@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs1564: (2015-12-08 )
MKQDYISYIRSKVGHETIFLTYSGGILTDGKGRVLLQLRADKNSWGIIGGCMELGESSVDTLKREFFEETGLRVEPIRLLNVYTNFQDSYPNGDKAQTVGFIYEVSCPKPVNIEGFHNEETLQLDYFSKEDVKNITIVNEQHQLILDEYFSQTFQMGR
Atome Classification :
(20 SA)
-------.........10....--....20........---30.........40-----.---.-----....-..50...--.....60........70.....--...80---------------...-------.---....--90..-----------......100...--....110....----....120.......130....---.-.-.----140.-...-...150......--------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------MK
Q
D
Y
I
S
Y
I
R
S
KVGH--
E
T
I
F
L
T
YSG
G
I
L
TD---G-K
G
R
V
L
L
Q
L
RAD-----K---N-----SW
G
I
-
I
G
G
C
M
EL--G
E
S
S
V
D
T
L
K
R
E
F
F
E
E
TG
L
R
V
E
P
--
I
R
L
L
N
---------------
V
YT-------N---FQDS--YPNG-----------DK
A
Q
T
V
G
F
I
Y
EV--SCPKP-V
N
I
E
G----FHNE
E
T
L
Q
L
DYFSKEDVK
N
I
T
---
I
-V-
N
----
E
Q
H
Q
-
L
I
L
-
D
E
Y
F
S
Q
T
FQMGR--------
17
PsiBlast_PDB
79.09
24%
-59
- C1 -
4HFQ
16
?
A:
[59-194]
---------------
L
K
P
T
S
A
Y
--
A
T
P
L
M
D
V
R
A
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I
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E
D
---
E
-
K
--
I
C
L
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R
G
Q
G
-----
E
---
D
-----
S
W
A
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-
P
G
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F
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E
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--
G
Y
S
P
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N
I
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K
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I
E
E
E
T
G
F
K
A
K
V
--
E
R
L
L
A
---------------
V
F
D
-------
T
-----------
N
R
-----------
F
Q
L
Q
S
K
Q
Y
T
K
F
V
--
F
G
C
K
L
-
L
D
G
Q
F
----
Q
E
N
Q
E
I
A
D
L
Q
F
F
A
I
D
Q
L
P
N
L
S
EKR
I
-
T
-
K
----
E
Q
I
E
-
L
L
W
-
Q
V
Y
Q
G
H
R
G
Q
Y
L
D
--------
81
HHSearch
76.98
24%
-79
* C1 *
3CNG
7
?
A:
[37-164]
-------------------------
Q
N
P
K
V
I
V
G
C
I
P
E
W
-----
E
N
K
V
L
L
C
K
R
A
I
APY--
R
---
G
-----
K
W
T
L
-
P
A
G
F
M
E
N
--
N
E
T
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A
A
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T
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E
E
A
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E
I
--
R
E
L
Y
A
---------------
V
Y
S
-------
L
---
P
---------------------
H
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S
Q
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A
--
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--
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------
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---
I
-
A
-
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----
R
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I
H
-
D
P
L
-
K
R
Y
M
E
E
R
H
H
G
Q
P
--------
74
HHSearch
71.77
21%
-80
- C1 -
3I7U
6
?
A:
[3-130]
---------------------------
K
E
F
S
A
G
G
V
L
F
K
-----
D
G
E
V
L
L
I
K
T
P
------
S
---
N
-----
V
W
S
F
-
P
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N
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--
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E
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E
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--
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---------------
E
I
H
-------
Y
---
W
Y
T
L
----
K
G
-----------
E
R
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F
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V
K
Y
Y
L
M
--
K
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--
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P
R
P
------
S
W
E
V
K
D
A
K
F
F
P
I
K
E
A
K
K
-----
L
-
L
K
Y
----
K
G
D
K
-
E
I
F
-
E
K
A
L
K
L
K
E
K
F
K
---------
85
HHSearch
69.51
21%
-74
- C1 -
1VCD
2
NDX1_THETH
A:
[2-123]
----------------------------
E
L
G
A
G
G
V
V
F
N
---
A
-
K
R
E
V
L
L
L
R
D
R
------
M
---
G
-----
F
W
V
F
-
P
K
G
H
P
E
P
--
G
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E
E
A
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E
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G
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A
E
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--
L
L
P
L
Y
---------------
P
T
R
-------
Y
---
V
N
P
------------------
K
G
V
E
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E
V
H
W
F
L
M
--
R
G
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A
---
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R
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------
E
E
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M
T
G
A
G
W
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E
E
A
R
A
-----
L
-
L
-
A
F---
P
E
D
L
-
G
L
L
-
E
V
A
L
E
R
L
P
L
-----------
87
HHSearch
69.27
20%
-72
- C1 -
2PQV
-
?
