEEARVFIPRRLKVTFFRDSLFCDKEQR
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------........--.10-----...------......20........30--..--.--.....40........-50-.--..-.....60-...----.----.------....70........80...--------.....90..-......-100.......110.......120---........------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------
M
L
E
I
Y
LGK--NT------KR
N
------
Q
R
L
L
T
F
LDS
Y
E
I
A
Y
T
CKE--SG--D--I
N
R
E
V
L
Q
S
L
F
S
K
T
S
D
-
C
F
-
D
--LL-
S
P
S
F
L
R
--
F
K
R----Q----N------QM
T
L
S
E
L
M
N
L
V
LRNPDQNI--------
R
L
P
L
V
IDKD-KVYPDM-G
V
E
E
A
R
V
FIP
R
R
L
K
V
T
F
FRDS-----LFCDKEQR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
80.79
21%
-134
- C4 -
3GFK
-
SPX_BACSU
A:
[1-118]
------------------------------------------------------------------------------------------------------------------------------------
M
V
T
L
Y
T
S
P
--
S
C
------
T
S
C
------
R
K
A
R
A
W
L
E
E
H
E
I
P
F
V
E
R
N
IF
S
E
--
P
--
L
S
I
D
E
I
K
Q
I
L
R
M
T
E
D
-
G
T
-
D
E-
I
I
-
S
T
R
S
K
V
--
F
Q
K
----
L
----
N
VNVE--
S
M
P
L
Q
D
L
Y
R
L
I
N
E
H
P
G
L
-
L
--------
R
R
P
I
I
I
D
E
K
-
R
L
Q
V
G
Y
-
N
E
D
E
I
R
R
F
L
P
R
K
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
80.19
21%
-139
- C4 -
3IHQ
1
SPX_BACSU
A:
[2-116]
------------------------------------------------------------------------------------------------------------------------------------
M
V
T
L
Y
T
S
P
--
S
S
------
T
S
C
------
R
K
A
R
A
W
L
E
E
H
E
I
P
F
V
E
R
N
IF
S
E
--
P
--
L
S
I
D
E
I
K
Q
I
L
R
M
T
E
D
-
G
T
-
D
E-
I
I
-
S
T
R
S
K
V
--
F
Q
K
----
L
----
N
VNVE--
S
M
P
L
Q
D
L
Y
R
L
I
N
E
H
P
G
L
-
L
--------
R
R
P
I
I
I
D
E
K
-
R
L
Q
V
G
Y
-
N
E
D
E
I
R
R
F
L
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
Fugue
79.53
22%
-129
- C4 -
1Z3E
3
SPX_BACSU
A:
[1-119]
-----------------------------------------------------------------------------------------------------------------------------------H
M
V
T
L
Y
T
S
P
--
S
C
------
T
S
C
------
R
K
A
R
A
W
L
E
E
H
E
I
P
F
V
E
R
N
IF
S
E
--
P
--
L
S
I
D
E
I
K
Q
I
L
R
M
T
E
D
-
G
T
-
D
E-
I
I
-
S
T
R
S
K
V
--
F
Q
K
L
NVN
V
----
E
------
S
M
P
L
Q
D
L
Y
R
L
I
N
E
H
P
G
L
-
L
--------
R
R
P
I
I
I
D
E
K
-
R
L
Q
V
G
Y
-
N
E
D
E
I
R
R
F
L
P
R
K
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
77.84
21%
-132
- C4 -
3L78
-
SPX_STRMU
A:
[1-116]
------------------------------------------------------------------------------------------------------------------------------------
M
V
T
L
F
L
S
P
--
S
C
