@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs1877: (2015-12-11 )
MSQLSLEEQLNRLKDKYLSSKNQEFSNVHLSKVKKKKKKLIILEKERCRCRLEREDTKKIDDKIEKLKKELIDVMKEE
Atome Classification :
(20 SA)
-------------------------------....-..-.-..10........20.....-...30........40..---..-...-.50........60.-.------..--.---------...70.......----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------MSQL-
S
L
-
E
-
E
Q
L
N
R
L
K
D
K
Y
LSSKNQEF
S
-
N
V
H
L
S
K
V
K
K
KKK
K
L
I
I
L
---
E
K
-
E
R
C
-
R
C
RLERE
D
T
K
K
I
D
D
-
K
------
I
E
--
K
---------
L
K
K
E
L
I
D
V
MKEE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
85.90
30%
1
- C5 -
2J69
-
BDLP_NOSP7
A:
[604-652]
---------------------------------------------------------------
H
L
P
Q
V
A
H
E
Q
S
Q
V
V
Y
N
---
A
V
-
K
E
C
-
F
D
S
Y
E
R
E
V
S
K
R
I
N
D
-
D
------
I
V
--
S
---------
R
K
S
E
L
D
N
L
V
K
Q
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
84.34
30%
1
- C5 -
2W6D
-
BDLP_NOSP7
A:
[604-652]
---------------------------------------------------------------
H
L
P
Q
V
A
H
E
Q
S
Q
V
V
Y
N
---
A
V
-
K
E
C
-
F
D
S
Y
E
R
E
V
S
K
R
I
N
D
-
D
------
I
V
--
S
---------
R
K
S
E
L
D
N
L
V
K
Q
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
83.83
30%
1
- C5 -
2J68
-
BDLP_NOSP7
A:
[604-652]
---------------------------------------------------------------
H
L
P
Q
V
A
H
E
Q
S
Q
V
V
Y
N
---
A
V
-
K
E
C
-
F
D
S
Y
E
R
E
V
S
K
R
I
N
D
-
D
------
I
V
--
S
---------
R
K
S
E
L
D
N
L
V
K
Q
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
66.72
20%
60
- C5 -
1ZX3
-
?
A:
[10-95]
----------------------EVQQPDPM
R
K
N
W
I
M
E
N
M
D
-
S
G
V
I
Y
L
L
E
S
W
L
K
A
K
S
Q
E
-
T
-
G
K
E
I
S
D
I
F
A
N
A
V
E
F
N
I
V
---
L
K
-
D
W
G
-
K
E
K
L
E
E
T
N
T
E
Y
-
Q
N
-
Q
------
Q
R
--
K
---------
L
R
K
T
Y
I
E
Y
Y
D
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
61.51
47%
16
- C5 -
2FM8
-
SIPA_SALTY
C:
[144-164]
-----------------------------------------------------------------------------------------------
E
T
K
K
A
E
A
-
K
------
L
E
--
N
---------
L
E
K
Q
L
L
D
I
I
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
59.02
18%
13
* C5 *
2GV5
-
SFI1_YEAST
C:
[638-710]
----------------------------------
G
-
P
L
-
G
-
S
K
L
N
D
I
L
H
V
Y
E
K
S
K
E
R
E
L
Q
-
S
Q
L
F
N
A
W
R
N
R
F
C
F
Y
T
--------
E
E
C
-
N
I
Q
A
I
S
K
R
N
Y
Q
L
E
K
M
V
------
L
K
--
K
---------
F
R
E
R
L
L
E
I
V
K
S
E
E---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
58.62
17%
-6
- C4 -
3UXU
1
A:
[4-162]
I
Y
I
P
T
L
E
E
I
K
R
T
L
Q
L
A
K
D
Y
S
E
N
V
Y
F
I
Y
R
I
A
L
E
S
G
V
-
R
L
-
S
-
E
V
L
K
V
L
K
E
P
E
R
D
I
C
G
N
D
V
C
-
Y
Y
P
L
S
W
T
R
G
Y
K
G
V
F
Y
V
F
---
H
I
-
T
P
L
K
R
V
E
V
T
K
W
A
I
A
D
F
E
R
-
R
H
K
DAIA
I
K
--
Y
---------
F
R
K
F
V
A
S
K
M
A
E
L
SVP
L
D
I
I
D
F
I
Q
GR
K
P
A
RVLT
Q
H
Y
V
S
L
F
G
I
A
K
E
Q
Y
K
K
Y
A
E
W
L
K
G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
56.27
47%
17
- C5 -
2FM9
-
SIPA_SALTY
A:
[144-164]
-----------------------------------------------------------------------------------------------
E
T
K
K
A
E
A
-
K
------
L
E
--
N
---------
L
E
K
Q
L
L
D
I
I
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
52.14
27%
-6
- C5 -
1VQ8
-
RL29_HALMA
V:
[12-33]
-------------------------------
M
T
P
A
-
E
R
-
E
-
A
E
L
D
D
L
K
T
E
L
L
N
A
R
A
V
Q
A
A
-
G
G
A
P
E
N
P
G
R
I
K
E
L
R
K
A
I
---
A
R
-
I
K
T
-
I
Q
G
E
E
G
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
48.86
16%
24
- C5 -
4IMP
1
?
