@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs2045: (2015-12-12 )
MGFTDETVRFRLDDSNKVEISETLTAVYRSLEEKGYNPINQIVGYVLSGDPAYVPRYNDARNQIRKYERDEIVEELVRYYLQGNGIDL
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........-20-....------.....-30........40.--...----....50....--.....60........70...-.....80.......--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGFTD
E
T
V
R
F
R
LDDSN
K
V
E
-
I
--
S
E
T
L
------
T
A
V
Y
R
-
S
L
E
E
KGY
N
P
I
N
Q
I
--
V
G
Y----VLSGD-PAYV--PRYN
D
A
R
N
Q
I
R
K
Y
E
R
D
E
I
V
E
-
E
L
V
R
Y
Y
L
QGNGIDL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
Fugue
65.77
24%
-39
* C4 *
1PYS
1
SYFB_THET8
B:
[400-474]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
P
E
A
I
P
F
R
P
E
Y
A
N
R
L
L
G
T
--
S
Y
P
E
------
A
E
Q
I
A
-
I
L
K
R
L
G
C
----------
R
----
V
E
G
E
G
-
P
T
Y
R
--
V
T
P
P
S
H
R
L
D
L
R
L
--
E
E
D
L
V
E
-
E
V
A
R
I
Q
G
Y
E
T
-
I
P
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
61.11
28%
-28
- C3 -
1MWM
1
PARM_ECOLX
A:
[235-297]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
Q
R
I
N
D
E
N
K
I
S
-
I
V
-
T
E
A
M
------
N
E
A
L
R
-
K
L
E
Q
R
V
L
N
T
L
N
E
F
--
S
G
Y
T
H
V
M
V
I
G
G
G
-
A
E
L
I
--
C
D
A
V
K
K
H
T
Q
I
R
D
E
R
F
F
K
T
N
N
-
S
Q
Y
D
L
V
N
G
M
Y
L
I
G
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
60.85
28%
-28
- C3 -
3IKU
-
PARM_ECOLX
A:
[235-297]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
Q
R
I
N
D
E
N
K
I
S
-
I
V
-
T
E
A
M
------
N
E
A
L
R
-
K
L
E
Q
R
V
L
N
T
L
N
E
F
--
S
G
Y
T
H
V
M
V
I
G
G
G
-
A
E
L
I
--
C
D
A
V
K
K
H
T
Q
I
R
D
E
R
F
F
K
T
N
N
-
S
Q
Y
D
L
V
N
G
M
Y
L
I
G
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
60.84
28%
-47
- C3 -
2ZGY
1
PARM_ECOLX
A:
[235-297]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
Q
R
I
N
D
E
N
K
I
S
-
I
V
-
T
E
A
M
------
N
E
A
L
R
-
K
L
E
Q
R
V
L
N
T
L
N
E
F
--
S
G
Y
T
H
V
M
V
I
G
G
G
-
A
E
L
I
--
C
D
A
V
K
K
H
T
Q
I
R
D
E
R
F
F
K
T
N
N
-
S
Q
Y
D
L
V
N
G
M
Y
L
I
G
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
46
Fugue
60.65
21%
-1
- C3 -
2IZP
-
BIPD_BURPS
A:
[1030-1301]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGA
R
A
M
T
D
D
D
L
R
A
A
--
G
V
D
R
R
V
-
P
--
E
Q
K
L
------
G
A
A
I
D
-
E
F
A
S
--
L