------
T
S
C
------
R
K
A
R
A
W
L
N
R
H
D
V
V
F
Q
E
H
N
IM
T
S
--
P
--
L
S
R
D
E
L
L
K
I
L
S
Y
T
E
N
-
G
T
E
D
--
I
I
-
S
T
R
S
K
V
--
F
Q
K
L
DID
V
----
D
------
E
L
S
V
S
E
L
I
N
L
I
S
K
N
P
S
L
-
L
--------
R
R
P
I
I
M
D
N
K
-
R
M
Q
I
G
F
-
N
E
D
E
I
R
A
F
L
P
R
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
77.51
21%
-131
- C4 -
1Z3E
3
SPX_BACSU
A:
[2-119]
------------------------------------------------------------------------------------------------------------------------------------
M
V
T
L
Y
T
S
P
--
S
C
------
T
S
C
------
R
K
A
R
A
W
L
E
E
H
E
I
P
F
V
E
R
N
IF
S
E
--
P
--
L
S
I
D
E
I
K
Q
I
L
R
M
T
E
D
-
G
T
-
D
E-
I
I
-
S
T
R
S
K
V
--
F
Q
K
----
L
----
N
VNVE--
S
M
P
L
Q
D
L
Y
R
L
I
N
E
H
P
G
L
-
L
--------
R
R
P
I
I
I
D
E
K
-
R
L
Q
V
G
Y
-
N
E
D
E
I
R
R
F
L
P
R
K
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
76.98
21%
-118
- C4 -
3L78
-
SPX_STRMU
A:
[1-117]
------------------------------------------------------------------------------------------------------------------------------------
M
V
T
L
F
L
S
P
--
S
C
------
T
S
C
------
R
K
A
R
A
W
L
N
R
H
D
V
V
F
Q
E
H
N
--
I
M
TS
P
--
L
S
R
D
E
L
L
K
I
L
S
Y
T
E
N
-
G
T
-
E
--
D
I
I
S
T
R
S
K
V
--
F
Q
K
----
L
DIDV
D
------
E
L
S
V
S
E
L
I
N
L
I
S
K
N
P
S
-
L
L
--------
R
R
P
I
I
M
D
N
K
-
R
M
Q
I
G
F
-
N
E
D
E
I
R
A
F
L
P
R
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
76.74
21%
-119
- C4 -
1Z3E
3
SPX_BACSU
A:
[2-119]
------------------------------------------------------------------------------------------------------------------------------------
M
V
T
L
Y
T
S
P
--
S
C
------
T
S
C
------
R
K
A
R
A
W
L
E
E
H
E
I
P
F
V
E
R
N
--
I
F
S
E
P
--
L
S
I
D
E
I
K
Q
I
L
R
M
T
E
D
-
G
T
-
D
--
E
I
I
S
T
R
S
K
V
--
F
Q
K
----
L
NVNV
E
------
S
M
P
L
Q
D
L
Y
R
L
I
N
E
H
P
G
-
L
L
--------
R
R
P
I
I
I
D
E
K
-
R
L
Q
V
G
Y
-
N
E
D
E
I
R
R
F
L
P
R
K
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
71.90
16%
-130
- C4 -
2KOK
-
?
A:
[6-119]
------------------------------------------------------------------------------------------------------------------------------------
S
V
T
I
Y
G
I
K
--
N
C
------
D
T
M
------
K
K
A
R
I
W
L
E
D
H
G
I
D
Y
T
F
H
D
--
Y
K
KE
G
--
L
D
A
E
T
L
D
R
F
L
K
T
V
---
P
W
-
E
--
Q
L
L
N
R
A
G
T
T
--
F
R
K
----
L
----
P
E
D
V
R
S
-
N
V
D
A
A
S
A
R
E
L
M
L
A
Q
P
S
-
M
V
--------
K
R
P
V
L
E
R
D
G
-
K
L
M
V
G
F
-
K
P
A
Q
Y
E
A
Y
F
K
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
66.08
17%
-97
- C4 -
3RDW
1
?