A:
[31-550]
-----------------SD
P
A
A
G
W
F
W
Q
A
V
A
R
Q
D
L
K
-
S
V
-
S
-
D
A
L
D
L
D
A
D
A
P
L
S
A
T
L
P
A
L
S
-
V
W
H
-----
R
Q
E
R
E
R
V
L
A
---
D
G
-
W
R
Y
-
R
V
D
W
V
R
V
A
P
Q
P
V
R
R
-
T
------
R
E
--
T
W
L
L
V
V
P
PGG
I
E
E
A
L
V
E
R
L
T
D
A
L
N
T
R
G
I
S
T
L
R
L
D
V
P
P
AAT
S
G
E
L
A
T
E
L
R
A
A
A
D
G
DPVK
A
I
L
S
LTALDERPHPECKDVP
S
G
I
A
L
L
L
N
L
V
K
A
L
G
E
A
DLR
I
P
L
W
T
I
T
R
GAVKAGPADRLLR
P
M
Q
A
Q
A
W
G
L
G
R
V
A
A
L
E
HPERWG
G
L
I
D
L
P
DSLDGD
V
L
T
R
L
G
E
A
L
T
NGLAED
Q
L
A
I
R
QS
G
V
L
A
R
R
L
V
P
A
P
ANQPAGRK
W
R
P
R
G
S
A
L
I
T
GGLG
A
V
G
A
Q
V
A
R
W
L
A
E
I
GAE
R
I
V
L
T
S
RRGNQAAG
A
A
E
L
E
A
E
L
R
A
L
G
A
Q
V
S
I
V
ACDVTD
R
A
E
M
S
A
L
L
A
E
F
DVT
A
V
F
H
A
A
G
V
G
R
L
L
P
LAETD
Q
N
G
L
A
E
I
C
A
A
K
V
R
G
A
Q
V
L
D
E
L
C
DSTDLDAF
V
L
F
S
S
GAGVWGGGGQ
G
A
Y
G
A
A
N
A
F
L
D
T
L
A
E
Q
R
R
A
R
G
L
P
A
T
S
I
S
W
G
S
WAGGGMADG
A
A
G
E
H
L
R
R
R
G
I
R
P
M
P
A
A
S
A
I
L
A
L
Q
E
V
L
D
Q
DET
C
V
S
I
A
DVD
W
D
R
F
V
P
T
F
A
A
TRATRLFDEV
P
A
A
R
K
AM
11
HHSearch
47.32
16%
29
- C5 -
3A2A
1
HVCN1_HUMAN
A:
[11-51]
-----------------------------------------------------------------
R
Q
L
L
R
L
K
Q
M
N
V
Q
L
---
A
--
A
K
I
-
Q
H
L
E
F
S
--
C
S
E
K
E
Q
-
E
------
I
E
--
R
---------
L
N
K
L
L
R
Q
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
45.10
20%
24
- C5 -
3VN0
-
HVCN1_MOUSE
A:
[223-263]
------------------------------------------------------------------
Q
I
L
R
L
K
Q
I
N
I
Q
L
---
A
--
T
K
I
-
Q
H
L
E
F
S
--
S
S
E
K
E
Q
-
E
------
I
E
--
R
---------
L
N
K
L
L
K
Q
N
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
44.64
14%
10
- C5 -
1R73
-
RL29_THEMA
A:
[9-30]
-------------------------------
Y
T
D
E
-
E
L
-
K
-
N
L
L
E
E
K
K
R
Q
L
M
E
L
R
F
Q
L
A
M
-
G
Q
L
K
N
T
S
L
I
K
L
T
K
R
D
I
A
---
R
I
-
K
T
I
-
L
R
E
R
E
L
G
I
R
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
44.58
14%
-24
- C5 -
2BZB
-
?
