@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs2040: (2015-12-12 )
MGKYQLDYKGQAQVQKFHEKHSTGENANQKSRLKDLRKQFLEKAKKK
Atome Classification :
(17 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.---------........10....---------------....20.----.......30...------.-....40......----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M---------G
K
Y
Q
LDYKG
Q
A
Q
V
Q
---------------
K
F
H
E
KHS----TGENA
N
Q
K
S
R
L
K
------
D
-
L
R
K
Q
F
L
E
K
AKKK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
78.98
33%
-12
- C5 -
4JM1
2
?
A:
[1-84]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
A
---------
D
K
Y
I
D
T
I
T
G
F
-
S
C
E
---------------
K
A
A
V
T
D
N
G
F
L
V
I
A
I
D
A
D
S
D
S
G
Y
-------
D
M
L
A
S
Q
F
L
E
E
A
K
K
E
GVSGLK
G
V
L
I
V
D
IKN
A
K
F
E
QGAVVGKRI
G
K
A
Y
K-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
63.14
22%
10
* C5 *
3A4M
5
PSTK_METJA
A:
[3-252]
D
I
M
L
I
I
L
T
G
L
P
GVG
K
S
T
F
S
K
N
L
A
K
I
L
S
K
N
N
I
D
V
I
V
L
G
S
D
L
I
R
E
S
FPVWKEKY
E
E
F
I
K
K
S
T
Y
R
L
I
D
S
A
L
K
N
Y
W
V
I
V
DDTNYY
N
S
M
R
R
D
L
I
N
I
A
K
K
Y
N
K
N
Y
A
I
I
Y
L
K
A
S
L
D
V
L
I
R
R
N
I
E
R
GEKIP
N
E
V
I
K
K
M
Y
E
K
FDEPGKKYKWDEPFLIIDTTKDID
F
N
E
I
A
K
K
L
I
E
K
S
K
E
I
P
K
F
N
---------
I
S
D
K
I
D
K
E
T
R
K
I
V
S
---------------
E
Y
I
K
S
K
------
K
L
D
K
D
K
I
K
E
V
V
------
E
-
L
R
K
E
F
L
K
K
I
K
K
V
D
A
D
R
V
L
K
E
F
K
D
L
L
N
S
Y------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
57.89
12%
10
- C5 -
2KHQ
-
?
A:
[1-110]
-----------------------------------------------------------------------------------------------------------------------------------------MIT
F
A
D
Y
F
Y
Q
W
Y
E
V
NKLPHVS
E
S
T
K
R
H
Y
E
S
A
Y
K
H
I
K
D
H
F
---------
R
H
K
L
L
K
D
I
K
R
T
E
Y
Q
---------------
K
F
L
N
E
Y
G
----
L
T
H
S
Y
E
T
I
R
K
L
N
------
S
-
Y
I
R
N
A
F
D
D
A
I
H
E
GYVIKNPTYKAELHASVLEHHHHHH---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
Fugue
50.00
10%
15
- C5 -
2KIW
-
?
A:
[64-174]
--------------------------------------------------------------------------------------------------------------------------------------------T
F
K
Q
V
A
D
D
W
L
K
Q
Y
A
NDVK
V
S
S
V
R
A
R
E
K
A
I
Q
H
A
I
E
R
F
---------
N
T
K
P
I
Q
T
I
K
K
H
D
Y
Q
---------------
R
F
V
D
D
I
S
----
A
Q
Y
S
K
N
Y
V
D
S
I
V
------
A
-
S
T
N
M
I
F
K
Y
A
Y
D
T
RLIKAMPSEG
I
K
R
P
K
K
K
V
S
V
ELEHHHHHH-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
47.47
23%
24
- C5 -
1C8C
2
DN72_SULSO
A:
[1-64]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
---------
A
T
V
K
F
K
Y
K
G
E
E
K
Q
V
D
ISKIK
K
V
W
R
VGK
M
I
S
F
T
Y
D
E
G
----
G
G
K
T
G
R
G
A
V
S
E
K
------
D
-
A
P
K
E
L
L
Q
M
L
A
K
Q
KK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
47.44
21%
49
- C5 -
2DQA
5
?