A:
[6-120]
------------------------------------------------------------------------------------------------------------------------------------
D
V
T
I
Y
H
N
P
--
R
C
------
S
K
S
------
R
E
T
L
A
L
V
E
Q
Q
G
I
T
P
Q
V
V
L
--
Y
L
E
T
P
--
P
S
V
D
K
L
K
E
L
L
Q
Q
L
G
F
S
D
A
-
R
--
Q
L
M
R
T
K
E
D
L
--
Y
K
T
----
L
----
N
LDDR--
G
L
T
Q
D
Q
L
L
Q
A
M
A
D
N
P
K
-
L
I
--------
E
R
P
I
V
V
T
Q
G
-
K
A
R
I
G
R
-
P
P
E
Q
V
L
E
I
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
62.87
16%
-103
- C4 -
3F0I
2
?
A:
[5-119]
------------------------------------------------------------------------------------------------------------------------------------
S
V
V
I
Y
H
N
P
--
K
C
------
S
K
S
------
R
E
T
L
A
L
L
E
N
Q
G
I
A
P
Q
V
I
K
--
Y
L
ET
S
--
P
S
V
E
E
L
K
R
L
Y
Q
Q
L
G
L
N
E
V
-
R
A-
M
M
-
R
C
K
E
E
L
--
Y
K
E
----
L
NLGD
S
------
Q
L
S
D
D
A
L
F
A
A
M
A
E
H
P
K
-
L
I
--------
E
R
P
I
V
V
C
N
G
-
Q
A
R
H
G
R
-
P
P
E
Q
V
L
E
I
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
59.47
16%
-90
- C4 -
3FZ4
6
?
A:
[4-117]
------------------------------------------------------------------------------------------------------------------------------------
M
L
T
F
Y
E
Y
P
--
K
C
------
S
T
C
------
R
R
A
K
A
E
L
D
D
L
A
W
D
Y
D
A
I
D
--
I
K
KN
P
--
P
A
A
S
L
I
R
N
W
L
E
N
S
G
L
-
E
L
-
K
K-
F
F
-
N
T
S
G
Q
S
--
Y
R
A
----
L
----
G
LKDKLH
Q
L
S
L
D
E
A
A
N
L
L
A
S
D
G
M
-
L
I
--------
K
R
P
L
L
V
K
E
G
K
I
V
Q
I
G
Y
-
R
T
A
Y
E
D
L
D
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
59.30
19%
-74
- C4 -
3GKX
-
?
A:
[3-117]
-------------------------------------------------------------------------------------------------------------------------------------
T
L
F
L
Q
Y
P
--
A
C
------
S
T
C
------
Q
K
A
K
K
W
L
I
E
N
N
I
E
Y
T
N
R
L
--
I
V
DD
N
--
P
T
V
E
E
L
K
A
W
I
P
L
S
G
L
-
P
V
-
K
--
K
F
F
N
T
S
G
V
V
--
Y
K
E
----
L
----
K
LSSKLP
T
M
T
E
E
E
Q
I
A
L
L
A
T
N
G
K
-
L
V
--------
K
R
P
L
V
V
T
E
R
-
F
V
L
V
G
F
-
K
P
E
E
W
E
K
L
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
57.86
15%
-91
- C4 -
1S3C
6
ARSC1_ECOLX
A:
[3-126]
------------------------------------------------------------------------------------------------------------------------------------
N
I
T
I
Y
H
N
P
--
A
S
------
G
T
S
------
R
N
T
L
E
M
I
R
N
S
G
T
E
P
T
I
I
L
--
Y
L
EN
P
--
P
S
R
D
E
L
V
K
L
I
A
D
M
G
I
-
S
V
-
R
--
A
L
L
R
K
N
V
E
P
--
Y
E
Q
----
L
----
G
LAED--
K
F
T
D
D
Q
L
I
D
F
M
L
Q
H
P
I
-
L
I
--------
N
R
P
I
V
V
T
P
L
-
G
T
R
L
C
R
-
P
S
E
V
V
L
D
I
L
Q
D
A
Q
K
G
A
F
T
K
E
D
-----
G
E
K
V
V
D
E
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
57.43
16%
-100
- C4 -
2M46
-
?