A:
[1-21]
-------------------------------
M
E
M
G
-
Q
L
-
K
-
N
K
I
E
N
K
K
K
E
L
I
Q
L
V
A
R
H
G
L
-
D
H
D
K
V
L
L
F
S
R
D
L
D
K
L
I
N
---
K
F
-
M
N
V
-
K
D
K
V
H
K
L
E
H
H
H
H
H
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
41.85
14%
-23
- C5 -
2C0S
-
?
A:
[1-21]
-------------------------------
M
N
V
T
-
K
L
-
N
-
D
R
I
E
A
K
K
K
E
L
I
Y
L
V
E
K
Y
G
F
-
T
H
H
K
V
I
S
F
S
Q
E
L
D
R
L
L
N
---
L
L
-
I
E
L
-
K
T
K
K
K
R
Y
S
L
L
E
H
H
H
-
H
------
H
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
41.55
12%
90
- C4 -
3LKX
-
A:
[25-90]
-------------------------------
V
N
N
I
-
S
G
-
I
-
E
E
V
N
M
F
T
N
---
Q
G
T
V
I
H
F
N
-
N
P
K
V
Q
A
S
L
A
N
T
F
T
I
T
----------------
G
H
A
E
T
K
Q
L
T
E
-
M
------
L
P
--
S
---------
I
L
N
Q
L
G
A
D
S
L
T
S
L---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
40.64
11%
65
* C4 *
2G7J
-
?
A:
[1-112]
-----------------------MYLR
P
D
E
V
A
R
V
L
-
E
K
-
A
-
G
F
T
V
D
V
V
T
N
K
T
Y
G
Y
R
R
G
E
N
-
Y
V
Y
V
N
R
E
A
R
M
G
R
T
A
L
I
I
H
P
R
L
K
-
D
R
S
-
S
S
L
A
D
P
A
S
D
I
K
T
C
D
-
H
------
Y
Q
--
N
---------
F
P
L
Y
L
G
G
E
T
H
E
H
Y
G
I
P
H
G
F
SS
R
I
A
L
E
R
Y
L
N
G
L
FGD-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
37.12
14%
129
- C5 -
2XU6
-
MDV1_YEAST
A:
[243-263]
----------------------------------------------------------------------------------------
Q
K
N
S
T
M
S
E
I
R
D
I
E
V
-
E
------
V
E
--
N
---------
L
R
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
30.79
12%
99
- C4 -
2FFG
-
YKUJ_BACSU
A:
[2-81]
------------------------------------
S
Q
-
L
M
G
I
I
T
R
L
Q
S
L
Q
E
T
A
E
A
A
N
E
P
M
Q
R
Y
F
E
V
N
G
E
K
I
C
S
V
K
Y
F
---
E
K
N
Q
T
F
-
E
L
T
V
F
Q
K
G
E
K
P
N
T
Y
-
P
------
F
D
N
I
D
M
--------
V
S
I
E
I
F
E
L
L
Q
L
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
22.20
32%
191
- C3 -
3B71
-
CD4_HUMAN
D:
[4-14]
------------------------------------------------------------------
R
M
S
Q
I
K
R
L
L
--
S
---
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------