@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs1995: (2015-12-12 )
MNKKSFFQCVILLVSFLVLTLAVKSQSDMISYLDNITSAFFQSIRNPDLTNLMTIISTVVSPLTTSLIALVILGYQYFLNQRIAVWLFMLFFGTNALALLLKDIIARHRPMNQLVFDSGYSFPSGHTISTFLLMILVLVVARQRLRRVLSQVVFVIFALVILASVIFSRLYLENHFLTDILGSLLLGASSYYGLSAIVSLKELQ
Atome Classification :
(16 SA)
------.........10.--------..-.....20........30........40..-....-----.--.50........60........70........80......---------..90..-.---------------....-.100.......110.---------.---------------------------..-----...120.....--.--.130.......140.....-------------------.--------------------------------------.150---------------.......------------------.160-....-...170..-.....180.......190.-.......-----------200..------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------M
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AVKS
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S-IRNP-----
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FG-
T
---------------
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A
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-
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A
RHRPMN
Q
---------
L
---------------------------VF-----DSGYSFPSG
H
T
--
I
--
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M
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LGASS-YY-
G
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A
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-----------
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K
ELQ------------
14
Fugue
87.42
18%
-161
- C3 -
2PNN
1
TRPV1_RAT
A:
[11-258]
-----L
Y
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SNCQELES
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-
N
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--
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--------------------------------------
L
Q
N
SWQPADISARDSVGNT
V
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ADNT
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------------
11
Fugue
87.09
19%
-157
- C5 -
4PX7
2
?
A:
[1-258]
---GR
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KDKVQEPR
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-
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HMP
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LKR
A
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Y
L
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---------
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---------------------------
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-----
E
T
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--
A
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---------------------------------------------------------------------------------
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CGPLTPPE
E
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EHH--
10
Fugue
81.39
13%
-151
- C5 -
1D2T
1
?
A:
[7-230]
GNDTTT
K
P
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L
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Y
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GVSTCNTQ
D
---------------------------
K
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-----
S
K
N
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G
H
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--
S
--
I
G
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E
-------------------
I
--------------------------------------
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----------------
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Y
E
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------------------
R
V
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-
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17
Fugue
74.81
13%
-160
- C4 -
1Q87
-
?
A:
[147-345]
---S
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A
M
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---------------
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L
I
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N
N
K
G
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W--------
L
---------------------------
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D
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--
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I
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W
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------------------------------------
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PTFAP------
M
H
H
H
H
------------
2
HHSearch
65.97
21%
-98
- C5 -
1D2T
1
?
A:
[108-212]
----------------------------------------------------------------------------------------------------------------------------------------------
D
L
A
T
-
R
S
A
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D
H
Y
M
R
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---------
Y
GVSTCNTQD------------------
K
L
-----
S
K
N
G
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H
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--
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--
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-----------------------------------------------------------------------------------
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F
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------------
4
HHSearch
64.77
15%
-108
- C5 -
3BB0
1
PRXC_CURIN
A:
[341-513]
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A
C
T
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-
A
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---------
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R
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DGRPDHGDPFWLTLGAPATNTNDIP
F
K
-----
P
P
F
P
A
Y
P
S
G
H
A
--
T
--
F
G
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A
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R
Y
Y
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G
R
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DDEP-------------
D
NIAIDMMISEELNGVNRDLRQPYDPTAPIEDQPGIVR
T
R
I
V
----------------
R
-
H
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S
A
------------------
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N
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A
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------------
16
Fugue
64.05
13%
-113
- C2 -
4HSP
11
?
A:
[1-149]
------
G
A
P
R
E
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L
I
PAG-----
A
P
-
P
A
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A
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Y
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A
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-----------
Y
E
Y
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------------
5
HHSearch
61.68
17%
-125
- C5 -
1UP8
2
PRXV_CORPI
A:
[477-577]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
-----
P
F
H
P
S
Y
G
S
G
H
A
--
V
--
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KDED
K
L
V
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S
S--
F
--------------------------------------
K
G
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----------------
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T
V
A
G
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------------------
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-----------
L
T
Y
G
E
------------
3
HHSearch
61.47
17%
-105
- C5 -
1QI9
4
PRXV_ASCNO
A:
[392-512]
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P
N
N
E
V
T
Y
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Q
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DCYPD
P
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DDGL
K
L
I
D
F
R
--------------------------------------
G
S
C
----------------
L
T
F
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E
I
------------------
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K
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F
A
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1
PsiBlast_PDB
57.82
28%
-117
- C5 -
4PX7
1
?
A:
[132-213]
----------------------------------------------------------------------------------------------------------------------------------------------------
L
V
K
E
Q
L
A
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Q
---------
Y
---------------------------
L
R
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W
Q
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F
A
F
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G
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--
M
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---
R
R
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L
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I
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A
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19
Fugue
42.96
20%
-64
* C5 *
1IFP
-
?
?:
[1-44]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
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S
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I
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L
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I
T
T
I
G
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A
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I
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V
L
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G
I
R
W
I
K
A
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Q
F
F
----------------------------------------------------
13
Fugue
32.44
26%
20
- C5 -
1SKH
-
PRIO_BOVIN
A:
[1-30]
----------------------------------------------------------------------------------------------------
M
V
K
S
K
I
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I
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L
F
V
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-
M
---------------
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S
D
V
-
G
L
C
K
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---
R
P
K
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
28.42
17%
213
- C5 -
2LX0
-
?
A:
[3-14]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
T
I
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-----------
Y
L
Q
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------------
7
HHSearch
24.64
43%
1316
- C1 -
2ZVK
-
?
U:
[2-8]
----------------------------------------------------------------------------------------------------------------------------------------------------------
K
R
P
R
P
E
G
M
---------
Q
---------------------------
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L
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S
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P
L
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-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
23.20
14%
141
- C5 -
2IFO
-
CAPSD_BPXF
A:
[23-44]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
A
I
G
G
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V
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V
Y
K
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R
-----------
R
A
M
--------------
6
HHSearch
22.24
38%
217
- C5 -
2K1K
-
EPHA1_HUMAN
A:
[551-563]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
F
G
L
L
L
G
A
A
L
-
L
L
------------------------------------