A:
[1-117]
------------------------------------------------------------------------------------------------------------------------------------
M
I
K
F
Y
Q
Y
K
--
N
C
------
T
T
C
------
K
K
A
A
K
F
L
D
E
Y
G
V
S
Y
E
P
I
D
--
I
V
QH
T
--
P
T
I
N
E
F
K
T
I
I
A
N
T
G
V
-
E
I
-
N
--
K
L
F
N
T
H
G
A
K
--
Y
R
E
----
L
----
D
L
K
N
K
L
Q
T
L
S
D
D
E
K
L
E
L
L
S
S
D
G
M
-
L
V
--------
K
R
P
L
A
V
M
G
D
-
K
I
T
L
G
F
-
K
E
D
Q
Y
K
E
T
W
L
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
55.51
16%
-126
- C4 -
3IC4
2
?
A:
[13-91]
------------------------------------------------------------------------------------------------------------------------------------
E
V
L
M
Y
G
L
S
--
T
C
------
P
H
C
------
K
R
T
L
E
F
L
K
R
E
G
V
D
F
E
V
I
W
--
I
D
--
K
--
L
E
G
E
E
R
K
K
V
I
--------------------------------------------------
E
K
V
H
S
I
S
G
-
S
Y
--------
S
V
P
V
V
V
K
G
D
-
K
H
V
L
G
Y
-
N
E
E
K
L
K
E
L
I
R
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
50
Fugue
54.36
18%
-78
- C4 -
1U6T
1
SH3L1_HUMAN
A:
[1-121]
------------------------------------------------------------------------------------------------------------------------------------
V
I
R
V
Y
I
A
S
--
S
S
GS
T
A
I
K
K
K
Q
------
Q
D
V
L
G
F
L
E
A
N
K
I
G
F
E
E
K
D
IA
A
N
--
E
--
E
N
R
K
W
M
R
E
N
V
P
E
N
S
R
-
P
A
-
T
GY
P
L
-
P
P
Q
I
F
N
---
E
S
----
Q
----
Y
------
R
G
D
Y
D
A
F
F
E
A
R
E
N
N
A
-----------------------
V
Y
A
F
L
-
G
L
T
A
P
P
G
--
S
K
E
A
E
V
Q
A
K
Q
Q
A
-----
L
E
H
H
H
H
H
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
51
Fugue
54.27
27%
-49
* C2 *
1VK5
8
RDM1_ARATH
A:
[36-156]
------------------------------------------------------------------------------------------------------------------------------------------
G
S
--
L
L
------
R
R
A
------
E
M
Y
Q
D
Y
M
K
Q
V
P
I
P
T
--------------
N
R
G
S
L
I
P
F
T
S
------
W
-
V
--
G
L
-
S
I
S
M
K
Q
--
L
Y
G
----
Q
-------------
P
L
H
Y
L
T
N
V
L
L
Q
R
W
D
Q
S
R
FGTDSEEQ
R
L
D
S
I
I
H
P
T
-
K
A
E
A
T
I
W
L
V
E
E
I
H
R
L
T
P
S
H
L
H
M
A
L
L
W
R
S
D
P
MYH
S
F
I
D
P
I
F
P
E-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
46
Fugue
49.37
25%
-70
- C1 -
4QFH
2
?