A:
[2-124]
------------------------------------------------------------------------------------------------------FAPGMVS
Q
K
C
L
L
C
M
C
K
L
E
SGGCKPI
G
C
R
M
D
VG
S
L
S
C
G
YFQIK
Q
P
Y
W
I
D
C
GKPGKD
W
K
S
C
S
N
D
I
N
C
S
S
K
C
V
Q
Q
Y
M
---------
K
R
Y
A
T
H
Y
R
C
P
L
N
C
E
---------------
G
F
A
R
E
H
N
----
G
G
P
N
G
C
H
S
S
R
T
L
------
K
-
Y
W
E
L
L
Q
K
I
P
G
C
K
GVK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
43.30
21%
20
- C5 -
2UWJ
1
F:
[1-32]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
H
K
I
N
---------------
K
W
S
V
I
Y
------
N
I
N
S
T
V
T
R
A
L
R
------
D
-
L
M
Q
G
I
L
Q
K
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
39.19
15%
12
- C5 -
1RP3
-
?
B:
[55-67]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
E
K
K
V
K
------
E
-
L
K
E
K
I
E
K
G
E
Y
E
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
39.05
17%
46
- C5 -
2GOM
-
FIB_STAAM
A:
[105-165]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
---------
K
K
E
Q
K
L
I
Q
A
Q
N
L
V
R
---------------
E
F
E
K
T
H
T
----
V
S
A
H
R
K
A
Q
K
A
V
N
L
VSFEY
K
-
V
K
K
M
V
L
Q
E
R
I
D
N
V
L
K
Q
GLVR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
Fugue
34.77
13%
14
- C5 -
1JJI
1
?
A:
[1-311]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
---------
L
D
M
P
I
D
----
P
V
Y
Y
---------------
Q
L
A
E
Y
F
D
----
S
L
P
K
F
D
Q
F
S
S
A
R
------
E
-
Y
R
E
A
I
N
R
I
Y
E
E
R
N
R
Q
L
S
Q
H
E
RVE
R
V
E
D
R
T
I
K
G
RN
G
D
I
R
V
R
V
Y
Q
QKPD
S
P
V
L
V
Y
Y
H
G
G
GFVICSIESH
D
A
L
C
R
R
I
A
R
L
S
N
S
T
V
V
S
V
DYRLAPEHKFP
A
A
V
Y
D
C
Y
D
A
T
K
W
V
A
E
N
A
EELRIDPS
K
I
F
V
G
G
D
S
A
G
G
N
L
A
A
A
V
S
I
M
A
R
D
S
GEDFIK
H
Q
I
L
I
YPVVNFVAPT
P
S
L
L
E
F
GEGLWILD
Q
K
I
M
S
W
F
S
E
Q
Y
F
SREEDKFNPLASVIFADLENL
P
P
A
L
I
I
T
A
EYDPL
R
D
E
G
E
V
F
G
Q
M
L
R
R
A
G
V
E
A
S
I
V
R
Y
R
GVLHGFINYYPVL
K
A
A
R
D
A
I
N
Q
I
A
A
L
L
V
FD
9
HHSearch
33.32
25%
-12
- C5 -
3BHP
-
YNZC_BACSU
A:
[29-40]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
Q
Q
------
K
-
L
R
Q
E
Y
L
K
G
F
R
S
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
32.40
27%
-5
- C2 -
3TRT
1
VIME_HUMAN
A:
[10-20]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
M
R
------
D
-
V
R
Q
Q
Y
E
S
V
A
A
K
N
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
29.51
22%
-22
- C5 -
2H00
-
MET16_HUMAN
A:
[5-20]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
L
N
F
K
D
P
E
A
V
R
---------------
A
L
T
C
T
L
L
----
R
E
D
F
G
L
S
I
D
I
P
L
------
E
-
R
L
I
P
T
V
P
L
R
L
N
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
28.92
33%
5
- C5 -
3R15
-
?
A:
[75-92]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
Q
G
T
K
A
A
------
A
-
L
R
K
R
F
I
P
K
K
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
28.74
38%
94
- C3 -
3TQ2
-
?
A:
[8-18]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
E
K
V
S
------
A
-
L
K
E
Q
F
L
M
L
M
F
K
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
28.13
14%
70
- C4 -
1NTM
-
?
I:
[1-57]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
LSVAARS
G
P
F
A
P
V
L
S
A
T
S
R
G
V
A
G
---------------
A
L
R
P
L
V
Q
----
A
A
V
P
A
T
S
E
S
P
V
L
------
D
-
L
K
R
S
V
L
C
R
E
S
L
R
G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
20.60
9%
-103
- C1 -
2VS0
1
ESXA_STAAM
A:
[3-11]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
K
M
S
P
E
E
I
R
A
K
S
---------------
Q
S
Y
G
Q
G
S
----
D
Q
I
R
Q
I
L
S
D
L
T
R
------
A
-
Q
G
E
I
A
A
N
W
E
G
Q
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------