R
L
P
D
R
I
--
D
G
R
----
F
V
D
G
R
-
R
A
N
L
--
T
V
F
D
D
A
R
V
A
V
R
G
H
A
R
A
Q
R
N
L
L
E
R
L
E
T
E
L
L
G
G
T
L
D
T
AGDEGGIQPDPI
L
Q
G
L
V
D
V
I
G
Q
G
K
S
D
I
D
A
Y
A
T
I
V
E
G
L
T
K
Y
F
Q
S
V
A
D
V
M
S
K
L
Q
DY
I
S
A
K
D
DK
N
M
K
I
D
G
G
K
I
K
A
L
I
Q
Q
V
I
D
H
L
P
T
M
Q
L
P
KGAD
I
A
R
W
R
K
E
L
GDA
V
S
I
S
DSG
V
V
T
I
NP
D
K
L
I
K
M
R
D
S
LPPDG
T
V
W
D
T
A
R
Y
Q
A
W
N
T
A
F
S
G
Q
K
D
N
I
Q
N
D
V
Q
T
L
V
E
K
Y
S
H
Q
N
S
N
F
D
N
L
V
K
V
L
S
G
A
I
S
T
L
T----------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
60.57
28%
-38
- C3 -
2QU4
-
PARM_ECOLX
A:
[235-297]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
Q
R
I
N
D
E
N
K
I
S
-
I
V
-
T
E
A
M
------
N
E
A
L
R
-
K
L
E
Q
R
V
L
N
T
L
N
E
F
--
S
G
Y
T
H
V
M
V
I
G
G
G
-
A
E
L
I
--
C
D
A
V
K
K
H
T
Q
I
R
D
E
R
F
F
K
T
N
N
-
S
Q
Y
D
L
V
N
G
M
Y
L
I
G
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
60.53
28%
-48
- C3 -
2ZGZ
1
PARM_ECOLX
A:
[235-297]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
Q
R
I
N
D
E
N
K
I
S
-
I
V
-
T
E
A
M
------
N
E
A
L
R
-
K
L
E
Q
R
V
L
N
T
L
N
E
F
--
S
G
Y
T
H
V
M
V
I
G
G
G
-
A
E
L
I
--
C
D
A
V
K
K
H
T
Q
I
R
D
E
R
F
F
K
T
N
N
-
S
Q
Y
D
L
V
N
G
M
Y
L
I
G
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
60.51
27%
-87
- C3 -
4Z1Y
1
ENO_CHLAA
A:
[220-274]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
------
Q
L
I
M
E
-
A
I
E
K
A
G
Y
R
P
G
E
Q
I
---------
V
I
A
L
D
-
P
A
T
T
--
E
I
F
-
D
G
K
Y
H
L
K
R
E
G
R
S
L
S
S
A
-
E
M
V
D
Y
W
V
D
L
V
N
R
Y
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
Fugue
60.29
21%
15
- C4 -
4O66
1
SMAL1_MOUSE
A:
[10-76]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
R
G
A
C
I
K
T
G
D
R
F
R
V
K
-
I
G
Y
N
Q
E
L
------
I
A
V
F
K
-
S
L
P
S
R
H
Y
D
S
F
T
K
T
--
W
D
F
-----------------
S
M
S
D
Y
R
A
L
M
K
A
V
E
R
L
S
T
V
S
-
L
K
P
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
60.29
27%
-88
- C3 -
4Z17
2
ENO_CHLAA
A:
[220-274]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
------
Q
L
I
M
E
-
A
I
E
K
A
G
Y
R
P
G
E
Q
I
---------
V
I
A
L
D
-
P
A
T
T
--
E
I
F
E
D
G
K
Y
H
L
K
R
E
G
R
S
L
S
S
A
-
E
M
V
D
Y
W
V
D
L
V
N
R
Y
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
59.99
28%
-38
- C3 -
3IKY
-
PARM_ECOLX