A:
[6-615]
H
H
H
M
K
D
Q
Y
L
K
D
L
T
V
H
L
N
E
SNAAPAN
T
S
M
A
V
A
S
F
N
M
P
H
E
I
T
R
R
M
RPLG
V
D
A
D
TSLTSC
P
S
W
R
R
L
Q
E
L
Y
E
I
HGSESIL
K
N
F
D
E
C
K
D
R
F
Q
R
Y
S
L
E
V
D
LRSSDK
N
F
V
F
L
D
YSKTHIN
D
E
I
K
D
V
L
F
K
L
V
E
E
R
G
I
R
A
F
M
R
A
L
F
A
G
E
KV
N
T
------
A
E
N
------
R
S
V
L
------
H
I
A
L
R
N
R
S
--
N
R
--
P
I
F
V
N
G
H
D
V
M
P
L
V
N
K
V
L
E
-
Q
M
-
K
--
K
L
-
S
E
K
V
R
R
GE
W
K
G
----
Q
----
S
------
G
K
P
I
R
H
V
V
N
I
G
---------------------
I
G
G
S
-
D
L
G
P
M
M
-
A
C
E
A
L
R
P
F
S
D
R
R
I
S
M
H
F
V
S
N
I
--------
D
G
T
H
L
S
E
V
L
N
L
V
DLES
T
L
F
I
I
A
S
KTFTT
Q
E
T
I
T
N
A
L
S
A
R
N
E
F
L
K
F
L
S
S
R
GISEAG
A
V
A
K
H
F
V
A
L
STN
A
E
K
V
K
E
F
GIDEEN
M
F
Q
F
W
DWVGGRYSLWSAIG
L
S
V
M
I
S
IG
Y
D
N
F
V
E
L
L
T
G
A
H
I
M
D
E
H
F
I
N
APTENN
L
P
I
I
L
A
L
V
G
I
W
Y
N
NFFGSE
T
Q
A
I
L
P
YDQYLWR
L
P
A
Y
L
Q
Q
L
D
M
E
S
NGKGATKNGRMVSTHTG
P
I
I
F
G
E
A
G
T
N
G
Q
H
A
FYQLIHQGT
K
L
I
P
C
D
F
I
G
A
IQTQNYIGE
H
H
R
I
L
M
S
N
F
F
A
Q
T
E
A
L
M
IGKT
P
E
E
V
K
R
E
L
E
S
A
GGKS
E
D
E
I
Q
L
L
I
PQKTFTGG
R
P
S
N
S
L
L
V
KALT
P
R
A
L
G
A
I
I
A
M
Y
E
H
K
V
L
V
Q
G
A
I
W
GINSYDQWGV
E
L
G
K
L
L
A
K
S
I
L
L
Q
LQPG
Q
K
V
T
NHD
S
S
T
N
G
L
I
E
L
F
N
E
R
SH
43
HHSearch
49.22
21%
-197
- C4 -
1U6T
-
SH3L1_HUMAN
A:
[1-39]
------------------------------------------------------------------------------------------------------------------------------------
V
I
R
V
Y
I
A
S
--
S
S
------
G
S
T
A
I
K
K
K
Q
Q
D
V
L
G
F
L
E
A
N
K
I
G
F
E
E
K
D
--
I
A
--
A
--
N
E
E
N
R
K
W
M
R
E
N
V
P
E
N
-
S
R
-
P
--
A
T
-
G
Y
P
L
P
P
--
Q
I
F
----
N
----
E
------
S
Q
Y
R
G
D
Y
D
A
F
F
E
A
R
E
N
N
A
V
--------
Y
A
F
L
G
L
T
A
P
-
P
G
S
K
E
A
-
E
V
Q
A
K
Q
Q
A
L
E
H
H
H
H
H
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
HHSearch
47.45
14%
-109
- C4 -
3NZN
5
?
A:
[24-102]
-------------------------------------------------------------------------------------------------------------------------------------
V
I
M
Y
G
L
S
--
T
C
------
V
W
C
------
K
K
T
K
K
L
L
T
D
L
G
V
D
F
D
Y
V
Y
--
V
D
--
R
--
L
E
G
K
E
E
--------------------------------------------------
E
E
A
V
E
E
V
R
R
F
N
P
-
S
V
--------
S
F
P
T
T
I
I
N
D
E
K
A
I
V
G
F
-
K
E
K
E
I
R
E
S
L
G
F
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------