A:
[12-147]
-------------------
K
V
D
--
N
T
V
F
G
V
R
A
T
A
L
I
V
Q
-----
N
H
K
L
L
V
T
K
D
-------
K
---
G
-----
K
Y
Y
T
-
I
G
G
A
I
Q
V
--
N
E
S
T
E
D
A
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V
R
E
V
K
E
E
L
G
V
K
A
Q
A
--
G
Q
L
A
F
---------------
V
V
E
-------
N
---
R
F
E
V
----
D
G
-----------
V
S
Y
H
N
I
E
F
H
Y
L
V
--
D
L
L
E
D
-
A
P
L
T
M
----
Q
E
D
E
K
R
Q
P
C
E
W
I
D
L
D
K
L
Q
N
-----
I
-
Q
-
L
VP--
V
F
L
K
-
T
A
L
-
P
D
W
E
G
Q
L
R
H
I
H
L
--------
82
HHSearch
68.50
17%
-52
- C1 -
1F3Y
-
?
A:
[6-161]
------------------
M
D
S
P
--
P
E
G
Y
R
R
N
V
G
I
C
L
M
N
---
N
-
D
K
K
I
F
A
A
S
R
L
D
I----
P
---
D
-----
A
W
Q
M
-
P
Q
G
G
I
D
E
--
G
E
D
P
R
N
A
A
I
R
E
L
R
E
E
T
G
V
T
S
A
E
--
V
I
A
E
V
---------------
P
Y
W
-------
L
---
T
Y
D
---
F
P
P
K
V
R
E
K
LNIQWGS
D
W
K
G
Q
A
Q
K
W
F
L
F
--
K
F
T
G
Q
D
Q
E
I
N
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LGDG
S
E
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P
E
F
G
E
W
S
W
V
T
P
E
Q
L
I
D
-----
L
-
T
-
V
----
E
F
K
K
-
P
V
Y
-
K
E
V
L
S
V
F
A
P
H
L
---------
70
HHSearch
67.49
15%
-69
- C1 -
1RYA
3
GMM_ECOLI
A:
[6-154]
--------------
Q
E
D
F
A
T
V
V
--
R
S
T
P
L
V
S
L
D
F
I
V
E
N
---
S
-
R
G
E
F
L
L
G
K
R
T
N
-----
R
PAQ
G
-----
Y
W
F
V
-
P
G
G
R
V
Q
K
--
D
E
T
L
E
A
A
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E
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T
M
A
E
L
G
L
R
L
P
I
TA
G
Q
F
Y
G
---------------
V
W
Q
-------
H
---
F
Y
D
D
NF
S
G
T
D
-----------
F
T
T
H
Y
V
V
L
G
F
R
F
--
R
V
S
E
E
--
E
L
L
L
-----
P
D
E
Q
H
D
D
Y
R
W
L
T
S
D
A
L
L
A
S
D
---
N
-
V
-
H
----
A
N
S
R
-
A
Y
F
-
L
A
E
K
R
T
G
V
P
G
L
---------
75
HHSearch
66.85
22%
-81
- C1 -
3FK9
-
?
A:
[1-128]
---------------------------
L
Q
R
V
T
N
C
I
V
V
D
-----
H
D
Q
V
L
L
L
Q
K
P
R
-----
R
---
G
-----
W
W
V
A
-
P
G
G
K
M
E
A
--
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E
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G
I
T
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K
N
--
P
E
L
K
G
---------------
I
F
S
-------
M
---
V
I
F
D
--
E
-
G
K
-----------
I
V
S
E
W
M
L
F
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F
K
A
--
T
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H
E
G
--
E
M
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------
Q
S
P
E
G
K
L
E
W
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K
K
D
E
V
L
E
L
P
-----
M
-
A
----
A
G
D
K
-
W
I
F
-
K
H
V
L
H
S
D
R
L
L
Y
G
--------
77
HHSearch
66.47
17%
-63
- C1 -
3O8S
5
?