A:
[235-297]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
Q
R
I
N
D
E
N
K
I
S
-
I
V
-
T
E
A
M
------
N
E
A
L
R
-
K
L
E
Q
R
V
L
N
T
L
N
E
F
--
S
G
Y
T
H
V
M
V
I
G
G
G
-
A
E
L
I
--
C
D
A
V
K
K
H
T
Q
I
R
D
E
R
F
F
K
T
N
N
-
S
Q
Y
D
L
V
N
G
M
Y
L
I
G
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
59.76
28%
-35
- C3 -
4A6J
1
PARM_ECOLX
A:
[235-297]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
Q
R
I
N
D
E
N
K
I
S
-
I
V
-
T
E
A
M
------
N
E
A
L
R
-
K
L
E
Q
R
V
L
N
T
L
N
E
F
--
S
G
Y
T
H
V
M
V
I
G
G
G
-
A
E
L
I
--
C
D
A
V
K
K
H
T
Q
I
R
D
E
R
F
F
K
T
N
N
-
S
Q
Y
D
L
V
N
G
M
Y
L
I
G
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
59.41
28%
-35
- C3 -
4A62
1
PARM_ECOLX
A:
[235-297]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
Q
R
I
N
D
E
N
K
I
S
-
I
V
-
T
E
A
M
------
N
E
A
L
R
-
K
L
E
Q
R
V
L
N
T
L
N
E
F
--
S
G
Y
T
H
V
M
V
I
G
G
G
-
A
E
L
I
--
C
D
A
V
K
K
H
T
Q
I
R
D
E
R
F
F
K
T
N
N
-
S
Q
Y
D
L
V
N
G
M
Y
L
I
G
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
45
Fugue
59.29
18%
-39
- C4 -
1JJC
2
SYFB_THET8
B:
[1-785]
MRVP
F
S
W
L
K
A
Y
V
PELES
P
E
V
L
E
E
R
L
A
G
L
GFETD
R
I
E
R
V
F
PIPRG
V
V
F
A
R
VL
E
A
H
P
I
P
GTR
L
K
R
L
V
L
DAG
R
T
V
E
V
V
S
GAENARKG
I
G
V
A
L
ALPGTELPGLGQKV
G
E
R
V
I
QGVRSF
G
M
A
L
S
PRELGVGEYGGGLLEFPEDALPPGTP
L
S
E
A
W
P
E
E
V
V
L
D
L
E
V
T
PNRPDALG
L
L
G
L
A
R
D
L
H
A
L
G
Y
A
L
V
E
P
EAALKAEALPLP
F
A
L
K
VEDPEGAP
H
F
T
L
G
Y
A
F
GLR
V
A
P
S
P
L
W
M
Q
R
A
L
F
A
A
GMRPINN
V
V
D
V
T
N
Y
V
M
L
E
RA
Q
P
M
H
A
F
DLRFVGE
G
I
A
V
R
R
A
R
EG
E
R
L
K
T
LDG
V
E
R
T
L
H
PE
D
L
V
I
A
G
W
R
GE
E
S
F
P
LGLAGVMGGAESEVREDTE
A
I
A
L
E
V
A
C
F
D
P
V
S
I
R
K
T
A
R
R
H
GLRT
E
A
S
H
R
F
E
R
GVDPLG
Q
V
P
A
Q
R
R
A
L
S
L
L
Q
A
L
AG
A
R
V
A
E
A
L
L
E
A
G
S
P
K
P
P
E
A
I
P
F
R
-
P
--
E
Y
A
N
------
R
L
L
G
T
-
S
Y
P
E
A
E
Q
I
A
I
L
K
R
--
L
G
C
----
R
V
E
G
E
G
P
T
Y
R
--
V
T
P
P
S
H
R
L
D
L
R
L
--
E
E
D
L
V
E
-
E
V
A
R
I
Q
----
G
Y
E
T
I
P
L
A
L
P
A
F
FPAPDNRGVE
A
P
Y
R
K
E
Q
R
L
R
E
V
L
S
G
L
G
F
Q
E
V
Y
T
Y
S
F
M
D
PEDARRFRLDPPRLLLLNPLAPEKAALRTHL
F
P
G
L
V
R
V
L
K
E
N
L
D
L
DRPE
R
A
L
L
F
E
V
G
R
V
F
R
E
R
E
E
T
H
L
A
G
L
L
F
G
EGVGLPWA
K
E
R
L
S
G
Y
F
L
L
K
G
Y
L
E
A
L
F
A
R
L
G
L
A
F
R
V
E
A
Q
A
F
PFLHPGV
S
G
R
V
L
V
EGEEV
G
F
L
G
A
LH
P
E
I
A
Q
E
L
EL
P
P
V
H
L
F
E
L
R
L
P
L
P
D
K
P
L
AFQDPSR
H
P
A
A
F
R
D
L
A
V
V
V
P
APTP
Y
G
E
V
E
A
L
V
R
E
A
AGPYLE
S
L
A
L
F
D
L
Y
Q
GPPLPEG
H
K
S
L
A
F
H
L
R
F
R
H
PK
R
T
L
R
D
E
E
V
E
E
A
V
S
R
V
A
E
A
L
R
A
R
GFGLRGLDTP
3
PsiBlast_PDB
58.34
28%
-38
- C3 -
1MWK
-
PARM_ECOLX
A:
[235-297]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
Q
R
I
N
D
E
N
K
I
S
-
I
V
-
T
E
A
M
------
N
E
A
L
R
-
K
L
E
Q
R
V
L
N
T
L
N
E
F
--
S
G
Y
T
H
V
M
V
I
G
G
G
-
A
E
L
I
--
C
D
A
V
K
K
H
T
Q
I
R
D
E
R
F
F
K
T
N
N
-
S
Q
Y
D
L
V
N
G
M
Y
L
I
G
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
58.03
28%
-54
- C3 -
5AEY
1
PARM_ECOLX
A:
[235-297]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
Q
R
I
N
D
E
N
K
I
S
-
I
V
-
T
E
A
M
------
N
E
A
L
R
-
K
L
E
Q
R
V
L
N
T
L
N
E
F
--
S
G
Y
T
H
V
M
V
I
G
G
G
-
A
E
L
I
--
C
D
A
V
K
K
H
T
Q
I
R
D
E
R
F
F
K
T
N
N
-
S
Q
Y
D
L
V
N
G
M
Y
L
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
47
Fugue
53.60
16%
-32
- C4 -
2CBL
1
CBL_HUMAN
A:
[218-305]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TH
P
G
Y
M
A
F
L
T
Y
D
E
V
K
A
R
L
Q
K
F
-
I
--
H
K
P
G
------
S
Y
I
F
R
L
S
C
T
R
L
G
----
Q
W
A
--
I
G
Y
----
V
T
A
D
G
-
N
I
L
Q
T
I
P
H
N
K
P
L
F
Q
A
L
I
D
G
F
R
E
G
--------
F
Y
L
F
P
D
G
R
N
Q
NPDLTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
52.52
16%
-54
- C3 -
1T0F
-
TNSC_ECOLX
C:
[18-42]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
D
-
L
--
R
Y
I
Y
S
Q
RQPE
K
T
M
H
E
-
R
L
K
G
K
G
V
I
V
D
M
A
S
--
L
F
K
----
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
50.23
28%
96
- C- -
5AI7
-
PARM_ECOLX
A:
[235-297]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
Q
R
I
N
D
E
N
K
I
S
-
I
V
-
T
E
A
M
------
N
E
A
L
R
-
K
L
E
Q
R
V
L
N
T
L
N
E
F
--
S
G
Y
T
H
V
M
V
I
G
G
G
-
A
E
L
I
--
C
D
A
V
K
K
H
T
Q
I
R
D
E
R
F
F
K
T
N
N
-
S
Q
Y
D
L
V
N
G
M
Y
L
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
49.16
37%
-54
* C6 *
7TAA
1
AMYA1_ASPOR
A:
[218-252]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
Y
N
K
A
A
G
V
Y
C
I
G
E
----
V
L
D
G
D
-
P
A
Y
T
--
C
P
Y
Q
N
V
M
D
G
V
L
N
Y
P
I
Y
Y
P
L
L
-
N
A
F
K
S
T
S
G
S
M
D
D
L
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------