A:
[68-197]
--------------------------
T
P
K
L
D
T
R
A
A
I
F
Q
-----
E
D
K
I
L
L
V
Q
E
N
------
D
---
G
-----
L
W
S
L
-
P
G
G
W
C
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--
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N
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E
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--
Q
R
V
V
A
---------------
I
L
D
-------
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---
H
K
N
N
--
P
-----------------
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F
I
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C
--
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G
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--
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A
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F
S
L
D
D
L
P
P
-----
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-
Y
L
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----
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N
T
A
-
E
Q
L
-
A
L
C
L
E
A
S
R
S
E
H
W
--------
89
HHSearch
66.09
16%
-72
- C1 -
3Q93
6
8ODP_HUMAN
A:
[23-155]
--------------------------
A
S
R
L
Y
T
L
V
L
V
L
Q
-----
P
Q
R
V
L
L
G
M
K
K
R
GFG--
A
---
G
-----
R
W
N
G
-
F
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Q
E
--
G
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---
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F
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-----
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-
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W---
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Y
W
F
-
P
L
L
L
Q
K
K
K
F
H
G
Y
--------
84
HHSearch
65.09
16%
-84
- C1 -
3GRN
2
?
A:
[3-137]
---------------------
L
--
E
K
P
Y
I
I
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Y
A
L
I
R
N
---
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-
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G
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F
L
L
L
R
R
S
E
NSRTN
A
---
G
-----
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-------
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------
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----
A
Y
F
R
-
D
F
F
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E
R
F
D
R
E
N
K
K
-----------
88
HHSearch
64.92
15%
-74
- C1 -
2O1C
3
NUDB_ECOLI
A:
[7-148]
--------------------------
K
R
P
V
S
I
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V
I
Y
A
---
Q
D
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K
R
V
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R
R
D
D----
P
---
D
-----
F
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-
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--
E
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L
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L
---------------
I
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E
F
E
I
FSH
L
R
H
R
--
Y
A
P
------------
G
V
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R
N
T
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--
A
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H
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---
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I
-----
V
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A
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A
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A
A
-----
L
-
T
K
S
----
W
S
N
R
-
Q
A
I
-
E
Q
F
V
I
N
--------------
86
HHSearch
63.48
21%
-62
- C1 -
3EXQ
2
?
A:
[5-139]
---------------------
R
--
T
Q
P
V
E
L
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M
V
M
V
T
D
---
P
E
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-----
V
PWK
A
-----
G
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-
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--
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--
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-------
W
---
F
D
D
D
-----------------
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-------
S
A
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W
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I
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-----
E
-
N
-
S
A---
A
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P
-
E
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V
F
T
G
T
A
S
T
L
V
S
--------
73
HHSearch
63.07
14%
-80
- C1 -
1VK6
2
NUDC_ECOLI
A:
[137-266]
-------------------------
P
Q
I
A
P
C
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I
V
A
I
R
R
-----
D
D
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I
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L
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HR---
N
---
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-----
V
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-
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F
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--
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--
L
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V
T
---------------
S
Q
P
-------
W
---
P
---------------------
F
P
Q
S
L
M
T
A
F
M
A
--
E
Y
D
S
G
--
D
I
V
I
-----
D
P
K
E
L
L
E
A
N
W
Y
R
Y
D
D
L
P
L
-----
L
-
P
-
P
PG--
T
V
A
R
-
R
L
I
-
E
D
T
V
A
M
C
R
A
E
Y
---------
78
HHSearch
62.57
16%
-69
- C1 -
2B0V
2
?
A:
[6-139]
--------------------------
K
P
N
V
T
V
A
A
V
I
E
Q
-----
D
D
K
Y
L
L
V
E
E
I
P
-----
R
G
T
A
I
-----
K
L
N
Q
-
P
A
G
H
L
E
P
--
G
E
S
I
I
Q
A
C
S
R
E
V
L
E
E
T
G
H
S
F
L
P
--
E
V
L
T
G
---------------
I
Y
H
-------
W
---
T
C
A
S
-----------------
N
G
T
T
Y
L
R
F
T
F
S
G
--
Q
V
V
S
F
--
D
P
D
R
----
K
L
D
T
G
I
V
R
A
A
W
F
S
I
D
E
I
R
A
-----
K
-
Q
-
A
MHRT
P
L
V
M
-
Q
C
I
-
E
D
Y
H
A
G
K
R
Y
P
L
D
--------
96
Fugue
61.75
15%
-53
- C1 -
1HX3
3
IDI_ECOLI
A:
[4-179]
E
H
V
I
L
L
N
A
Q
G
V
P
T
G
T
L
E
K
Y
A
A
H
TA
D
T
R
L
H
L
A
F
S
S
W
L
F
N
---
A
-
K
G
Q
L
L
V
T
R
R
A
L
-----
S
---
K
KAWPG
V
W
T
N
S
V
A
G
H
P
Q
L
--
G
E
S
N
E
D
A
V
I
R
R
C
R
Y
E
L
G
V
E
I
T
P
--
P
E
S
I
Y
---------------
P
D
F
-------
R
---
Y
R
A
T
--
D
P
S
G
-----------
I
V
E
N
E
V
C
P
V
F
A
A
R
T
T
S
A
L
Q
-
I
N
D
D
E
----
V
M
D
Y
Q
W
C
D
L
A
D
V
L
H
G
I
D
A
T
P
W
---
A
-
F
-
S
----
P
W
M
V
-
M
Q
A
T
N
R
E
A
R
K
R
L
S
A
F
T
--------
80
HHSearch
61.56
15%
-77
- C1 -
3Q1P
1
?
A:
[65-195]
-------------------------
Q
T
P
K
V
D
I
R
A
V
V
F
Q
-----
N
E
K
L
L
F
V
K
E
-----------
G
-----
K
W
A
L
-
P
G
G
W
A
D
V
--
G
Y
T
P
T
E
V
A
A
K
E
V
F
E
E
T
G
Y
E
V
D
H
--
F
K
L
L
A
---------------
I
F
D
-------
K
---
E
K
H
Q
--
P
-
S
P
-----------
S
A
T
H
V
Y
K
I
F
I
G
C
--
E
I
I
G
G
--
E
K
K
T
------
S
I
E
T
E
E
V
E
F
F
G
E
N
E
L
P
N
-----
L
-
S
-
I
A---
R
N
T
E
-
D
Q
I
-
K
E
M
F
A
Y
M
K
D
P
Q
K
--------
94
Fugue
61.43
20%
-60
- C1 -
1K2E
7
?
A:
[1-152]
----------------------------
M
I
V
T
S
G
V
L
V
E
---
N
--
G
K
V
L
L
V
K
H
K
R
-----
L
---
G
-----
V
Y
I
Y
-
P
G
G
H
V
E
H
--
N
E
T
P
I
E
A
V
K
R
E
F
E
E
E
T
G
I
V
V
E
P
--
I
G
F
T
Y
GIIDEN
A
V
E
R
P
M
P
LV
I
L
E
-------
E
---
V
V
K
Y
--
P
E
E
T
-----------
H
I
H
F
D
L
I
Y
L
V
K
R
--
V
G
G
D
L
-
K
N
G
E
W
----
I
D
V
R
E
I
D
R
I
E
T
F
P
--
N
V
R
K
V
V
---
S
-
L
-
A
----
L
S
T
L
-
Y
R
L
-
G
K
I
S
K
L
A
A
A
L
E
H
H-------
92
Fugue
60.41
18%
-48
- C1 -
2B0V
3
?
A:
[6-153]
---------------------------
K
P
N
V
T
V
A
A
V
I
E
---
Q
-
D
D
K
Y
L
L
V
E
E
I
P
RG
T
--
A
---
I
-----
K
L
N
Q
-
P
A
G
H
L
E
P
--
G
E
S
I
I
Q
A
C
S
R
E
V
L
E
E
T
G
H
S
F
L
P
--
E
V
L
T
G
---------------
I
Y
H
-------
W
---
T
C
A
S
----
N
G
-----------
T
T
Y
L
R
F
T
F
S
G
Q
V
--
V
S
F
D
P
-
D
R
K
L
D
-------
T
G
I
V
R
A
A
W
F
S
I
D
E
I
R
A
K
Q
---
A
M
H
-
R
----
T
P
L
V
M
Q
C
I
-
E
D
Y
H
A
G
K
R
Y
P
L
D
I
L
Q
Y
Y
DGS
79
HHSearch
60.15
18%
-67
- C1 -
3GZ5
1
?
A:
[21-157]
---------------------------
Q
L
L
T
V
D
A
V
L
F
T
Y
H
D
Q
-
Q
L
K
V
L
L
V
Q
R
S
N
HPF--
L
---
G
-----
L
W
G
L
-
P
G
G
F
I
D
E
TC
D
E
S
L
E
Q
T
V
L
R
K
L
A
E
K
T
A
V
V
P
P
Y
--
I
E
Q
L
C
---------------
T
V
G
-------
N
---
N
S
R
D
-----------------
A
R
G
W
S
V
T
V
C
Y
T
A
--
L
M
S
Y
Q
--
A
C
Q
I
-----
Q
I
A
S
V
S
D
V
K
W
W
P
L
A
D
V
L
Q
M
P
-----
L
-
A
----
F
D
H
L
-
Q
L
I
-
E
Q
A
R
E
R
L
T
Q
K
A
L
--------